EWM29269.1, cds1406 (CDS) Nannochloropsis gaditana

Overview
NameEWM29269.1
Unique Namecds1406
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:567414..567422 -
Alignment locationCM002457.1:566638..567197 -
Alignment locationCM002457.1:566345..566504 -
Alignment locationCM002457.1:565953..566265 -
Alignment locationCM002457.1:565259..565859 -
Alignment locationCM002457.1:565095..565206 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29269.1
Productrho gtpase-activating protein 12
Orig transcript idgnl|cribi|Naga_100029g17.9526.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:567414..567422 -
CM002457.1supercontigCM002457.1:566638..567197 -
CM002457.1supercontigCM002457.1:566345..566504 -
CM002457.1supercontigCM002457.1:565953..566265 -
CM002457.1supercontigCM002457.1:565259..565859 -
CM002457.1supercontigCM002457.1:565095..565206 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
Vocabulary: INTERPRO
TermDefinition
IPR008936Rho_GTPase_activation_prot
IPR000198RhoGAP_dom
Homology
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|585111792|gb|EWM29269.1| (rho gtpase-activating protein 12 [Nannochloropsis gaditana])

HSP 1 Score: 1203.73 bits (3113), Expect = 0.000e+0
Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0
Query:    1 MCLCVSCHGCHRQDEVVRVSVAKQEAHSRVGAWPCDRFPKMGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLKAAIGYGPSRGDHECSEKDDEGRASSPSRQQGEHQGSRFHFPHSPLSSSTPIFSSIRTRAGTKVGTEGLTGGRGGTREKSGAIRDCGTGEERLTGRFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQAPAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPSFPGISPQHPPAKPSRTTPQCTPSIEPSVIFWTRAILARLEGLEETYAAWSLVNNLTNARCSNCTAC 584
            MCLCVSCHGCHRQDEVVRVSVAKQEAHSRVGAWPCDRFPKMGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLKAAIGYGPSRGDHECSEKDDEGRASSPSRQQGEHQGSRFHFPHSPLSSSTPIFSSIRTRAGTKVGTEGLTGGRGGTREKSGAIRDCGTGEERLTGRFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQAPAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPSFPGISPQHPPAKPSRTTPQCTPSIEPSVIFWTRAILARLEGLEETYAAWSLVNNLTNARCSNCTAC
Sbjct:    1 MCLCVSCHGCHRQDEVVRVSVAKQEAHSRVGAWPCDRFPKMGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLKAAIGYGPSRGDHECSEKDDEGRASSPSRQQGEHQGSRFHFPHSPLSSSTPIFSSIRTRAGTKVGTEGLTGGRGGTREKSGAIRDCGTGEERLTGRFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQAPAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPSFPGISPQHPPAKPSRTTPQCTPSIEPSVIFWTRAILARLEGLEETYAAWSLVNNLTNARCSNCTAC 584          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1083295144|ref|XP_018596556.1| (PREDICTED: rho GTPase-activating protein 12, partial [Scleropages formosus])

HSP 1 Score: 88.5817 bits (218), Expect = 1.160e-14
Identity = 66/217 (30.41%), Postives = 103/217 (47.47%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASV----KTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIA 366
            A+RD G  ++++ G  L  L    S +V    +  +D +  T LGV+GLYRVSGN   V  L+  +     V+ E   S + D HV  GA+K   +E  EPL +Y  + DFV A   P                +   +    R L++ L    +D +  L  HL +V E  E NRMT +++A+  G  LLR       +++H + + + V + L+A
Sbjct:  638 AVRDKGYIKDQVFGCSLTSLCQRESTTVPNFVRMCIDHVEKTGLGVDGLYRVSGNLAVVQKLRFAVNHDEKVNLED--SKWEDIHVTTGALKMFFRELPEPLFTYSHFGDFVNAIKCP----------------DYKQRVHLIRDLLKQLPRPNQDTMQALFMHLRKVVENGELNRMTTQSVAIVFGPTLLRPETETANIAVHMVYQNQIVELILLA 836          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1158939480|ref|XP_020318115.1| (LOW QUALITY PROTEIN: rho GTPase-activating protein 12-like [Oncorhynchus kisutch])

HSP 1 Score: 88.1965 bits (217), Expect = 1.532e-14
Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    +ASV +     +D + + AL V+GLYRVSGN   +  L+  +  G  V  E       D HV  GA+K   +E  EPL +Y L+ DFV A   P          D   + +S       + LV+ L    +D +  L +HL +V +  E NRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  679 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHGRXVDLE--EGKMGDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 876          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|938055189|gb|KPP60467.1| (rho GTPase-activating protein 12-like [Scleropages formosus])

HSP 1 Score: 87.4261 bits (215), Expect = 1.737e-14
Identity = 66/222 (29.73%), Postives = 103/222 (46.40%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASV----KTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVL 371
            A+RD G  ++++ G  L  L    S +V    +  +D +  T LGV+GLYRVSGN   V  L+  +     V+ E   S + D HV  GA+K   +E  EPL +Y  + DFV A   P                +   +    R L++ L    +D +  L  HL +V E  E NRMT +++A+  G  LLR       +++H + + + V + L+    V 
Sbjct:  383 AVRDKGYIKDQVFGCSLTSLCQRESTTVPNFVRMCIDHVEKTGLGVDGLYRVSGNLAVVQKLRFAVNHDEKVNLED--SKWEDIHVTTGALKMFFRELPEPLFTYSHFGDFVNAIKCP----------------DYKQRVHLIRDLLKQLPRPNQDTMQALFMHLRKVVENGELNRMTTQSVAIVFGPTLLRPETETANIAVHMVYQNQIVELILLEYDAVF 586          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|658907851|ref|XP_008436655.1| (PREDICTED: rho GTPase-activating protein 12 isoform X1 [Poecilia reticulata])

HSP 1 Score: 87.8113 bits (216), Expect = 2.260e-14
Identity = 68/218 (31.19%), Postives = 103/218 (47.25%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASV----KTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    S SV    K  +D + +T L V+GLYRVSGN   +  L+  +     V      S + D HV  GA+K   +E  EPL +Y  + DFV A                 C +    +    + L++ L     D +  L RHL RV E  EANRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  639 AVRDKGYIKDQVFGCSLSSLCQRESTSVPNFVKMCIDHVENTGLSVDGLYRVSGNLAVIQKLRFAVNHDEKVDLND--SKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAI---------------KCSDYKQ-RVNSVKDLIKKLPKPNHDTMQALFRHLRRVIEHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQ--IVELILL 836          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329604|ref|XP_021444459.1| (rho GTPase-activating protein 12-like isoform X7 [Oncorhynchus mykiss])

HSP 1 Score: 87.4261 bits (215), Expect = 2.390e-14
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    +ASV +     +D + + AL V+GLYRVSGN   +  L+  +     V  E     + D HV  GA+K   +E  EPL +Y L+ DFV A   P          D   + +S       + LV+ L    +D +  L +HL +V +  E NRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  613 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 810          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329596|ref|XP_021444454.1| (rho GTPase-activating protein 12-like isoform X3 [Oncorhynchus mykiss])

HSP 1 Score: 87.8113 bits (216), Expect = 2.404e-14
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    +ASV +     +D + + AL V+GLYRVSGN   +  L+  +     V  E     + D HV  GA+K   +E  EPL +Y L+ DFV A   P          D   + +S       + LV+ L    +D +  L +HL +V +  E NRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  675 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 872          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329602|ref|XP_021444458.1| (rho GTPase-activating protein 12-like isoform X6 [Oncorhynchus mykiss])

HSP 1 Score: 87.4261 bits (215), Expect = 2.459e-14
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    +ASV +     +D + + AL V+GLYRVSGN   +  L+  +     V  E     + D HV  GA+K   +E  EPL +Y L+ DFV A   P          D   + +S       + LV+ L    +D +  L +HL +V +  E NRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  626 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 823          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329594|ref|XP_021444453.1| (rho GTPase-activating protein 12-like isoform X2 [Oncorhynchus mykiss])

HSP 1 Score: 87.4261 bits (215), Expect = 2.535e-14
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    +ASV +     +D + + AL V+GLYRVSGN   +  L+  +     V  E     + D HV  GA+K   +E  EPL +Y L+ DFV A   P          D   + +S       + LV+ L    +D +  L +HL +V +  E NRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  676 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 873          
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329592|ref|XP_021444452.1| (rho GTPase-activating protein 12-like isoform X1 [Oncorhynchus mykiss])

HSP 1 Score: 87.4261 bits (215), Expect = 2.547e-14
Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query:  155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
            A+RD G  ++++ G  L  L    +ASV +     +D + + AL V+GLYRVSGN   +  L+  +     V  E     + D HV  GA+K   +E  EPL +Y L+ DFV A   P          D   + +S       + LV+ L    +D +  L +HL +V +  E NRMT +++A+  G  LLR       +++H + + +  I++LI L
Sbjct:  683 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 880          
The following BLAST results are available for this feature:
BLAST of EWM29269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111792|gb|EWM29269.1|0.000e+0100.00rho gtpase-activating protein 12 [Nannochloropsis ... [more]
gi|1083295144|ref|XP_018596556.1|1.160e-1430.41PREDICTED: rho GTPase-activating protein 12, parti... [more]
gi|1158939480|ref|XP_020318115.1|1.532e-1431.19LOW QUALITY PROTEIN: rho GTPase-activating protein... [more]
gi|938055189|gb|KPP60467.1|1.737e-1429.73rho GTPase-activating protein 12-like [Scleropages... [more]
gi|658907851|ref|XP_008436655.1|2.260e-1431.19PREDICTED: rho GTPase-activating protein 12 isofor... [more]
gi|1211329604|ref|XP_021444459.1|2.390e-1430.73rho GTPase-activating protein 12-like isoform X7 [... [more]
gi|1211329596|ref|XP_021444454.1|2.404e-1430.73rho GTPase-activating protein 12-like isoform X3 [... [more]
gi|1211329602|ref|XP_021444458.1|2.459e-1430.73rho GTPase-activating protein 12-like isoform X6 [... [more]
gi|1211329594|ref|XP_021444453.1|2.535e-1430.73rho GTPase-activating protein 12-like isoform X2 [... [more]
gi|1211329592|ref|XP_021444452.1|2.547e-1430.73rho GTPase-activating protein 12-like isoform X1 [... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1408rna1408Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications