EWM29248.1, cds1424 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|585111770|gb|EWM29248.1| (hypothetical protein Naga_100119g2 [Nannochloropsis gaditana]) HSP 1 Score: 1062.75 bits (2747), Expect = 0.000e+0 Identity = 521/521 (100.00%), Postives = 521/521 (100.00%), Query Frame = 0 Query: 1 MEVSAIRVAPQRERNDGRHRWDTWTQLLLHSQLASTTRNNLPAMKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARIPV 521 MEVSAIRVAPQRERNDGRHRWDTWTQLLLHSQLASTTRNNLPAMKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARIPV Sbjct: 1 MEVSAIRVAPQRERNDGRHRWDTWTQLLLHSQLASTTRNNLPAMKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARIPV 521
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|553182636|ref|XP_005853760.1| (hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526] >gi|422295302|gb|EKU22601.1| hypothetical protein NGA_0477710 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 618.231 bits (1593), Expect = 0.000e+0 Identity = 309/311 (99.36%), Postives = 309/311 (99.36%), Query Frame = 0 Query: 44 MKHSQHWRGGGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPPLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGS 354 MKHSQHWRG GNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAP LTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGS Sbjct: 1 MKHSQHWRGEGNLFVARQVAAEGITDAEGLGGRSSARRRGRFSSTRVTGLSSASLVQVAVGVILIISTAGAVSSHPPWTDSSPFQILSEWLDRSADSDLKGAGPPNIERAFKVVASSQQALKTMDGAAHSLYAYSHPRPPVTAWSRLEYSRASKAEKEMRLKAFRKAKLLEEAVYSSELAELSADGVGRREALTMVSELQSTQEVLAEDFLSVEGGTFRFLLLVDRDSRRLTLSVGDSLTWAQRLDVLRAPSLTVPLRPRGLLRRSMMVNPRLWAAAVTVIERVKAVLTTALRETCPGYALHVVGFSLGGS 311 HSP 2 Score: 271.937 bits (694), Expect = 5.673e-78 Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0 Query: 353 GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVM 482 G AHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV+ Sbjct: 393 GLAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVL 522
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|299471414|emb|CBN79367.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 131.339 bits (329), Expect = 6.687e-29 Identity = 76/170 (44.71%), Postives = 108/170 (63.53%), Query Frame = 0 Query: 353 GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGD---ATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEVMRGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 G D VT PC+S+N+R F TSF+LGDDM+PR + S++RL++RLL + +G + G+ F + S V G +Q V Q T E++ LT+PGRV++ KPR+L GAT+K VMRGN++ED+LWQ+HDI +++SML HH LDKYI +L R+ Sbjct: 498 GIRRDGVTCVTLGCPPCLSQNLR--LPFVTSFVLGDDMVPRTSHESLRRLKRRLLQVMPKGKGLLSQGVAF--STSLFTDVAGVAMQGV--RQATTLGEDDAR-----LTVPGRVWFAKPRRLKNGATLKRVMRGNVKEDMLWQLHDIMLTKSMLSHHRLDKYIKILDRV 656
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|224001770|ref|XP_002290557.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973979|gb|EED92309.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 107.842 bits (268), Expect = 4.026e-21 Identity = 66/172 (38.37%), Postives = 96/172 (55.81%), Query Frame = 0 Query: 353 GSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGAT-IKEVM----RGNLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 G A D V+A P PCIS N++ F S I GDD++ RAT ++ RL +R S G + WM VV T+ + + Q +K E+E L +PG V+ I+PR++ GG++ I EV R +LR VLWQ++D+ +S SM+KHHSLD++I L R+ Sbjct: 421 GCARDRVSAICLGPPPCISSNLK--PSFVKSIIHGDDIVSRATQATLDRLYERARRGCSGG-----VLGRSVGWMTDVVSLTVSGMKS-QSSKNEQER-------LAVPGNVFLIRPRRMGGGSSSIHEVGGTGGRESLRAAVLWQLNDVLLSGSMIKHHSLDQHIRSLDRV 577
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|219127946|ref|XP_002184186.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404417|gb|EEC44364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 84.3445 bits (207), Expect = 1.280e-13 Identity = 57/175 (32.57%), Postives = 84/175 (48.00%), Query Frame = 0 Query: 351 LGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV---MRGN---LREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 L G + +A P +S N+ F TS + GDD++ RA+ S+ RL KR + G+ G G V T+ + K EG L +PGR Y I+PR+L +I EV ++G LR VLWQ++D+ +S+S+ KHH L+ YI L R+ Sbjct: 360 LQGLGKERCSAVTLGAPPSMSANVPA--EFVTSILYGDDVVGRASPASLTRLLKRTHRVLKRGNMLGF----------GRVTDTIS--LAKDSLKTHAHGSEGEEARLAVPGRAYLIRPRRLSHACSIHEVGAQLKGGREALRAAVLWQLNDVLLSKSLWKHHQLESYIQGLDRV 520
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|397633169|gb|EJK70865.1| (hypothetical protein THAOC_07741 [Thalassiosira oceanica]) HSP 1 Score: 83.5741 bits (205), Expect = 2.003e-13 Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 0 Query: 357 DNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQV--TKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGAT-IKEVMRG---NLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 D +A PC+S N+ F TS + GDD++ R + S+ L +D R MKG +++ V T +D+ G E L+LPGRV+ ++PR+L GG++ I EV G +LR VLWQ+ DI +S+S+ HH ++ YI L ++ Sbjct: 371 DRTSAHCIGCPPCVSANVPC--PFVTSIVNGDDVVSRMSQASLHSL-----------------YDRTRRCMKGGFIGKRLGIMSDAVSLTVSGIGKDKKGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKQSLRAAVLWQLKDILLSRSLWSHHQVEGYIRTLDKV 520
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|1210524392|dbj|GAX17121.1| (hypothetical protein FisN_5Hh507 [Fistulifera solaris]) HSP 1 Score: 79.7221 bits (195), Expect = 3.363e-12 Identity = 52/178 (29.21%), Postives = 88/178 (49.44%), Query Frame = 0 Query: 348 GFSLGGSAHDNVTAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV---MRGN---LREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 GF G S +A + P S N+ + F S + GDD++ R + S+ RL +R + + G+ +WM+ V +++H + EEE L +PGR + I+PR+L ++ E+ ++G LR +LWQ+HD+ +++S KHH L+ YI L R+ Sbjct: 330 GFGAGRS-----SAVLLGAPPPFSANVDSM--FMVSLLYGDDILGRMSHESLDRLLQRTRRAMK---SKGLVLKQM-NWMRDTVSLATSNIMSHAYGSEGEEER------LAIPGRAFLIRPRRLGNVCSMHEIGLQLKGGREALRAAILWQLHDVLLTKSFWKHHELNSYIHGLDRV 490
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|1210515884|dbj|GAX25407.1| (hypothetical protein FisN_5Lh507 [Fistulifera solaris]) HSP 1 Score: 79.337 bits (194), Expect = 4.477e-12 Identity = 48/166 (28.92%), Postives = 84/166 (50.60%), Query Frame = 0 Query: 360 TAFVFAPSPCISKNIRGLRRFTTSFILGDDMMPRATALSIKRLEKRLLDYVSEGDATGIYFDYARSWMKGVVGATLQQVVTHQVTKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGATIKEV---MRGN---LREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 +A + P S N+ + F S + GDD++ R + S+ RL +R + + G+ +WM+ V +++H + EEE L PGR + I+PR+L ++ E+ ++G LR +LWQ+HD+ +++S+ KHH L+ YI L R+ Sbjct: 303 SAVLLGAPPPFSANVDSM--FMVSLLYGDDILGRMSHKSLDRLLQRTRRAMK---SKGLVLKQM-NWMRDTVSLATSNIMSHAYGSEGEEE------RLAFPGRAFLIRPRRLGNVCSMHEIGLQLKGGREALRAAILWQLHDVLLTKSLWKHHELNSYIHGLDRV 456
BLAST of EWM29248.1 vs. NCBI_GenBank
Match: gi|397619059|gb|EJK65133.1| (hypothetical protein THAOC_14050 [Thalassiosira oceanica]) HSP 1 Score: 68.5514 bits (166), Expect = 2.184e-10 Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 0 Query: 420 FDYARSWMKGVVGATLQQVVTHQV--TKKEEEEDEGGMEALTLPGRVYYIKPRKLHGGAT-IKEVMRG---NLREDVLWQIHDIFVSQSMLKHHSLDKYITVLARI 519 +D R MKG +++ V T +D+ G E L+LPGRV+ ++PR+L GG++ I EV G +LR VLWQ+ DI +S+S+ HH L+ YI L ++ Sbjct: 10 YDRTRRCMKGGFIGKRLGIMSDAVSLTVSGIGKDKKGDEKLSLPGRVFLVRPRRLGGGSSSIHEVNDGGKESLRAAVLWQLKDILLSRSLWSHHRLEGYIETLDKV 115 The following BLAST results are available for this feature:
BLAST of EWM29248.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 9
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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