EWM29236.1, cds1438 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|585111758|gb|EWM29236.1| (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana]) HSP 1 Score: 912.138 bits (2356), Expect = 0.000e+0 Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0
Query: 1 MPQRQTTVHLHVLQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKRHYESSREHAPARSRLRSVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
MPQRQTTVHLHVLQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKRHYESSREHAPARSRLRSVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN
Sbjct: 1 MPQRQTTVHLHVLQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKRHYESSREHAPARSRLRSVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|585099865|gb|EWM20344.1| (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana]) HSP 1 Score: 188.348 bits (477), Expect = 7.107e-52 Identity = 109/307 (35.50%), Postives = 155/307 (50.49%), Query Frame = 0
Query: 179 YHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHAL-----------------------------------------SPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
+HVR IIRVHH Q ++ ++ Q Q + S P P ++DFALV TE +G+PVV IA W L+ + P P V+ D +F+ +A+ R+AP++CS + E ++ G + C YDNH +YQATDV + ++ R C WCTH ++TN DN YHP++L L Q D+VTTDF G + W G VDLGG+L SK ++M GFIASLP + ++ H+ D+ F R L LGA +V++L+FFHN
Sbjct: 90 HHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFP-YPTLSMDFALVPTEVRGIPVVDSIARYFW--------------LNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELCR-CTWCTHAVITNGDNCYHPNYLKETLLELDPPSDAQYGTVQERSDSSSGLKGQIRDKKTRRMLAWERGEQWDMVTTDFTTSGI-LSRGAWGLGFVDLGGILFSKRILMSAQGFIASLPSGSRAEQAHNADWLFAARALRLGARAHVVNQLLFFHN 379
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|553184915|ref|XP_005854167.1| (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >gi|553185580|ref|XP_005854270.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294788|gb|EKU22088.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294890|gb|EKU22190.1| hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 107.842 bits (268), Expect = 8.126e-24 Identity = 66/182 (36.26%), Postives = 94/182 (51.65%), Query Frame = 0
Query: 266 DVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGG--FIASLPPDAGPQETHDNDYWFVHRGLELGATTALV-HKLMFFHN 444
D+++ + +FY R + C+ A Y + V +CD+D++ YY ATD + + C CTHVLVTN DN Y P FL + ADL F H + G +DLG VL + V+ G F++SLP DAGP+E HD DYW V LE G + A+ ++L+ +HN
Sbjct: 7 DLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETVRQSADLAIVGFT-HRNQAQTPVLGVGGLDLGAVLM-RVGVLDHGRRLFLSSLPVDAGPKEVHDADYWMVVNALERGLSFAVCKNQLLMYHN 186
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|585107806|gb|EWM25935.1| (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana]) HSP 1 Score: 93.9745 bits (232), Expect = 1.595e-17 Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = 0
Query: 180 HVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADL 362
HVRV+IR H ++ SLI+ +RAQ + G F DF LV TE L R+ + ++V D+++ + +FY R + C+ A Y + V +CD+D++ YY ATD + + C CTHVLVTN DN Y P FL + ADL
Sbjct: 62 HVRVVIRTHAREQLQLRSLIYGLRAQSE------GQAGFKADFVLVPTEPASLQTYQRLC----------------NEMNVG--FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADL 220 The following BLAST results are available for this feature:
BLAST of EWM29236.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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