EWM29231.1, cds1451 (CDS) Nannochloropsis gaditana

Overview
NameEWM29231.1
Unique Namecds1451
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:674149..674748 -
Alignment locationCM002457.1:673611..673826 -
Alignment locationCM002457.1:673423..673501 -
Alignment locationCM002457.1:673144..673274 -
Alignment locationCM002457.1:672485..673030 -
Alignment locationCM002457.1:671860..671964 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29231.1
Productserrate rna effector molecule
Orig transcript idgnl|cribi|Naga_100203g1.2715.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:674149..674748 -
CM002457.1supercontigCM002457.1:673611..673826 -
CM002457.1supercontigCM002457.1:673423..673501 -
CM002457.1supercontigCM002457.1:673144..673274 -
CM002457.1supercontigCM002457.1:672485..673030 -
CM002457.1supercontigCM002457.1:671860..671964 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
Vocabulary: INTERPRO
TermDefinition
IPR007087Znf_C2H2
IPR007042Arsenite-R_2
Homology
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|585111752|gb|EWM29231.1| (serrate rna effector molecule [Nannochloropsis gaditana])

HSP 1 Score: 1133.63 bits (2931), Expect = 0.000e+0
Identity = 558/558 (100.00%), Postives = 558/558 (100.00%), Query Frame = 0
Query:    1 MELEYHALVKRYAKSGAARSHLPLSAAAENAEESKVAEGVNGEGDAGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNMRSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDRERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPFKPSEKDEKSSGNVDESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRKKGAPSAPEVSGP 558
            MELEYHALVKRYAKSGAARSHLPLSAAAENAEESKVAEGVNGEGDAGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNMRSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDRERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPFKPSEKDEKSSGNVDESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRKKGAPSAPEVSGP
Sbjct:    1 MELEYHALVKRYAKSGAARSHLPLSAAAENAEESKVAEGVNGEGDAGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNMRSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDRERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPFKPSEKDEKSSGNVDESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRKKGAPSAPEVSGP 558          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|553185481|ref|XP_005854254.1| (c2h2 zinc-finger protein [Nannochloropsis gaditana CCMP526] >gi|422294805|gb|EKU22105.1| c2h2 zinc-finger protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 504.212 bits (1297), Expect = 1.204e-166
Identity = 252/266 (94.74%), Postives = 253/266 (95.11%), Query Frame = 0
Query:  271 SAPQLYKRVEPFKPSEKDEKSSGNVDESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEK-----------AKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAQPPRVSKNYKDIDVPKS 525
            + PQLYKRVEPFKPSEKDEKSSGNVDESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEK           AKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEA PPRVSKNYKDIDVPKS
Sbjct:  525 TQPQLYKRVEPFKPSEKDEKSSGNVDESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEKSVFLPLAPMLQAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAPPPRVSKNYKDIDVPKS 790          

HSP 2 Score: 408.297 bits (1048), Expect = 1.767e-129
Identity = 199/200 (99.50%), Postives = 199/200 (99.50%), Query Frame = 0
Query:    1 MELEYHALVKRYAKSGAARSHLPLSAAAENAEESKVAEGVNGEGDAGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNMRSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQ 200
            MELEYHALVKRYAKSGAARSHLPL AAAENAEESKVAEGVNGEGDAGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNMRSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQ
Sbjct:  327 MELEYHALVKRYAKSGAARSHLPLGAAAENAEESKVAEGVNGEGDAGHGTTESAGRSEEAAGAGIGLDAKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNMRSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQ 526          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|325183133|emb|CCA17591.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 158.303 bits (399), Expect = 7.077e-38
Identity = 137/488 (28.07%), Postives = 221/488 (45.29%), Query Frame = 0
Query:   79 TLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDR-----ERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPFKPSEKDEKSSGNVDESGVISSE------WTKSMDGKVC--------KLVAAVQEGSRLKGLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
             LY+R      P   L   +R+ GG F+   LSDP K +  +  RSA+++Y T   A  A   +HNT  E                D F PF LQ+S H  +  +  P  LS P  LE D  QA  LA+ALD+     E  L   G+EA+L   +V           +LDV++AYLRRVH  ++Y G +  D GD++ + P L+ R EP +    ++K+     ++  +S +      W   +D KV          L+A+ +E  +L  L +E +T  +A  +      AE     ++G+ RC    CTKLFK+ +F++KH+  KH   V + +  V    +   +  D  +PLPPV+    +N L + P+    ++ +   G + +  R++ E  + RRA      GG    R  G + PR                      +     P +++  Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  197 ILYIRRVPCACPVGCLSDTIRKAGGAFLHLYLSDPVKKSAFDFDRSAYIIYETAAAAAEALPKVHNTFVEDG--------------DLFAPFRLQISQHRSRSPLKTPSYLSAPNRLEFDYEQALGLAKALDQSVFLNEADLAEHGIEALLRVESVMEAYAVNKQ--KLDVIIAYLRRVHHYIYYAGIQCLDMGDIMHAHPALFCRPEPSERDLAEDKARTEPVQAEDVSDQSKNVGGWAAGLDEKVQAYMKQLVPDLIASNREKQKL--LVDEIETHEEAALENTYANYAEKAG--EDGKHRCRL--CTKLFKAIDFVKKHIRNKHPELVVDKIADVGENYMWEQYREDPNRPLPPVET---TNNL-SRPILGNRAQRSRPEGPNFNGNRKMDEPYNYRRAPYPPRSGGRSHSRAPGMHSPRR-------------------PTSDLPVDPRQITTLYRDLDNLQDTKVELSFDALDSLPPPKKKTK 639          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|635372287|emb|CCI39508.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 156.377 bits (394), Expect = 2.782e-37
Identity = 139/502 (27.69%), Postives = 226/502 (45.02%), Query Frame = 0
Query:   67 LDAKGLEGHADAT---LYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDRERGLDGE-----GLEAVL-SAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPFKPSEKDEKSSGNV-------DESGVISSEWTKSMDGKVCKLVAAVQEGSRLKGLDEEAQTQRDAEEKAKQKWLAENMSNE-----DEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYGPRSIPGVGVGGASETGPLGLHGAVTAQEAQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            L  KG +   + +   LY+R      P   L   +R+ GG F+   LSDP K +  +  RSA+++Y T   A  A   +HNT  E                D F PF LQ+S H  +  +  P  LS P  LE D  QA +LA+ALD+   L+       G+EA+L S P ++A    +    +LDV++AYLRRVH  ++Y G +  D GD++ + P L+ R EP +    ++K+   +       D+S  +   W   +D KV   +  + E   +    ++ Q   D  EK ++  L    +N      ++G+ RC    CTKLFK+ +F++KH+  KH   V + +  V    +   +  D  +PLPPV+    +N L + P+     + +   G + +  R++ E  + RRA     GGG    R          PG+                +T           +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  182 LSGKGFDNDMEDSSRILYIRRVPCACPVGCLSDTIRKAGGAFLHLYLSDPVKKSAFDFDRSAYIIYDTAAAAAEALPKVHNTFVEDG--------------DLFAPFRLQISQHRSRAPLKTPSYLSAPNRLEFDYEQALSLAKALDQAVFLNKNDIAEHGIEALLASEPVMEAYPSNKQ---KLDVIIAYLRRVHHYIYYAGIQCLDMGDIMHAHPALFCRPEPSERDLAEDKARTELVQAEEGSDQSKSVGG-WAAGLDEKVQAYMKQL-EPDTIASNRQKQQVLVDEIEKREEAALESTYANYAEKAGEDGKHRCRL--CTKLFKAIDFVKKHIRNKHPELVVDKIADVGENYMWEQYREDPNRPLPPVET---TNTL-SKPILGSRGQRSRPEGPNFNGNRKMDEPFNYRRAPYPTRGGGRSYSR---------TPGMNSPRRPPPDVPVDPRQITT----------SYRDLDNLQDTKVELSFDALDTLPPPKKKTK 639          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|1214695717|gb|OWZ09428.1| (hypothetical protein PHMEG_00017875 [Phytophthora megakarya])

HSP 1 Score: 156.377 bits (394), Expect = 4.399e-37
Identity = 155/550 (28.18%), Postives = 230/550 (41.82%), Query Frame = 0
Query:   69 AKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDRERGLDG-------EGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPF----------------------KPSEKDEKSSGNVD----ESGVISSE-------WTKSMDGKVC----KLVAAVQEGSRLK--GLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYG------------------PRSIPGVGVGGASETGPLGLHGAVTAQE-------AQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            A  LE  A   LYVR      P A L + +++ GGPFV   LSDP K +  +  RSA+++Y     A  A   +HNT  E         G Q      F PF LQ+S H  +  +  P  LS P+ L  D  Q+ ALA ALD  R   G        G+EA L++  V           +LDVV+AYLRRVH  ++Y G +  D GD++ + P L+ R  P                        P+E+++  +GN D    ES   + E       W  ++D KV     +L   V E  R K   + +E +T+ +A  ++      E  S  D+G+ RC    CTKLFK+ +F++KH+  KH   V + +  V  + +   +  D+++P+PP++          +P G +L   A   G                  R    GGG G YR  G+ G                  PRS P    GG                          P +VS +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  178 ANDLENSA-RVLYVRRVPCACPVATLSETIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYENAAAATDAMPKIHNTFVED--------GNQ------FPPFRLQVSPHRARAPLKTPSYLSVPERLTADFQQSLALANALD-ARSFHGGGDKLARFGIEATLASEEVAQNYSTDKQ--KLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQDAANAAKPEDDTPTEENKDDAGNTDAADKESANTTGETAKAIGGWAAALDEKVQTYLKELAPEVVENKRAKDRAVVDEIETREEAALESTYANYGEKAS--DDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELVVDKIAEVGESYMWEQYREDEQRPMPPLETSNN------MPGGAVLGGRAGSNGGRNGGGGYRGRPD-----RDFNGGGGRGFYRDDGYRGRGPPMRDDRMRRGSFDRPPRSPPRYNGGGGGYGRSPSRGPPSGPPRVPDGDLPVDPRQVSTSYRDLDNLQDTKVELSFDALDSLPPPKKKTK 694          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|566019976|gb|ETI42887.1| (hypothetical protein, variant [Phytophthora parasitica P1569])

HSP 1 Score: 150.599 bits (379), Expect = 5.020e-35
Identity = 158/546 (28.94%), Postives = 235/546 (43.04%), Query Frame = 0
Query:   69 AKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDR------ERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPF---------------KPS-----------------EKDEKSSGNVDESGVISSEWTKSMDGKVC----KLVAAVQEGSRLK--GLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYG------------------PRSIPGVGVGG---ASETGPLGLHGAVTAQE--AQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            A  LE  A   LYVR      P   L + +++ GGPFV   LSDP K +  +  RSA+++Y + + A  A   +HNT  E         G Q      F PF LQ+S H  +  +  P  LS P+ L  D  Q+ ALA+ALD       E  L   G+EA+L++  V           +LDVV+AYLRRVH  ++Y G +  D GD++ + P L+ R  P                KP                  EK+  +SG   E+      W  ++D KV     +L   V E  R K   L +E + + +A  ++      E  S  D+G+ RC    CTKLFK+ +F++KH+  KH   V + +  V  + +   +  D++ P+PP++    SN   ++P G +L   A       +            R R     GG G YR  G+ G                  PRS P    GG   +   GP      V   E    P +VS +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  182 ANDLENSA-RVLYVRRVPCACPVGTLSEAIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESADAASDAMPKIHNTFVED--------GTQ------FPPFRLQVSPHRARAPLKTPSYLSVPERLTADFKQSLALAKALDARLFHGAEEKLARFGIEALLASEEVTQNYSSDKQ--KLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQEAAAKPEDEALTTENKDDAANTEGEKEPTASGPSGETAKAIGGWAAALDEKVQAYLKELAPEVVETKRAKERALVDEIEAREEAALESTYSNYGEKAS--DDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELVVDKIAEVGESYMWEQYREDEQHPMPPLET---SN---SMPGGAVLGGRAGGSNGGRN--------GGGYRGRPERDFGGRGFYRDDGYRGRGPPMRDDRVRRSSFDRPPRSPPRYNGGGYGRSPSRGPPSGPPRVPDSELPVDPRQVSTSYRDLDNLQDTKVELSFDALDSLPPPKKKTK 692          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|570979927|gb|ETP40757.1| (hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 150.599 bits (379), Expect = 5.262e-35
Identity = 158/546 (28.94%), Postives = 235/546 (43.04%), Query Frame = 0
Query:   69 AKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDR------ERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPF---------------KPS-----------------EKDEKSSGNVDESGVISSEWTKSMDGKVC----KLVAAVQEGSRLK--GLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYG------------------PRSIPGVGVGG---ASETGPLGLHGAVTAQE--AQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            A  LE  A   LYVR      P   L + +++ GGPFV   LSDP K +  +  RSA+++Y + + A  A   +HNT  E         G Q      F PF LQ+S H  +  +  P  LS P+ L  D  Q+ ALA+ALD       E  L   G+EA+L++  V           +LDVV+AYLRRVH  ++Y G +  D GD++ + P L+ R  P                KP                  EK+  +SG   E+      W  ++D KV     +L   V E  R K   L +E + + +A  ++      E  S  D+G+ RC    CTKLFK+ +F++KH+  KH   V + +  V  + +   +  D++ P+PP++    SN   ++P G +L   A       +            R R     GG G YR  G+ G                  PRS P    GG   +   GP      V   E    P +VS +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  182 ANDLENSA-RVLYVRRVPCACPVGTLSEAIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESADAASDAMPKIHNTFVED--------GTQ------FPPFRLQVSPHRARAPLKTPSYLSVPERLTADFKQSLALAKALDARLFHGAEEKLARFGIEALLASEEVTQNYSSDKQ--KLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQEAAAKPEDEALTTENKDDAANTEGEKEPTASGPSGETAKAIGGWAAALDEKVQAYLKELAPEVVETKRAKERALVDEIEAREEAALESTYSNYGEKAS--DDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELVVDKIAEVGESYMWEQYREDEQHPMPPLET---SN---SMPGGAVLGGRAGGSNGGRN--------GGGYRGRPERDFGGRGFYRDDGYRGRGPPMRDDRVRRSSFDRPPRSPPRYNGGGYGRSPSRGPPSGPPRVPDSELPVDPRQVSTSYRDLDNLQDTKVELSFDALDSLPPPKKKTK 692          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|675198875|ref|XP_008908322.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567957320|gb|ETK82923.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567985970|gb|ETL36302.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568015357|gb|ETL89534.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568045659|gb|ETM42799.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568091532|gb|ETN06353.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570323572|gb|ETO71520.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570947405|gb|ETP12662.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 150.214 bits (378), Expect = 5.414e-35
Identity = 158/546 (28.94%), Postives = 235/546 (43.04%), Query Frame = 0
Query:   69 AKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDR------ERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEPF---------------KPS-----------------EKDEKSSGNVDESGVISSEWTKSMDGKVC----KLVAAVQEGSRLK--GLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYG------------------PRSIPGVGVGG---ASETGPLGLHGAVTAQE--AQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            A  LE  A   LYVR      P   L + +++ GGPFV   LSDP K +  +  RSA+++Y + + A  A   +HNT  E         G Q      F PF LQ+S H  +  +  P  LS P+ L  D  Q+ ALA+ALD       E  L   G+EA+L++  V           +LDVV+AYLRRVH  ++Y G +  D GD++ + P L+ R  P                KP                  EK+  +SG   E+      W  ++D KV     +L   V E  R K   L +E + + +A  ++      E  S  D+G+ RC    CTKLFK+ +F++KH+  KH   V + +  V  + +   +  D++ P+PP++    SN   ++P G +L   A       +            R R     GG G YR  G+ G                  PRS P    GG   +   GP      V   E    P +VS +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  182 ANDLENSA-RVLYVRRVPCACPVGTLSEAIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESADAASDAMPKIHNTFVED--------GTQ------FPPFRLQVSPHRARAPLKTPSYLSVPERLTADFKQSLALAKALDARLFHGAEEKLARFGIEALLASEEVTQNYSSDKQ--KLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQEAAAKPEDEALTTENKDDAANTEGEKEPTASGPSGETAKAIGGWAAALDEKVQAYLKELAPEVVETKRAKERALVDEIEAREEAALESTYSNYGEKAS--DDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELVVDKIAEVGESYMWEQYREDEQHPMPPLET---SN---SMPGGAVLGGRAGGSNGGRN--------GGGYRGRPERDFGGRGFYRDDGYRGRGPPMRDDRVRRSSFDRPPRSPPRYNGGGYGRSPSRGPPSGPPRVPDSELPVDPRQVSTSYRDLDNLQDTKVELSFDALDSLPPPKKKTK 692          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|570979926|gb|ETP40756.1| (hypothetical protein F442_11968 [Phytophthora parasitica P10297])

HSP 1 Score: 150.214 bits (378), Expect = 5.902e-35
Identity = 166/591 (28.09%), Postives = 251/591 (42.47%), Query Frame = 0
Query:   32 EESKVAEGVNGEGDAGHGTTESAGRS--EEAAGAGIGLD------AKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDR------ERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEP---------------FKPS-----------------EKDEKSSGNVDESGVISSEWTKSMDGKVC----KLVAAVQEGSRLK--GLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYG------------------PRSIPGVGVGG---ASETGPLGLHGAVTAQE--AQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            E+ K+ + +N     G      A +   +E   A  G++      A  LE  A   LYVR      P   L + +++ GGPFV   LSDP K +  +  RSA+++Y + + A  A   +HNT  E         G Q      F PF LQ+S H  +  +  P  LS P+ L  D  Q+ ALA+ALD       E  L   G+EA+L++  V           +LDVV+AYLRRVH  ++Y G +  D GD++ + P L+ R  P                KP                  EK+  +SG   E+      W  ++D KV     +L   V E  R K   L +E + + +A  ++      E  S  D+G+ RC    CTKLFK+ +F++KH+  KH   V + +  V  + +   +  D++ P+PP++    SN   ++P G +L   A       +            R R     GG G YR  G+ G                  PRS P    GG   +   GP      V   E    P +VS +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  142 EKQKITQQINEAKQFGERVRSGAAKICLDEQPPAENGVNPLGEDFANDLENSA-RVLYVRRVPCACPVGTLSEAIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESADAASDAMPKIHNTFVED--------GTQ------FPPFRLQVSPHRARAPLKTPSYLSVPERLTADFKQSLALAKALDARLFHGAEEKLARFGIEALLASEEVTQNYSSDKQ--KLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQEAAAKPEDEALTTENKDDAANTEGEKEPTASGPSGETAKAIGGWAAALDEKVQAYLKELAPEVVETKRAKERALVDEIEAREEAALESTYSNYGEKAS--DDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELVVDKIAEVGESYMWEQYREDEQHPMPPLET---SN---SMPGGAVLGGRAGGSNGGRN--------GGGYRGRPERDFGGRGFYRDDGYRGRGPPMRDDRVRRSSFDRPPRSPPRYNGGGYGRSPSRGPPSGPPRVPDSELPVDPRQVSTSYRDLDNLQDTKVELSFDALDSLPPPKKKTK 697          
BLAST of EWM29231.1 vs. NCBI_GenBank
Match: gi|566019975|gb|ETI42886.1| (hypothetical protein F443_12057 [Phytophthora parasitica P1569])

HSP 1 Score: 150.214 bits (378), Expect = 6.425e-35
Identity = 158/546 (28.94%), Postives = 235/546 (43.04%), Query Frame = 0
Query:   69 AKGLEGHADATLYVRPFSSTVPRAPLEKLLRERGGPFVRFLLSDPAKSTYCNM-RSAWLVYATKEQADSARQTLHNTEAEHPLEEQVRAGQQPPPPDYFRPFTLQLSAHNGKRTVPVPLDLSDPKHLEKDATQAFALAQALDR------ERGLDGEGLEAVLSAPAVKAELERRNMSFRLDVVMAYLRRVHFLVFYGGDEFKDEGDLLFSAPQLYKRVEP---------------FKPS-----------------EKDEKSSGNVDESGVISSEWTKSMDGKVC----KLVAAVQEGSRLK--GLDEEAQTQRDAEEKAKQKWLAENMSNEDEGRWRCGAEGCTKLFKSSEFLQKHLLLKHGGGVEEALRMVRTTIVRSAFEADQEKPLPPVQVDKGSNVLKAVPVGEILSEVAAVLGKDMSSWRRLIEESSRRRARASGAGGGAGAYRGRGHYG------------------PRSIPGVGVGG---ASETGPLGLHGAVTAQE--AQPPRVSKNYKDIDVPKSTLLTVDYGDVAIPPPPKRRRK 546
            A  LE  A   LYVR      P   L + +++ GGPFV   LSDP K +  +  RSA+++Y + + A  A   +HNT  E         G Q      F PF LQ+S H  +  +  P  LS P+ L  D  Q+ ALA+ALD       E  L   G+EA+L++  V           +LDVV+AYLRRVH  ++Y G +  D GD++ + P L+ R  P                KP                  EK+  +SG   E+      W  ++D KV     +L   V E  R K   L +E + + +A  ++      E  S  D+G+ RC    CTKLFK+ +F++KH+  KH   V + +  V  + +   +  D++ P+PP++    SN   ++P G +L   A       +            R R     GG G YR  G+ G                  PRS P    GG   +   GP      V   E    P +VS +Y+D+D  + T + + +  +   PPPK++ K
Sbjct:  187 ANDLENSA-RVLYVRRVPCACPVGTLSEAIKKAGGPFVHLYLSDPVKKSAFDFDRSAYIIYESADAASDAMPKIHNTFVED--------GTQ------FPPFRLQVSPHRARAPLKTPSYLSVPERLTADFKQSLALAKALDARLFHGAEEKLARFGIEALLASEEVTQNYSSDKQ--KLDVVVAYLRRVHHYIYYAGVQCLDMGDIMHAHPALFCRPPPSARDIEEEKARQEAAAKPEDEALTTENKDDAANTEGEKEPTASGPSGETAKAIGGWAAALDEKVQAYLKELAPEVVETKRAKERALVDEIEAREEAALESTYSNYGEKAS--DDGKHRCRL--CTKLFKAMDFVKKHIRNKHPELVVDKIAEVGESYMWEQYREDEQHPMPPLET---SN---SMPGGAVLGGRAGGSNGGRN--------GGGYRGRPERDFGGRGFYRDDGYRGRGPPMRDDRVRRSSFDRPPRSPPRYNGGGYGRSPSRGPPSGPPRVPDSELPVDPRQVSTSYRDLDNLQDTKVELSFDALDSLPPPKKKTK 697          
The following BLAST results are available for this feature:
BLAST of EWM29231.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111752|gb|EWM29231.1|0.000e+0100.00serrate rna effector molecule [Nannochloropsis gad... [more]
gi|553185481|ref|XP_005854254.1|1.204e-16694.74c2h2 zinc-finger protein [Nannochloropsis gaditana... [more]
gi|325183133|emb|CCA17591.1|7.077e-3828.07conserved hypothetical protein [Albugo laibachii N... [more]
gi|635372287|emb|CCI39508.1|2.782e-3727.69unnamed protein product [Albugo candida][more]
gi|1214695717|gb|OWZ09428.1|4.399e-3728.18hypothetical protein PHMEG_00017875 [Phytophthora ... [more]
gi|566019976|gb|ETI42887.1|5.020e-3528.94hypothetical protein, variant [Phytophthora parasi... [more]
gi|570979927|gb|ETP40757.1|5.262e-3528.94hypothetical protein, variant [Phytophthora parasi... [more]
gi|675198875|ref|XP_008908322.1|5.414e-3528.94hypothetical protein, variant [Phytophthora parasi... [more]
gi|570979926|gb|ETP40756.1|5.902e-3528.09hypothetical protein F442_11968 [Phytophthora para... [more]
gi|566019975|gb|ETI42886.1|6.425e-3528.94hypothetical protein F443_12057 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1454rna1454Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications