EWM29279.1, cds1380 (CDS) Nannochloropsis gaditana

Overview
NameEWM29279.1
Unique Namecds1380
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:495652..495829 -
Alignment locationCM002457.1:495362..495429 -
Alignment locationCM002457.1:495073..495219 -
Alignment locationCM002457.1:494719..494944 -
Alignment locationCM002457.1:494334..494630 -
Alignment locationCM002457.1:494205..494248 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29279.1
ProductMitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Orig transcript idgnl|cribi|Naga_100029g41.9536.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:495652..495829 -
CM002457.1supercontigCM002457.1:495362..495429 -
CM002457.1supercontigCM002457.1:495073..495219 -
CM002457.1supercontigCM002457.1:494719..494944 -
CM002457.1supercontigCM002457.1:494334..494630 -
CM002457.1supercontigCM002457.1:494205..494248 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0006886intracellular protein transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0015450P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005744TIM23 mitochondrial import inner membrane translocase complex
Vocabulary: INTERPRO
TermDefinition
IPR005678Tim17
IPR003397Tim17/Tim22/Tim23/PMP24
Homology
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|585111802|gb|EWM29279.1| (Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24 [Nannochloropsis gaditana])

HSP 1 Score: 648.277 bits (1671), Expect = 0.000e+0
Identity = 319/319 (100.00%), Postives = 319/319 (100.00%), Query Frame = 0
Query:    1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSFGGSSFGGVEESGSANPSYADDPSAPGTGGGFDTGGDFLSPALGASEVNVLVQRDPIQRQGRSVRISFELEKHRGLECDGPVNLLNMGGWMERCGFDSQERPGSRTRRDVGYRCPLWTPRHFTPKKSSEEGKRFHAYCVRKPCKDQRKVRFHNLQCL 319
            MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSFGGSSFGGVEESGSANPSYADDPSAPGTGGGFDTGGDFLSPALGASEVNVLVQRDPIQRQGRSVRISFELEKHRGLECDGPVNLLNMGGWMERCGFDSQERPGSRTRRDVGYRCPLWTPRHFTPKKSSEEGKRFHAYCVRKPCKDQRKVRFHNLQCL
Sbjct:    1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPTLPPTGPGMLSSFGGSSFGGVEESGSANPSYADDPSAPGTGGGFDTGGDFLSPALGASEVNVLVQRDPIQRQGRSVRISFELEKHRGLECDGPVNLLNMGGWMERCGFDSQERPGSRTRRDVGYRCPLWTPRHFTPKKSSEEGKRFHAYCVRKPCKDQRKVRFHNLQCL 319          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|676383005|ref|XP_009034781.1| (hypothetical protein AURANDRAFT_7941, partial [Aureococcus anophagefferens] >gi|323454196|gb|EGB10066.1| hypothetical protein AURANDRAFT_7941, partial [Aureococcus anophagefferens])

HSP 1 Score: 187.963 bits (476), Expect = 2.505e-56
Identity = 88/131 (67.18%), Postives = 106/131 (80.92%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFA 134
            REPCPYRI+DD+GGA+ MG++GG IWH+ KG RNAPK +   G I  VK RAP+VGG FAVWG  FA FDCS+ A+R KEDPWN+IL+GA TGG+LA RAGPKAAGKNA++GG++LA+IEG  I ITK  A
Sbjct:    1 REPCPYRILDDIGGAYAMGAVGGSIWHFVKGWRNAPKNQGFSGAIEQVKVRAPVVGGNFAVWGGLFACFDCSLVAVRHKEDPWNSILAGAATGGVLAARAGPKAAGKNALVGGVLLALIEGLGILITKMMA 131          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1072231410|gb|OEU16142.1| (Tim17-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 187.193 bits (474), Expect = 1.012e-54
Identity = 96/162 (59.26%), Postives = 118/162 (72.84%), Query Frame = 0
Query:    1 MEGREPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSA--STPEMGAPALPDPTLPPTGPGML 160
            M  REPCP+R+VDDVGGAFCMG+IGGG+WH  KG R AP G R  G +S+V ARAP++GG FAVWG  FA FDCS+ A+R+KEDPWN+I+SGA TGG+LA+RAGP+AA   A+IGG++LA+IEG  I  TK  AP +      M      DPT PPT  G+ 
Sbjct:    7 MADREPCPWRVVDDVGGAFCMGNIGGGMWHSIKGARMAPAGARFAGSLSAVSARAPVLGGQFAVWGGLFACFDCSLTALRQKEDPWNSIVSGAATGGVLAVRAGPQAAASAALIGGVLLALIEGMGIMFTKMTAPPSPDDMLAMQQQQSFDPTAPPTQGGLF 168          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1183366309|gb|ORX92603.1| (mitochondrial import inner membrane translocase, subunit Tim17/22 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 184.111 bits (466), Expect = 1.628e-54
Identity = 86/148 (58.11%), Postives = 113/148 (76.35%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPT 151
            R+PCP+ I++DVGGAF MG++GGGIWH  KG++N+P+GER+ G ++SVKARAP++GG FAVWG  F++FDC+   IR+KEDPWN+ILSG  TGG+LA R G KAA  +A +GG++LAMIEG  IAIT+ FA          P +P PT
Sbjct:    9 RDPCPWVILNDVGGAFVMGAVGGGIWHSVKGIKNSPRGERISGALTSVKARAPVLGGNFAVWGGLFSTFDCAFKGIRQKEDPWNSILSGTLTGGVLAARGGVKAAATSAAVGGVLLAMIEGLGIAITRMFAEQNRPVMPQVPDIPAPT 156          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|545710286|ref|XP_005707451.1| (mitochondrial protein translocase, MPT family [Galdieria sulphuraria] >gi|452823925|gb|EME30931.1| mitochondrial protein translocase, MPT family [Galdieria sulphuraria])

HSP 1 Score: 185.267 bits (469), Expect = 2.433e-54
Identity = 83/138 (60.14%), Postives = 110/138 (79.71%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPE 141
            REPCP+RI+DD+GGA+ MGSIGG +WH+FKG RN+PKG RLRG + +VK R+P++GG FAVWG  F++FDC++A IR KEDPWNAI+SGA TGG+LA R+G   A ++A IGG++LA+IEG  I +T+  A    +PE
Sbjct:    8 REPCPHRILDDIGGAYAMGSIGGALWHFFKGARNSPKGARLRGAVDAVKLRSPVLGGNFAVWGGLFSTFDCALAGIRHKEDPWNAIMSGAITGGVLAARSGVGGATRSAAIGGILLALIEGMGILLTRMTADLGPSPE 145          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1183372370|gb|ORX98140.1| (mitochondrial import inner membrane translocase, subunit Tim17/22 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 183.341 bits (464), Expect = 3.511e-54
Identity = 85/148 (57.43%), Postives = 114/148 (77.03%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAPSASTPEMGAPALPDPT 151
            R+PCP+ I++D+GGAF MG++GGGIWH  KG++N+PKGER+ G ++SVKARAP++GG FAVWG  F++FDC+   IR+KEDPWN+ILSG  TGG+LA R G KAA  +AV+GG++LAMIEG  IA+T+ FA          P +P P+
Sbjct:    9 RDPCPWVILNDIGGAFVMGAVGGGIWHSVKGIKNSPKGERISGALTSVKARAPVLGGNFAVWGGLFSTFDCAFKGIRQKEDPWNSILSGTLTGGVLAARGGFKAAATSAVVGGVLLAMIEGLGIAMTRMFAEQNRPIMPQVPDIPAPS 156          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|546300541|ref|XP_005711142.1| (unnamed protein product [Chondrus crispus] >gi|507107353|emb|CDF40848.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 183.341 bits (464), Expect = 5.780e-54
Identity = 84/129 (65.12%), Postives = 107/129 (82.95%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKF 132
            REPCP+RI+DDVGGAF MG+IGG IWH+ KG RN+P+G R  G I +VK RAP +GG+FAVWG  F++FDCS+  IR KEDPWN+I SGA TGG+LA R+G +AAGK+A +GG++LA+IEG SIAIT++
Sbjct:   14 REPCPHRIIDDVGGAFGMGAIGGSIWHFLKGARNSPQGARFIGAIDAVKVRAPALGGSFAVWGGLFSTFDCSLQGIRGKEDPWNSIASGALTGGVLASRSGMRAAGKSAAVGGVLLALIEGISIAITRY 142          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1173946897|gb|OQR95370.1| (mitochondrial protein translocase, MPT family [Thraustotheca clavata])

HSP 1 Score: 180.259 bits (456), Expect = 6.050e-53
Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP 135
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AAIR+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   P
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGALYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAATQAVIGGALLALIEGLGIMLGKMLTP 134          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|1173942331|gb|OQR91351.1| (mitochondrial protein translocase, MPT family [Achlya hypogyna])

HSP 1 Score: 179.489 bits (454), Expect = 1.222e-52
Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP 135
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AAIR+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   P
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSISAGALTGGALAIRSGPRVAVTQAVIGGALLALIEGLGIMLGKMLTP 134          
BLAST of EWM29279.1 vs. NCBI_GenBank
Match: gi|669145516|ref|XP_008608320.1| (hypothetical protein SDRG_04423 [Saprolegnia diclina VS20] >gi|530739751|gb|EQC37993.1| hypothetical protein SDRG_04423 [Saprolegnia diclina VS20])

HSP 1 Score: 179.489 bits (454), Expect = 1.290e-52
Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 0
Query:    4 REPCPYRIVDDVGGAFCMGSIGGGIWHYFKGVRNAPKGERLRGGISSVKARAPLVGGAFAVWGLCFASFDCSIAAIRKKEDPWNAILSGACTGGLLAIRAGPKAAGKNAVIGGLVLAMIEGASIAITKFFAP 135
            REPCPYRI++D+GGAF MG++GGGI+H  KG RN+P GER RG + +VKAR+PL+ G FA+WG  F+SFDCS+AAIR+KEDPWN+I +GA TGG LAIR+GP+ A   AVIGG +LA+IEG  I + K   P
Sbjct:    3 REPCPYRIIEDMGGAFGMGAVGGGIFHSIKGARNSPPGERFRGAVYAVKARSPLLAGQFAIWGCLFSSFDCSLAAIRQKEDPWNSICAGALTGGALAIRSGPRVAFTQAVIGGALLALIEGLGIMVGKMLTP 134          
The following BLAST results are available for this feature:
BLAST of EWM29279.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111802|gb|EWM29279.1|0.000e+0100.00Mitochondrial inner membrane translocase subunit T... [more]
gi|676383005|ref|XP_009034781.1|2.505e-5667.18hypothetical protein AURANDRAFT_7941, partial [Aur... [more]
gi|1072231410|gb|OEU16142.1|1.012e-5459.26Tim17-domain-containing protein [Fragilariopsis cy... [more]
gi|1183366309|gb|ORX92603.1|1.628e-5458.11mitochondrial import inner membrane translocase, s... [more]
gi|545710286|ref|XP_005707451.1|2.433e-5460.14mitochondrial protein translocase, MPT family [Gal... [more]
gi|1183372370|gb|ORX98140.1|3.511e-5457.43mitochondrial import inner membrane translocase, s... [more]
gi|546300541|ref|XP_005711142.1|5.780e-5465.12unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|1173946897|gb|OQR95370.1|6.050e-5362.88mitochondrial protein translocase, MPT family [Thr... [more]
gi|1173942331|gb|OQR91351.1|1.222e-5262.88mitochondrial protein translocase, MPT family [Ach... [more]
gi|669145516|ref|XP_008608320.1|1.290e-5262.88hypothetical protein SDRG_04423 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1382rna1382Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications