EWM29269.1, cds1406 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|585111792|gb|EWM29269.1| (rho gtpase-activating protein 12 [Nannochloropsis gaditana]) HSP 1 Score: 1203.73 bits (3113), Expect = 0.000e+0 Identity = 584/584 (100.00%), Postives = 584/584 (100.00%), Query Frame = 0
Query: 1 MCLCVSCHGCHRQDEVVRVSVAKQEAHSRVGAWPCDRFPKMGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLKAAIGYGPSRGDHECSEKDDEGRASSPSRQQGEHQGSRFHFPHSPLSSSTPIFSSIRTRAGTKVGTEGLTGGRGGTREKSGAIRDCGTGEERLTGRFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQAPAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPSFPGISPQHPPAKPSRTTPQCTPSIEPSVIFWTRAILARLEGLEETYAAWSLVNNLTNARCSNCTAC 584
MCLCVSCHGCHRQDEVVRVSVAKQEAHSRVGAWPCDRFPKMGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLKAAIGYGPSRGDHECSEKDDEGRASSPSRQQGEHQGSRFHFPHSPLSSSTPIFSSIRTRAGTKVGTEGLTGGRGGTREKSGAIRDCGTGEERLTGRFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQAPAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPSFPGISPQHPPAKPSRTTPQCTPSIEPSVIFWTRAILARLEGLEETYAAWSLVNNLTNARCSNCTAC
Sbjct: 1 MCLCVSCHGCHRQDEVVRVSVAKQEAHSRVGAWPCDRFPKMGDDAYRHNTHHHHAGHKKGSFLNKLFARQSSLKAAIGYGPSRGDHECSEKDDEGRASSPSRQQGEHQGSRFHFPHSPLSSSTPIFSSIRTRAGTKVGTEGLTGGRGGTREKSGAIRDCGTGEERLTGRFLPPLTPAASASVKTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEHEPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVLFPADAQASKKQAPAKPFHLPRSVKSAPPGREACHFFSLTDEMARRTAPLSMRTAEEGIDGEHCAGASVTLKPPPKPLGRPPNPLMTGSSSRQEHCLKMDHGRNRSHVNQGNMATGHVMDCAMNREEIRKKDLAIAPEVWKVSTGLPSFPGISPQHPPAKPSRTTPQCTPSIEPSVIFWTRAILARLEGLEETYAAWSLVNNLTNARCSNCTAC 584
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1083295144|ref|XP_018596556.1| (PREDICTED: rho GTPase-activating protein 12, partial [Scleropages formosus]) HSP 1 Score: 88.5817 bits (218), Expect = 1.160e-14 Identity = 66/217 (30.41%), Postives = 103/217 (47.47%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASV----KTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIA 366
A+RD G ++++ G L L S +V + +D + T LGV+GLYRVSGN V L+ + V+ E S + D HV GA+K +E EPL +Y + DFV A P + + R L++ L +D + L HL +V E E NRMT +++A+ G LLR +++H + + + V + L+A
Sbjct: 638 AVRDKGYIKDQVFGCSLTSLCQRESTTVPNFVRMCIDHVEKTGLGVDGLYRVSGNLAVVQKLRFAVNHDEKVNLED--SKWEDIHVTTGALKMFFRELPEPLFTYSHFGDFVNAIKCP----------------DYKQRVHLIRDLLKQLPRPNQDTMQALFMHLRKVVENGELNRMTTQSVAIVFGPTLLRPETETANIAVHMVYQNQIVELILLA 836
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1158939480|ref|XP_020318115.1| (LOW QUALITY PROTEIN: rho GTPase-activating protein 12-like [Oncorhynchus kisutch]) HSP 1 Score: 88.1965 bits (217), Expect = 1.532e-14 Identity = 68/218 (31.19%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L +ASV + +D + + AL V+GLYRVSGN + L+ + G V E D HV GA+K +E EPL +Y L+ DFV A P D + +S + LV+ L +D + L +HL +V + E NRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 679 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHGRXVDLE--EGKMGDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 876
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|938055189|gb|KPP60467.1| (rho GTPase-activating protein 12-like [Scleropages formosus]) HSP 1 Score: 87.4261 bits (215), Expect = 1.737e-14 Identity = 66/222 (29.73%), Postives = 103/222 (46.40%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASV----KTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIALCPVL 371
A+RD G ++++ G L L S +V + +D + T LGV+GLYRVSGN V L+ + V+ E S + D HV GA+K +E EPL +Y + DFV A P + + R L++ L +D + L HL +V E E NRMT +++A+ G LLR +++H + + + V + L+ V
Sbjct: 383 AVRDKGYIKDQVFGCSLTSLCQRESTTVPNFVRMCIDHVEKTGLGVDGLYRVSGNLAVVQKLRFAVNHDEKVNLED--SKWEDIHVTTGALKMFFRELPEPLFTYSHFGDFVNAIKCP----------------DYKQRVHLIRDLLKQLPRPNQDTMQALFMHLRKVVENGELNRMTTQSVAIVFGPTLLRPETETANIAVHMVYQNQIVELILLEYDAVF 586
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|658907851|ref|XP_008436655.1| (PREDICTED: rho GTPase-activating protein 12 isoform X1 [Poecilia reticulata]) HSP 1 Score: 87.8113 bits (216), Expect = 2.260e-14 Identity = 68/218 (31.19%), Postives = 103/218 (47.25%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASV----KTALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L S SV K +D + +T L V+GLYRVSGN + L+ + V S + D HV GA+K +E EPL +Y + DFV A C + + + L++ L D + L RHL RV E EANRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 639 AVRDKGYIKDQVFGCSLSSLCQRESTSVPNFVKMCIDHVENTGLSVDGLYRVSGNLAVIQKLRFAVNHDEKVDLND--SKWEDIHVTTGALKMFFRELPEPLFTYGSFNDFVNAI---------------KCSDYKQ-RVNSVKDLIKKLPKPNHDTMQALFRHLRRVIEHGEANRMTTQSVAIVFGPTLLRPETETGNIAVHMVYQNQ--IVELILL 836
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329604|ref|XP_021444459.1| (rho GTPase-activating protein 12-like isoform X7 [Oncorhynchus mykiss]) HSP 1 Score: 87.4261 bits (215), Expect = 2.390e-14 Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L +ASV + +D + + AL V+GLYRVSGN + L+ + V E + D HV GA+K +E EPL +Y L+ DFV A P D + +S + LV+ L +D + L +HL +V + E NRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 613 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 810
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329596|ref|XP_021444454.1| (rho GTPase-activating protein 12-like isoform X3 [Oncorhynchus mykiss]) HSP 1 Score: 87.8113 bits (216), Expect = 2.404e-14 Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L +ASV + +D + + AL V+GLYRVSGN + L+ + V E + D HV GA+K +E EPL +Y L+ DFV A P D + +S + LV+ L +D + L +HL +V + E NRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 675 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 872
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329602|ref|XP_021444458.1| (rho GTPase-activating protein 12-like isoform X6 [Oncorhynchus mykiss]) HSP 1 Score: 87.4261 bits (215), Expect = 2.459e-14 Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L +ASV + +D + + AL V+GLYRVSGN + L+ + V E + D HV GA+K +E EPL +Y L+ DFV A P D + +S + LV+ L +D + L +HL +V + E NRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 626 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 823
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329594|ref|XP_021444453.1| (rho GTPase-activating protein 12-like isoform X2 [Oncorhynchus mykiss]) HSP 1 Score: 87.4261 bits (215), Expect = 2.535e-14 Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L +ASV + +D + + AL V+GLYRVSGN + L+ + V E + D HV GA+K +E EPL +Y L+ DFV A P D + +S + LV+ L +D + L +HL +V + E NRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 676 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 873
BLAST of EWM29269.1 vs. NCBI_GenBank
Match: gi|1211329592|ref|XP_021444452.1| (rho GTPase-activating protein 12-like isoform X1 [Oncorhynchus mykiss]) HSP 1 Score: 87.4261 bits (215), Expect = 2.547e-14 Identity = 67/218 (30.73%), Postives = 107/218 (49.08%), Query Frame = 0
Query: 155 AIRDCGTGEERLTGRFLPPLTPAASASVKT----ALDFLGSTALGVEGLYRVSGNKLDVDSLKALMAEGLLVSAETLRSHYPDKHVVAGAIKKVLQEH-EPLLSYRLYADFVAASFNPTAGPLEGNEGDRACKEESGGKEGRYRALVQDLSPAPRDLLGHLMRHLVRVAERKEANRMTPENLAVTVGLHLLRKSESVTEVSIHQLEKERAVIMDLIAL 367
A+RD G ++++ G L L +ASV + +D + + AL V+GLYRVSGN + L+ + V E + D HV GA+K +E EPL +Y L+ DFV A P D + +S + LV+ L +D + L +HL +V + E NRMT +++A+ G LLR +++H + + + I++LI L
Sbjct: 683 AVRDKGYIKDQVFGCSLSDLCQRENASVPSFVTMCIDHMENNALNVDGLYRVSGNLAVIQKLRFAVNHDEKVDLE--EGKWEDIHVTTGALKMFFRELPEPLFTYNLFHDFVNAIKIP----------DYMQRVQS------IKELVKQLPKPNQDTMQALFKHLRKVIDHGEENRMTTQSVAIVFGPTLLRPETETWNMAVHMVYQNQ--IVELILL 880 The following BLAST results are available for this feature:
BLAST of EWM29269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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