EWM29248.1, cds1424 (CDS) Nannochloropsis gaditana

Overview
NameEWM29248.1
Unique Namecds1424
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:603363..603827 +
Alignment locationCM002457.1:604057..604653 +
Alignment locationCM002457.1:604986..605082 +
Alignment locationCM002457.1:605200..605311 +
Alignment locationCM002457.1:605440..605608 +
Alignment locationCM002457.1:605723..605848 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29248.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100119g2.8006.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:603363..603827 +
CM002457.1supercontigCM002457.1:604057..604653 +
CM002457.1supercontigCM002457.1:604986..605082 +
CM002457.1supercontigCM002457.1:605200..605311 +
CM002457.1supercontigCM002457.1:605440..605608 +
CM002457.1supercontigCM002457.1:605723..605848 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009056catabolic process
GO:0006091generation of precursor metabolites and energy
GO:0005975carbohydrate metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR029058AB_hydrolase
Homology
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|585111770|gb|EWM29248.1| (hypothetical protein Naga_100119g2 [Nannochloropsis gaditana])

HSP 1 Score: 1062.75 bits (2747), Expect = 0.000e+0
Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0
Query:    1 MEVSAIRVAPQRERNDGRHRWDTWTQLLLHSQLASTTRNNLPAMKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARIPV 521
            MEVSAIRVAPQRERNDGRHRWDTWTQLLLHSQLASTTRNNLPAMKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARIPV
Sbjct:    1 MEVSAIRVAPQRERNDGRHRWDTWTQLLLHSQLASTTRNNLPAMKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARIPV 521          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|553182636|ref|XP_005853760.1| (hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526] >gi|422295302|gb|EKU22601.1| hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0
Identity = 309/311 (99.36%), Postives = 309/311 (99.36%), Query Frame = 0
Query:   44 MKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGS 354
            MKHSQHWRG GNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAP LTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGS
Sbjct:    1 MKHSQHWRGEGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPSLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGS 311          

HSP 2 Score: 271.937 bits (694), Expect = 5.673e-78
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0
Query:  353 GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVM 482
            G AHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV+
Sbjct:  393 GLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVL 522          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|299471414|emb|CBN79367.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 131.339 bits (329), Expect = 6.687e-29
Identity = 76/170 (44.71%), Postives = 108/170 (63.53%), Query Frame = 0
Query:  353 GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGD---ATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            G   D VT       PC+S+N+R    F TSF+LGDDM+PR +  S++RL++RLL  + +G    + G+ F  + S    V G  +Q V   Q T   E++       LT+PGRV++ KPR+L  GAT+K VMRGN++ED+LWQ+HDI +++SML HH LDKYI +L R+
Sbjct:  498 GIRRDGVTCVTLGCPPCLSQNLR--LPFVTSFVLGDDMVPRTSHESLRRLKRRLLQVMPKGKGLLSQGVAF--STSLFTDVAGVAMQGV--RQATTLGEDDAR-----LTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|224001770|ref|XP_002290557.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973979|gb|EED92309.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.842 bits (268), Expect = 4.026e-21
Identity = 66/172 (38.37%), Postives = 96/172 (55.81%), Query Frame = 0
Query:  353 GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGAT-IKEVM----RGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            G A D V+A    P PCIS N++    F  S I GDD++ RAT  ++ RL +R     S G         +  WM  VV  T+  + + Q +K E+E        L +PG V+ I+PR++ GG++ I EV     R +LR  VLWQ++D+ +S SM+KHHSLD++I  L R+
Sbjct:  421 GCARDRVSAICLGPPPCISSNLK--PSFVKSIIHGDDIVSRATQATLDRLYERARRGCSGG-----VLGRSVGWMTDVVSLTVSGMKS-QSSKNEQER-------LAVPGNVFLIRPRRMGGGSSSIHEVGGTGGRESLRAAVLWQLNDVLLSGSMIKHHSLDQHIRSLDRV 577          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|219127946|ref|XP_002184186.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404417|gb|EEC44364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 84.3445 bits (207), Expect = 1.280e-13
Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 0
Query:  351 LGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV---MRGN---LREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            L G   +  +A      P +S N+     F TS + GDD++ RA+  S+ RL KR    +  G+  G           G V  T+   +     K      EG    L +PGR Y I+PR+L    +I EV   ++G    LR  VLWQ++D+ +S+S+ KHH L+ YI  L R+
Sbjct:  360 LQGLGKERCSAVTLGAPPSMSANVPA--EFVTSILYGDDVVGRASPASLTRLLKRTHRVLKRGNMLGF----------GRVTDTIS--LAKDSLKTHAHGSEGEEARLAVPGRAYLIRPRRLSHACSIHEVGAQLKGGREALRAAVLWQLNDVLLSKSLWKHHQLESYIQGLDRV 520          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|397633169|gb|EJK70865.1| (hypothetical protein THAOC_07741 [Thalassiosira oceanica])

HSP 1 Score: 83.5741 bits (205), Expect = 2.003e-13
Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 0
Query:  357 DNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQV--TKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGAT-IKEVMRG---NLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            D  +A      PC+S N+     F TS + GDD++ R +  S+  L                 +D  R  MKG        +++  V  T     +D+ G E L+LPGRV+ ++PR+L GG++ I EV  G   +LR  VLWQ+ DI +S+S+  HH ++ YI  L ++
Sbjct:  371 DRTSAHCIGCPPCVSANVPC--PFVTSIVNGDDVVSRMSQASLHSL-----------------YDRTRRCMKGGFIGKRLGIMSDAVSLTVSGIGKDKKGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKQSLRAAVLWQLKDILLSRSLWSHHQVEGYIRTLDKV 520          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|1210524392|dbj|GAX17121.1| (hypothetical protein FisN_5Hh507 [Fistulifera solaris])

HSP 1 Score: 79.7221 bits (195), Expect = 3.363e-12
Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 0
Query:  348 GFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV---MRGN---LREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            GF  G S     +A +    P  S N+  +  F  S + GDD++ R +  S+ RL +R    +    + G+      +WM+  V      +++H    + EEE       L +PGR + I+PR+L    ++ E+   ++G    LR  +LWQ+HD+ +++S  KHH L+ YI  L R+
Sbjct:  330 GFGAGRS-----SAVLLGAPPPFSANVDSM--FMVSLLYGDDILGRMSHESLDRLLQRTRRAMK---SKGLVLKQM-NWMRDTVSLATSNIMSHAYGSEGEEER------LAIPGRAFLIRPRRLGNVCSMHEIGLQLKGGREALRAAILWQLHDVLLTKSFWKHHELNSYIHGLDRV 490          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|1210515884|dbj|GAX25407.1| (hypothetical protein FisN_5Lh507 [Fistulifera solaris])

HSP 1 Score: 79.337 bits (194), Expect = 4.477e-12
Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 0
Query:  360 TAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV---MRGN---LREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            +A +    P  S N+  +  F  S + GDD++ R +  S+ RL +R    +    + G+      +WM+  V      +++H    + EEE       L  PGR + I+PR+L    ++ E+   ++G    LR  +LWQ+HD+ +++S+ KHH L+ YI  L R+
Sbjct:  303 SAVLLGAPPPFSANVDSM--FMVSLLYGDDILGRMSHKSLDRLLQRTRRAMK---SKGLVLKQM-NWMRDTVSLATSNIMSHAYGSEGEEE------RLAFPGRAFLIRPRRLGNVCSMHEIGLQLKGGREALRAAILWQLHDVLLTKSLWKHHELNSYIHGLDRV 456          
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|397619059|gb|EJK65133.1| (hypothetical protein THAOC_14050 [Thalassiosira oceanica])

HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-10
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 0
Query:  420 FDYARSWMKGVVGATLQQVVTHQV--TKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGAT-IKEVMRG---NLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519
            +D  R  MKG        +++  V  T     +D+ G E L+LPGRV+ ++PR+L GG++ I EV  G   +LR  VLWQ+ DI +S+S+  HH L+ YI  L ++
Sbjct:   10 YDRTRRCMKGGFIGKRLGIMSDAVSLTVSGIGKDKKGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKESLRAAVLWQLKDILLSRSLWSHHRLEGYIETLDKV 115          
The following BLAST results are available for this feature:
BLAST of EWM29248.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585111770|gb|EWM29248.1|0.000e+0100.00hypothetical protein Naga_100119g2 [Nannochloropsi... [more]
gi|553182636|ref|XP_005853760.1|5.673e-7899.36hypothetical protein NGA_0477710 [Nannochloropsis ... [more]
gi|299471414|emb|CBN79367.1|6.687e-2944.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|224001770|ref|XP_002290557.1|4.026e-2138.37predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219127946|ref|XP_002184186.1|1.280e-1332.57predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397633169|gb|EJK70865.1|2.003e-1332.54hypothetical protein THAOC_07741 [Thalassiosira oc... [more]
gi|1210524392|dbj|GAX17121.1|3.363e-1229.21hypothetical protein FisN_5Hh507 [Fistulifera sola... [more]
gi|1210515884|dbj|GAX25407.1|4.477e-1228.92hypothetical protein FisN_5Lh507 [Fistulifera sola... [more]
gi|397619059|gb|EJK65133.1|2.184e-1038.68hypothetical protein THAOC_14050 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1426rna1426Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications