EWM29230.1, cds1450 (CDS) Nannochloropsis gaditana

Overview
NameEWM29230.1
Unique Namecds1450
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:671055..671060 -
Alignment locationCM002457.1:670821..670880 -
Alignment locationCM002457.1:670659..670703 -
Alignment locationCM002457.1:667689..670232 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29230.1
ProductZn(2)-C6 fungal-type DNA-binding domain protein
Orig transcript idgnl|cribi|Naga_100203g2.2714.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:671055..671060 -
CM002457.1supercontigCM002457.1:670821..670880 -
CM002457.1supercontigCM002457.1:670659..670703 -
CM002457.1supercontigCM002457.1:667689..670232 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700DNA-binding transcription factor activity
GO:0003677DNA binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
[Close]
BLAST of EWM29230.1 vs. NCBI_GenBank
Match: gi|585111751|gb|EWM29230.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1800.02 bits (4661), Expect = 0.000e+0
Identity = 884/884 (100.00%), Postives = 884/884 (100.00%), Query Frame = 0 
Query:    1 MEDTSVTDTTCLSCFRSHVKCEKSIPCRRCQRLNLRCGDGAVGVMSGIGEGMGQGISPAYSAPTLGDRLQLPGMPSRSPFYDQPSRSGAGGTHRQQVPQHFQFQHFFQEQEQQQRRQYEGLHAPHGSQHHQGQNLQQQNRLLQQQRYQQPPQQHQQLQLQSQKQQVQHHHYHQEQLQQPGEEQVGEGGEKEKEERDEGGDPEEEEKDRHRHRYRQQHQHQRVEELLREEQEQREQGRMDEGQHQREPRHGHGQQQHEQLPQPHRQAQPKYQHHHQEQDSQREEGEGEEGKDRQHERPTPSESSSTPLPDRPIFKVSHPPHFQRCDSQRRQKRDEGTYLNSQLLRQGQQQGGELSGQKQETNQQPILEHHGHGLIQEQDQPPPARQETSQQLANRHQEKQGQQALQGLEQVKHGQEQQKPQSYQLYQEQEPHQQQQQQQHHRDGEGGEDDTVKEDEEAEEGTEKSAASLSSPALPKRHQAPASQSSFRSPSLDAPQSHAQAGRAWDLHASQRSAPQEAPKPSQPRKRERSALTDPFPCLPSGEGPQDSRASGIAGGAGSATNGKESQRSDSACINNSVSESSSERGSAMVTYNNFRGPPADACEVFHSETERVGFLGGGSSTLAGSDHETARSACTKKHNSSARSFASAGGENTTLEMTGPFLNLLSSGEVAVERTRHLLTSWHLWSVETRNANAKAHVDQEAKEDLEEVAKLVRLSLPSSVAEWVESRGPQVTSGASMALLEEEEQVQSFLDMCADDDGSAICSAVYCGGRLQLTLNSRFAAMFMTLEEMEMTISQEIVRPELVWRRLLSPECFVAYNEALCQAYFRGQNLGGEVCEIIKCVDRFGLELPCFMRVRIFASSHGSITASVILLLPLQLSRLLENM 884
            MEDTSVTDTTCLSCFRSHVKCEKSIPCRRCQRLNLRCGDGAVGVMSGIGEGMGQGISPAYSAPTLGDRLQLPGMPSRSPFYDQPSRSGAGGTHRQQVPQHFQFQHFFQEQEQQQRRQYEGLHAPHGSQHHQGQNLQQQNRLLQQQRYQQPPQQHQQLQLQSQKQQVQHHHYHQEQLQQPGEEQVGEGGEKEKEERDEGGDPEEEEKDRHRHRYRQQHQHQRVEELLREEQEQREQGRMDEGQHQREPRHGHGQQQHEQLPQPHRQAQPKYQHHHQEQDSQREEGEGEEGKDRQHERPTPSESSSTPLPDRPIFKVSHPPHFQRCDSQRRQKRDEGTYLNSQLLRQGQQQGGELSGQKQETNQQPILEHHGHGLIQEQDQPPPARQETSQQLANRHQEKQGQQALQGLEQVKHGQEQQKPQSYQLYQEQEPHQQQQQQQHHRDGEGGEDDTVKEDEEAEEGTEKSAASLSSPALPKRHQAPASQSSFRSPSLDAPQSHAQAGRAWDLHASQRSAPQEAPKPSQPRKRERSALTDPFPCLPSGEGPQDSRASGIAGGAGSATNGKESQRSDSACINNSVSESSSERGSAMVTYNNFRGPPADACEVFHSETERVGFLGGGSSTLAGSDHETARSACTKKHNSSARSFASAGGENTTLEMTGPFLNLLSSGEVAVERTRHLLTSWHLWSVETRNANAKAHVDQEAKEDLEEVAKLVRLSLPSSVAEWVESRGPQVTSGASMALLEEEEQVQSFLDMCADDDGSAICSAVYCGGRLQLTLNSRFAAMFMTLEEMEMTISQEIVRPELVWRRLLSPECFVAYNEALCQAYFRGQNLGGEVCEIIKCVDRFGLELPCFMRVRIFASSHGSITASVILLLPLQLSRLLENM
Sbjct:    1 MEDTSVTDTTCLSCFRSHVKCEKSIPCRRCQRLNLRCGDGAVGVMSGIGEGMGQGISPAYSAPTLGDRLQLPGMPSRSPFYDQPSRSGAGGTHRQQVPQHFQFQHFFQEQEQQQRRQYEGLHAPHGSQHHQGQNLQQQNRLLQQQRYQQPPQQHQQLQLQSQKQQVQHHHYHQEQLQQPGEEQVGEGGEKEKEERDEGGDPEEEEKDRHRHRYRQQHQHQRVEELLREEQEQREQGRMDEGQHQREPRHGHGQQQHEQLPQPHRQAQPKYQHHHQEQDSQREEGEGEEGKDRQHERPTPSESSSTPLPDRPIFKVSHPPHFQRCDSQRRQKRDEGTYLNSQLLRQGQQQGGELSGQKQETNQQPILEHHGHGLIQEQDQPPPARQETSQQLANRHQEKQGQQALQGLEQVKHGQEQQKPQSYQLYQEQEPHQQQQQQQHHRDGEGGEDDTVKEDEEAEEGTEKSAASLSSPALPKRHQAPASQSSFRSPSLDAPQSHAQAGRAWDLHASQRSAPQEAPKPSQPRKRERSALTDPFPCLPSGEGPQDSRASGIAGGAGSATNGKESQRSDSACINNSVSESSSERGSAMVTYNNFRGPPADACEVFHSETERVGFLGGGSSTLAGSDHETARSACTKKHNSSARSFASAGGENTTLEMTGPFLNLLSSGEVAVERTRHLLTSWHLWSVETRNANAKAHVDQEAKEDLEEVAKLVRLSLPSSVAEWVESRGPQVTSGASMALLEEEEQVQSFLDMCADDDGSAICSAVYCGGRLQLTLNSRFAAMFMTLEEMEMTISQEIVRPELVWRRLLSPECFVAYNEALCQAYFRGQNLGGEVCEIIKCVDRFGLELPCFMRVRIFASSHGSITASVILLLPLQLSRLLENM 884
The following BLAST results are available for this feature:
BLAST of EWM29230.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111751|gb|EWM29230.1|0.000e+0100.00Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1453rna1453Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications