EWM29236.1, cds1438 (CDS) Nannochloropsis gaditana

Overview
NameEWM29236.1
Unique Namecds1438
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:642019..643353 -

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Properties
Property NameValue
Protein idEWM29236.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100119g17.7994.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:642019..643353 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|585111758|gb|EWM29236.1| (hypothetical protein Naga_100119g17 [Nannochloropsis gaditana])

HSP 1 Score: 912.138 bits (2356), Expect = 0.000e+0
Identity = 444/444 (100.00%), Postives = 444/444 (100.00%), Query Frame = 0
Query:    1 MPQRQTTVHLHVLQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKRHYESSREHAPARSRLRSVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
            MPQRQTTVHLHVLQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKRHYESSREHAPARSRLRSVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN
Sbjct:    1 MPQRQTTVHLHVLQPAKAWMRRRVGIMAYTALLLVAVALIARHDGWSGKRSSSRSRAASKARALASPKRHYESSREHAPARSRLRSVTQAYRVAADSSQLPPHRVLPLPCDCQHCEVRQSYSTSPPMPTLPFPTGTAPARESGIFHHDPFPSSTREDMLAPEPAAWLGVGRPPHRVGEYHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444          
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|585099865|gb|EWM20344.1| (hypothetical protein Naga_100252g10 [Nannochloropsis gaditana])

HSP 1 Score: 188.348 bits (477), Expect = 7.107e-52
Identity = 109/307 (35.50%), Postives = 155/307 (50.49%), Query Frame = 0
Query:  179 YHVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHAL-----------------------------------------SPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGGFIASLPPDAGPQETHDNDYWFVHRGLELGATTALVHKLMFFHN 444
            +HVR IIRVHH Q      ++ ++  Q Q + S P  P  ++DFALV TE +G+PVV  IA   W              L+ + P P V+  D   +F+ +A+ R+AP++CS  +  E  ++ G   +   C YDNH +YQATDV + ++ R C WCTH ++TN DN YHP++L   L                                           Q D+VTTDF   G  +    W  G VDLGG+L SK ++M   GFIASLP  +  ++ H+ D+ F  R L LGA   +V++L+FFHN
Sbjct:   90 HHVRFIIRVHHEQADLVKGMVHSLLYQQQLSVSFP-YPTLSMDFALVPTEVRGIPVVDSIARYFW--------------LNTAEPFPHVYALDLDQTFFDVAAERAAPFKCSKEEAREVANRAGKAAMIKICRYDNHVFYQATDVAVAELCR-CTWCTHAVITNGDNCYHPNYLKETLLELDPPSDAQYGTVQERSDSSSGLKGQIRDKKTRRMLAWERGEQWDMVTTDFTTSGI-LSRGAWGLGFVDLGGILFSKRILMSAQGFIASLPSGSRAEQAHNADWLFAARALRLGARAHVVNQLLFFHN 379          
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|553184915|ref|XP_005854167.1| (hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526] >gi|553185580|ref|XP_005854270.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294788|gb|EKU22088.1| hypothetical protein NGA_0179801 [Nannochloropsis gaditana CCMP526] >gi|422294890|gb|EKU22190.1| hypothetical protein NGA_0179802 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 107.842 bits (268), Expect = 8.126e-24
Identity = 66/182 (36.26%), Postives = 94/182 (51.65%), Query Frame = 0
Query:  266 DVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADLVTTDFIDHGERVVVADWRWGEVDLGGVLASKAVVMKTGG--FIASLPPDAGPQETHDNDYWFVHRGLELGATTALV-HKLMFFHN 444
            D+++ +   +FY     R +   C+ A    Y  +     V  +CD+D++ YY ATD  +   +  C  CTHVLVTN DN Y P FL   +   ADL    F  H  +        G +DLG VL  +  V+  G   F++SLP DAGP+E HD DYW V   LE G + A+  ++L+ +HN
Sbjct:    7 DLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLQETVRQSADLAIVGFT-HRNQAQTPVLGVGGLDLGAVLM-RVGVLDHGRRLFLSSLPVDAGPKEVHDADYWMVVNALERGLSFAVCKNQLLMYHN 186          
BLAST of EWM29236.1 vs. NCBI_GenBank
Match: gi|585107806|gb|EWM25935.1| (hypothetical protein Naga_100134g8 [Nannochloropsis gaditana])

HSP 1 Score: 93.9745 bits (232), Expect = 1.595e-17
Identity = 58/183 (31.69%), Postives = 83/183 (45.36%), Query Frame = 0
Query:  180 HVRVIIRVHHLQEAATHSLIWAMRAQPQAAQSQPGSPEFTVDFALVATEEQGLPVVHRIAEAEWRRVRDIDPLRSSDSLSVSPPAPDVFVADTTGSFYALASNRSAPYRCSAADEAEYYSKGGDYYVRLHCDYDNHAYYQATDVGMLDVLRGCAWCTHVLVTNSDNSYHPDFLLHALSPQADL 362
            HVRV+IR H  ++    SLI+ +RAQ +      G   F  DF LV TE   L    R+                 + ++V     D+++ +   +FY     R +   C+ A    Y  +     V  +CD+D++ YY ATD  +   +  C  CTHVLVTN DN Y P FL   +   ADL
Sbjct:   62 HVRVVIRTHAREQLQLRSLIYGLRAQSE------GQAGFKADFVLVPTEPASLQTYQRLC----------------NEMNVG--FDDLYLVELPDTFYEDVKLRDSRLTCTDAVRTRYVQEFNADEVHRYCDFDHYVYYAATDKALATFVLPCRSCTHVLVTNGDNGYAPSFLRETVRQSADL 220          
The following BLAST results are available for this feature:
BLAST of EWM29236.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585111758|gb|EWM29236.1|0.000e+0100.00hypothetical protein Naga_100119g17 [Nannochlorops... [more]
gi|585099865|gb|EWM20344.1|7.107e-5235.50hypothetical protein Naga_100252g10 [Nannochlorops... [more]
gi|553184915|ref|XP_005854167.1|8.126e-2436.26hypothetical protein NGA_0179802 [Nannochloropsis ... [more]
gi|585107806|gb|EWM25935.1|1.595e-1731.69hypothetical protein Naga_100134g8 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1441rna1441Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications