EWM29279.1, cds1380 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|585111802|gb|EWM29279.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana]) HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0 Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query: 1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSFGGSSFGGVEESGSANPSYADDPSAPGTGGGFDTGGDFLSPALGASEVNVLVQRDPIQRQGRSVRISFELEKHRGLECDGPVNLLNMGGWMERCGFDSQERPGSRTRRDVGYRCPLWTPRHFTPKKSSEEGKRFHAYCVRKPCKDQRKVRFHNLQCL 319
MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSFGGSSFGGVEESGSANPSYADDPSAPGTGGGFDTGGDFLSPALGASEVNVLVQRDPIQRQGRSVRISFELEKHRGLECDGPVNLLNMGGWMERCGFDSQERPGSRTRRDVGYRCPLWTPRHFTPKKSSEEGKRFHAYCVRKPCKDQRKVRFHNLQCL
Sbjct: 1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSFGGSSFGGVEESGSANPSYADDPSAPGTGGGFDTGGDFLSPALGASEVNVLVQRDPIQRQGRSVRISFELEKHRGLECDGPVNLLNMGGWMERCGFDSQERPGSRTRRDVGYRCPLWTPRHFTPKKSSEEGKRFHAYCVRKPCKDQRKVRFHNLQCL 319
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|676383005|ref|XP_009034781.1| (hypothetical protein AURANDRAFT_7941, partial [Aureococcus anophagefferens] >gi|323454196|gb|EGB10066.1| hypothetical protein AURANDRAFT_7941, partial [Aureococcus anophagefferens]) HSP 1 Score: 187.963 bits (476), Expect = 2.505e-56 Identity = 88/131 (67.18%), Postives = 106/131 (80.92%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFA 134
REPCPYRI+DD+GGA+ MG++GG IWH+ KG RNAPK + G I VK RAP+VGG FAVWG FA FDCS+ A+R KEDPWN+IL+GA TGG+LA RAGPKAAGKNA++GG++LA+IEG I ITK A
Sbjct: 1 REPCPYRILDDIGGAYAMGAVGGSIWHFVKGWRNAPKNQGFSGAIEQVKVRAPVVGGNFAVWGGLFACFDCSLVAVRHKEDPWNSILAGAATGGVLAARAGPKAAGKNALVGGVLLALIEGLGILITKMMA 131
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1072231410|gb|OEU16142.1| (Tim17-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 187.193 bits (474), Expect = 1.012e-54 Identity = 96/162 (59.26%), Postives = 118/162 (72.84%), Query Frame = 0
Query: 1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSA--STPEMGAPALPDPTLPPTGPGML 160
M REPCP+R+VDDVGGAFCMG+IGGG+WH KG R AP G R G +S+V ARAP++GG FAVWG FA FDCS+ A+R+KEDPWN+I+SGA TGG+LA+RAGP+AA A+IGG++LA+IEG I TK AP + M DPT PPT G+
Sbjct: 7 MADREPCPWRVVDDVGGAFCMGNIGGGMWHSIKGARMAPAGARFAGSLSAVSARAPVLGGQFAVWGGLFACFDCSLTALRQKEDPWNSIVSGAATGGVLAVRAGPQAAASAALIGGVLLALIEGMGIMFTKMTAPPSPDDMLAMQQQQSFDPTAPPTQGGLF 168
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1183366309|gb|ORX92603.1| (mitochondrial import inner membrane translocase, subunit Tim17/22 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 184.111 bits (466), Expect = 1.628e-54 Identity = 86/148 (58.11%), Postives = 113/148 (76.35%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPT 151
R+PCP+ I++DVGGAF MG++GGGIWH KG++N+P+GER+ G ++SVKARAP++GG FAVWG F++FDC+ IR+KEDPWN+ILSG TGG+LA R G KAA +A +GG++LAMIEG IAIT+ FA P +P PT
Sbjct: 9 RDPCPWVILNDVGGAFVMGAVGGGIWHSVKGIKNSPRGERISGALTSVKARAPVLGGNFAVWGGLFSTFDCAFKGIRQKEDPWNSILSGTLTGGVLAARGGVKAAATSAAVGGVLLAMIEGLGIAITRMFAEQNRPVMPQVPDIPAPT 156
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|545710286|ref|XP_005707451.1| (mitochondrial protein translocase, MPT family [Galdieria sulphuraria] >gi|452823925|gb|EME30931.1| mitochondrial protein translocase, MPT family [Galdieria sulphuraria]) HSP 1 Score: 185.267 bits (469), Expect = 2.433e-54 Identity = 83/138 (60.14%), Postives = 110/138 (79.71%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPE 141
REPCP+RI+DD+GGA+ MGSIGG +WH+FKG RN+PKG RLRG + +VK R+P++GG FAVWG F++FDC++A IR KEDPWNAI+SGA TGG+LA R+G A ++A IGG++LA+IEG I +T+ A +PE
Sbjct: 8 REPCPHRILDDIGGAYAMGSIGGALWHFFKGARNSPKGARLRGAVDAVKLRSPVLGGNFAVWGGLFSTFDCALAGIRHKEDPWNAIMSGAITGGVLAARSGVGGATRSAAIGGILLALIEGMGILLTRMTADLGPSPE 145
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1183372370|gb|ORX98140.1| (mitochondrial import inner membrane translocase, subunit Tim17/22 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 183.341 bits (464), Expect = 3.511e-54 Identity = 85/148 (57.43%), Postives = 114/148 (77.03%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPT 151
R+PCP+ I++D+GGAF MG++GGGIWH KG++N+PKGER+ G ++SVKARAP++GG FAVWG F++FDC+ IR+KEDPWN+ILSG TGG+LA R G KAA +AV+GG++LAMIEG IA+T+ FA P +P P+
Sbjct: 9 RDPCPWVILNDIGGAFVMGAVGGGIWHSVKGIKNSPKGERISGALTSVKARAPVLGGNFAVWGGLFSTFDCAFKGIRQKEDPWNSILSGTLTGGVLAARGGFKAAATSAVVGGVLLAMIEGLGIAMTRMFAEQNRPIMPQVPDIPAPS 156
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|546300541|ref|XP_005711142.1| (unnamed protein product [Chondrus crispus] >gi|507107353|emb|CDF40848.1| unnamed protein product [Chondrus crispus]) HSP 1 Score: 183.341 bits (464), Expect = 5.780e-54 Identity = 84/129 (65.12%), Postives = 107/129 (82.95%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKF 132
REPCP+RI+DDVGGAF MG+IGG IWH+ KG RN+P+G R G I +VK RAP +GG+FAVWG F++FDCS+ IR KEDPWN+I SGA TGG+LA R+G +AAGK+A +GG++LA+IEG SIAIT++
Sbjct: 14 REPCPHRIIDDVGGAFGMGAIGGSIWHFLKGARNSPQGARFIGAIDAVKVRAPALGGSFAVWGGLFSTFDCSLQGIRGKEDPWNSIASGALTGGVLASRSGMRAAGKSAAVGGVLLALIEGISIAITRY 142
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1173946897|gb|OQR95370.1| (mitochondrial protein translocase, MPT family [Thraustotheca clavata]) HSP 1 Score: 180.259 bits (456), Expect = 6.050e-53 Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP 135
REPCPYRI++D+GGAF MG++GGGI+H KG RN+P GER RG + +VKAR+PL+ G FA+WG F+SFDCS+AAIR+KEDPWN+I +GA TGG LAIR+GP+ A AVIGG +LA+IEG I + K P
Sbjct: 3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGALYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAATQAVIGGALLALIEGLGIMLGKMLTP 134
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1173942331|gb|OQR91351.1| (mitochondrial protein translocase, MPT family [Achlya hypogyna]) HSP 1 Score: 179.489 bits (454), Expect = 1.222e-52 Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP 135
REPCPYRI++D+GGAF MG++GGGI+H KG RN+P GER RG + +VKAR+PL+ G FA+WG F+SFDCS+AAIR+KEDPWN+I +GA TGG LAIR+GP+ A AVIGG +LA+IEG I + K P
Sbjct: 3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSISAGALTGGALAIRSGPRVAVTQAVIGGALLALIEGLGIMLGKMLTP 134
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|669145516|ref|XP_008608320.1| (hypothetical protein SDRG_04423 [Saprolegnia diclina VS20] >gi|530739751|gb|EQC37993.1| hypothetical protein SDRG_04423 [Saprolegnia diclina VS20]) HSP 1 Score: 179.489 bits (454), Expect = 1.290e-52 Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query: 4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP 135
REPCPYRI++D+GGAF MG++GGGI+H KG RN+P GER RG + +VKAR+PL+ G FA+WG F+SFDCS+AAIR+KEDPWN+I +GA TGG LAIR+GP+ A AVIGG +LA+IEG I + K P
Sbjct: 3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAFTQAVIGGALLALIEGLGIMVGKMLTP 134 The following BLAST results are available for this feature:
BLAST of EWM29279.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|