EWM29308.1, cds1369 (CDS) Nannochloropsis gaditana

Overview
NameEWM29308.1
Unique Namecds1369
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:463044..463054 +
Alignment locationCM002457.1:463366..464176 +
Alignment locationCM002457.1:464260..465364 +
Alignment locationCM002457.1:465409..465545 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29308.1
Productfar upstream element binding protein 3
Orig transcript idgnl|cribi|Naga_100152g10.726.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:463044..463054 +
CM002457.1supercontigCM002457.1:463366..464176 +
CM002457.1supercontigCM002457.1:464260..465364 +
CM002457.1supercontigCM002457.1:465409..465545 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR004087KH_dom
Homology
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|585111832|gb|EWM29308.1| (far upstream element binding protein 3 [Nannochloropsis gaditana])

HSP 1 Score: 1374.76 bits (3557), Expect = 0.000e+0
Identity = 687/687 (100.00%), Postives = 687/687 (100.00%), Query Frame = 0
Query:    1 MLAKGFPVVAVVVSSPDKGNGQMSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQSSEYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGAAPPPPPQGGGYYPPPPGYQPQQPPPPGYPPPGYPQQPAQSDPYAAYYQQQQNQGPSPAQQQQQQQQQQQQPQHQPQHQPQPQQPQQQPAYASQTNGGDAAAAQQQQQQAAPAPAPTSSSDSASNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEGHGRHRGTGSDILELGDYKNGGNGRIIDHRNRVLQGSRGKCGEET 687
            MLAKGFPVVAVVVSSPDKGNGQMSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQSSEYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGAAPPPPPQGGGYYPPPPGYQPQQPPPPGYPPPGYPQQPAQSDPYAAYYQQQQNQGPSPAQQQQQQQQQQQQPQHQPQHQPQPQQPQQQPAYASQTNGGDAAAAQQQQQQAAPAPAPTSSSDSASNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEGHGRHRGTGSDILELGDYKNGGNGRIIDHRNRVLQGSRGKCGEET
Sbjct:    1 MLAKGFPVVAVVVSSPDKGNGQMSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQSSEYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGAAPPPPPQGGGYYPPPPGYQPQQPPPPGYPPPGYPQQPAQSDPYAAYYQQQQNQGPSPAQQQQQQQQQQQQPQHQPQHQPQPQQPQQQPAYASQTNGGDAAAAQQQQQQAAPAPAPTSSSDSASNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEGHGRHRGTGSDILELGDYKNGGNGRIIDHRNRVLQGSRGKCGEET 687          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|553188383|ref|XP_005854787.1| (hypothetical protein NGA_0401010 [Nannochloropsis gaditana CCMP526] >gi|422294276|gb|EKU21576.1| hypothetical protein NGA_0401010 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1136.71 bits (2939), Expect = 0.000e+0
Identity = 585/649 (90.14%), Postives = 585/649 (90.14%), Query Frame = 0
Query:   23 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQ----------------------------SSEYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGAAPPPPPQGGGYYPPPPGYQPQQPPPPGYPPPGYPQQPAQSDPYAAYYQQQQNQGPSPAQQQQQQQQQQQQPQHQPQHQPQPQQPQQQPAYASQTNGGDAAAAQQQQQQAAPAPAPTSSSDSASNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEG 643
            MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQ                            SSEYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVT                                    GGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGAAPPPPPQGGGYYPPPPGYQPQQPPPPGYPPPGYPQQPAQSDPYAAYYQQQQNQGPSPAQQQQQQQQQQQQPQHQPQHQPQPQQPQQQPAYASQTNGGDAAAAQQQQQQAAPAPAPTSSSDSASNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEG
Sbjct:    1 MSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQVDEAQAERSKPRAGTGGGGHYGGGGGGQSSEYGVAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVT------------------------------------GGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLMNEGCRDAHGNYIPYQPSPAFIVPVGPGGVPIMPGAAPPPPPQGGGYYPPPPGYQPQQPPPPGYPPPGYPQQPAQSDPYAAYYQQQQNQGPSPAQQQQQQQQQQQQPQHQPQHQPQPQQPQQQPAYASQTNGGDAAAAQQQQQQAAPAPAPTSSSDSASNGAVGGEAAYDPTQYWDQFWAYAVHYGEEYARKQYGTWAPPEG 613          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|553188591|ref|XP_005854823.1| (hypothetical protein NGA_0401020, partial [Nannochloropsis gaditana CCMP526] >gi|422294235|gb|EKU21535.1| hypothetical protein NGA_0401020, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 541.191 bits (1393), Expect = 0.000e+0
Identity = 271/277 (97.83%), Postives = 273/277 (98.56%), Query Frame = 0
Query:    1 MLAKGFPVVAVVVSSPDKGNGQMSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQSSE 277
            +  +GFPVVAVVVSSPDKGNGQMSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQ  E
Sbjct:   17 LKGRGFPVVAVVVSSPDKGNGQMSGLPDDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEPRKREKIFIPKDNPDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQEDMHVLIEGTEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENTRAVSVKGPTKEGVAEALQMIQGQVDE 293          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|1173935787|gb|OQR86849.1| (hypothetical protein ACHHYP_09835 [Achlya hypogyna])

HSP 1 Score: 265.388 bits (677), Expect = 6.455e-77
Identity = 175/434 (40.32%), Postives = 255/434 (58.76%), Query Frame = 0
Query:   28 DDAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEP--RKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEP--QEDMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPG-ENTRAVSVKG-PTKEGVAEAL-QMIQGQSSEYGV-------AATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGD-GPERARYEIETKLMNE 444
            +D +A+A+AIAARL  ++  +    G ++   D +   P  RKR+K++IP D  PD NF  LLIGPRGS QKR+++ +G+RI IRG  GS  E  P GEP   EDMHVLI   T+EQ+A A+ E+E ILF+P +AMRLK  QLR +AE           + G  +  HYGP      LG G    T  M +P ++VGL+IGRGGE I+ +  ++GC +QV++E + G  N R V + G P++  VA  +   I G   E G        A  L + VP++KVG IIGR G+T++ +Q+RTGAN+ +PS    + P++R + ++    +A E AR EIQ L+              PQG   + M +  ++VG++IGR GA ++ IQ R + RIQ+P   +P + P VR ++I GP     + A+ EI+T L+N+
Sbjct:    4 NDPVAKARAIAARLGLTVPSDNSVLGKRKSRFDDDPLHPDGRKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDLSGSRILIRGR-GSVKE--PTGEPDENEDMHVLITADTDEQIAKAQAEIEDILFNPEKAMRLKQEQLRQVAE-----------NNGSMELTHYGP------LG-GGNSTTFSMSVPRAVVGLIIGRGGETIRDLQNRSGCSIQVAREDDGGPPNERLVQIVGSPSQVEVARTMINNILGDRIEGGRDRRGDPPADALKLVVPNEKVGFIIGRQGATVKGVQQRTGANIVVPSIPDSENPSLRTLIITGTS-EAKEAARVEIQMLV-------NDQHQLLPQGANTIYMQLPNERVGVVIGRQGANVRAIQDRHDCRIQIPNHPDPGSMPEVRTISISGPTTQAVQNAKDEIDTILIND 408          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|953492383|emb|CEG45223.1| (far upstream element binding protein 3 [Plasmopara halstedii])

HSP 1 Score: 266.544 bits (680), Expect = 1.764e-76
Identity = 174/455 (38.24%), Postives = 253/455 (55.60%), Query Frame = 0
Query:   29 DAIARAKAIAARLTASLGPEGGGGGTKRRFGDGESEEP---------RKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEP--QEDMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETE--PGENTRAVSVKGPTKEGVAEALQMIQG------QSSEYGV--------------------AATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLM 442
            D +ARA+ IAARL A+  P G   G ++   +G+ +           +KR+K++IP D  PD NF  LLIGPRGS QKR+++ +GARI IRG   SK    P G+P   E++HVLI   T+E VA A+  VE ILF+P +AM+LK  QLR +AEL G  +   S     G E +   + S        +  + DMK+P  +VG +IGRGGE I+ +  K+G  +Q+ +E E  P    R V++ G  +E +A A ++IQ       Q+   GV                      ++ + VP+++VGLIIGRGG TI+ IQ+RTG +V IP       P +RL+T+     +A E AR EIQ+L++  PG     G  A   G+ + M +  D+VG+IIG+ G  IK IQ R   RIQ+P  A+P ++PPVR ++I GP      A+ E++  ++
Sbjct:    3 DPVARAREIAARLAATAIPGGDVLGKRKSRWEGDVDTSGRLAPGLGAKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKD---PTGDPDENEELHVLITADTDESVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNDTYS-----GHENYGSGLNSS----LNNDQSSFDMKVPRDLVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTADRFVNITG-NEETLANAQKLIQNLIDERQQNQTAGVFRERDDQDRMARYGGINPDGTESVEILVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDSTHPEMRLITIRGT-AEAKEAARFEIQSLVSEEPGQRYGYGTAA---GSTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADPGSNPPVRTISIQGPPQSLAIAKEEVDMVIL 440          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|325191228|emb|CCA26015.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 258.455 bits (659), Expect = 3.449e-74
Identity = 160/414 (38.65%), Postives = 235/414 (56.76%), Query Frame = 0
Query:   52 GGTKRRFGDGESEEPRKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEPQE--DMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEGHYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENT--RAVSVKGPTKEGVAEALQMIQ------------GQSSEYG-----VAATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLM 442
            G  K R+G  +    +KR+K++IP D  PD NF  LLIGPRGS QKR+++ +GA+I IRG   SK      GEP E  D+HVLI   +EE +A A+  +E+ILF+P +AM+LK  QLR +AELKG       A   G + GHYGP       G     +   M +P + VG +IGRGGE I+ + A++G  +Q+ +E E    T  R VS+ G T+E V  A ++IQ            G  + YG      + TL + VP+D+VGL+IGRGG+TIR+IQ RTG N+ +P       P +R +TV    M+A + A++EI  L+                 G+ + M +  D+VG++IG+ G  IK IQ R   R+Q+P   +  ++PPVR ++I G  +  +RA+ EI++ ++
Sbjct:   27 GKRKTRWGSEDPTAEKKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGAKILIRGKGSSKD---AFGEPDENDDLHVLITADSEEAIARAQASIEEILFNPQQAMKLKQEQLRKVAELKG-------AGVDGNEFGHYGP-------GSADGSQAYQMPVPRTYVGYIIGRGGETIRDLQARSGAHIQIVREEEGAAFTPDRFVSIAG-TEEAVESAKKLIQNLLDERASGGGSGDDARYGGSNPDGSETLEILVPNDRVGLVIGRGGATIRSIQVRTGTNITVPQTPDATNPTMRKITVKGT-MEAKDAAKNEILGLIQEN-----------NNTGSTIYMQVPNDRVGVVIGKKGETIKGIQDRNTVRVQIPQVPDVGSNPPVRTISIHGAPESLQRAKEEIDSVIL 410          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|566031368|gb|ETI54279.1| (hypothetical protein, variant 3 [Phytophthora parasitica P1569] >gi|568006295|gb|ETL80561.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568036144|gb|ETM33760.1| hypothetical protein, variant 3 [Phytophthora parasitica])

HSP 1 Score: 255.373 bits (651), Expect = 7.269e-73
Identity = 162/409 (39.61%), Postives = 234/409 (57.21%), Query Frame = 0
Query:   67 RKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEP--QEDMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEG-HYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENT--RAVSVKGPTKEGVAEALQMIQGQSSE---------------------YGV-----AATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLM 442
            +KR+K++IP D  PD NF  LLIGPRGS QKR+++ +GARI IRG   SK    P GEP   E++HVLI   T+E VA A+  VE ILF+P +AM+LK  QLR +AEL G  +    +   G + G HYGP       G  A+  + DMK+P  +VG +IGRGGE I+ +  K+G  +Q+ +E E    T  R V++ G  +E +  A ++IQ    E                     YG      + ++ + VP+++VGLIIGRGG TI+ IQ+RTG +V IP     + P+ RL+T+    M+A E A+ EIQ+L++  PG     G  +   G  + M +  D+VG+IIG+ G  IK IQ R   RIQ+P  A+  ++PPVR ++I GP      A+ E++  ++
Sbjct:    4 KKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKD---PTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYDSHAIGQNSGAHYGP-------GNDAQTSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDGSDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRGT-MEAKEAAKFEIQSLVSEEPGQRHGYGMAS---GQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 397          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|566031367|gb|ETI54278.1| (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >gi|568006294|gb|ETL80560.1| hypothetical protein, variant 2 [Phytophthora parasitica] >gi|568036143|gb|ETM33759.1| hypothetical protein, variant 2 [Phytophthora parasitica])

HSP 1 Score: 255.373 bits (651), Expect = 7.489e-73
Identity = 162/409 (39.61%), Postives = 234/409 (57.21%), Query Frame = 0
Query:   67 RKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEP--QEDMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEG-HYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENT--RAVSVKGPTKEGVAEALQMIQGQSSE---------------------YGV-----AATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLM 442
            +KR+K++IP D  PD NF  LLIGPRGS QKR+++ +GARI IRG   SK    P GEP   E++HVLI   T+E VA A+  VE ILF+P +AM+LK  QLR +AEL G  +    +   G + G HYGP       G  A+  + DMK+P  +VG +IGRGGE I+ +  K+G  +Q+ +E E    T  R V++ G  +E +  A ++IQ    E                     YG      + ++ + VP+++VGLIIGRGG TI+ IQ+RTG +V IP     + P+ RL+T+    M+A E A+ EIQ+L++  PG     G  +   G  + M +  D+VG+IIG+ G  IK IQ R   RIQ+P  A+  ++PPVR ++I GP      A+ E++  ++
Sbjct:    4 KKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKD---PTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYDSHAIGQNSGAHYGP-------GNDAQTSSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDGSDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRGT-MEAKEAAKFEIQSLVSEEPGQRHGYGMAS---GQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 397          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|675209865|ref|XP_008913817.1| (hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|567976793|gb|ETL27308.1| hypothetical protein, variant 3 [Phytophthora parasitica] >gi|568086006|gb|ETN00903.1| hypothetical protein, variant 3 [Phytophthora parasitica INRA-310] >gi|970660271|gb|KUF97834.1| Far upstream element-binding protein 3 [Phytophthora nicotianae])

HSP 1 Score: 255.373 bits (651), Expect = 7.657e-73
Identity = 162/409 (39.61%), Postives = 234/409 (57.21%), Query Frame = 0
Query:   67 RKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEP--QEDMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEG-HYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENT--RAVSVKGPTKEGVAEALQMIQGQSSE---------------------YGV-----AATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLM 442
            +KR+K++IP D  PD NF  LLIGPRGS QKR+++ +GARI IRG   SK    P GEP   E++HVLI   T+E VA A+  VE ILF+P +AM+LK  QLR +AEL G  +    +   G + G HYGP       G  A+  + DMK+P  +VG +IGRGGE I+ +  K+G  +Q+ +E E    T  R V++ G  +E +  A ++IQ    E                     YG      + ++ + VP+++VGLIIGRGG TI+ IQ+RTG +V IP     + P+ RL+T+    M+A E A+ EIQ+L++  PG     G  +   G  + M +  D+VG+IIG+ G  IK IQ R   RIQ+P  A+  ++PPVR ++I GP      A+ E++  ++
Sbjct:    4 KKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKD---PTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYDSHAIGQNSGAHYGP-------GNDAQASSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDGSDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRGT-MEAKEAAKFEIQSLVSEEPGQRHGYGMAS---GQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 397          
BLAST of EWM29308.1 vs. NCBI_GenBank
Match: gi|567948117|gb|ETK73876.1| (hypothetical protein, variant 3 [Phytophthora parasitica] >gi|570314370|gb|ETO62318.1| hypothetical protein, variant 3 [Phytophthora parasitica P1976] >gi|570938134|gb|ETP03391.1| hypothetical protein, variant 3 [Phytophthora parasitica CJ01A1] >gi|570968452|gb|ETP31571.1| hypothetical protein, variant 3 [Phytophthora parasitica P10297])

HSP 1 Score: 255.373 bits (651), Expect = 7.657e-73
Identity = 162/409 (39.61%), Postives = 234/409 (57.21%), Query Frame = 0
Query:   67 RKREKIFIPKDN-PDFNFFSLLIGPRGSTQKRLQENTGARINIRGSDGSKGEEAPEGEP--QEDMHVLIEG-TEEQVAAAKKEVEKILFDPAEAMRLKAAQLRNLAELKGGYSPGGSASGGGGDEG-HYGPVRSKPGLGFGAEPETGDMKIPSSMVGLVIGRGGENIQKITAKTGCFVQVSKETEPGENT--RAVSVKGPTKEGVAEALQMIQGQSSE---------------------YGV-----AATLTVPVPSDKVGLIIGRGGSTIRTIQERTGANVNIPSANQGDEPNVRLVTVSAPDMQAAEHARSEIQALLAGGPGGGGAMGGGAPQGGTALVMHIDQDKVGLIIGRSGAVIKEIQHRTNTRIQVPTTAEPNTHPPVRAVTIMGPGDGPERARYEIETKLM 442
            +KR+K++IP D  PD NF  LLIGPRGS QKR+++ +GARI IRG   SK    P GEP   E++HVLI   T+E VA A+  VE ILF+P +AM+LK  QLR +AEL G  +    +   G + G HYGP       G  A+  + DMK+P  +VG +IGRGGE I+ +  K+G  +Q+ +E E    T  R V++ G  +E +  A ++IQ    E                     YG      + ++ + VP+++VGLIIGRGG TI+ IQ+RTG +V IP     + P+ RL+T+    M+A E A+ EIQ+L++  PG     G  +   G  + M +  D+VG+IIG+ G  IK IQ R   RIQ+P  A+  ++PPVR ++I GP      A+ E++  ++
Sbjct:    4 KKRKKVYIPVDKYPDINFMGLLIGPRGSNQKRMEDESGARILIRGKGSSKD---PTGEPDENEELHVLITADTDEAVAKAQSAVEDILFNPQQAMKLKQEQLRKVAELNGTLNENYDSHAIGQNSGAHYGP-------GNDAQASSYDMKVPRELVGYIIGRGGETIRDLQMKSGAHIQIVREEEGAPQTPDRYVNIAG-NQEALDLAQRLIQNLIDERQQNQSAGGFRERDDRDRMARYGGINPDGSDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIPQTPDPNHPDKRLITIRGT-MEAKEAAKFEIQSLVSEEPGQRHGYGMAS---GQTIYMQVPNDRVGVIIGKRGETIKGIQDRHAVRIQIPQVADEGSNPPVRTISIQGPPQNLAGAKEEVDMVIL 397          
The following BLAST results are available for this feature:
BLAST of EWM29308.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111832|gb|EWM29308.1|0.000e+0100.00far upstream element binding protein 3 [Nannochlor... [more]
gi|553188383|ref|XP_005854787.1|0.000e+090.14hypothetical protein NGA_0401010 [Nannochloropsis ... [more]
gi|553188591|ref|XP_005854823.1|0.000e+097.83hypothetical protein NGA_0401020, partial [Nannoch... [more]
gi|1173935787|gb|OQR86849.1|6.455e-7740.32hypothetical protein ACHHYP_09835 [Achlya hypogyna... [more]
gi|953492383|emb|CEG45223.1|1.764e-7638.24far upstream element binding protein 3 [Plasmopara... [more]
gi|325191228|emb|CCA26015.1|3.449e-7438.65conserved hypothetical protein [Albugo laibachii N... [more]
gi|566031368|gb|ETI54279.1|7.269e-7339.61hypothetical protein, variant 3 [Phytophthora para... [more]
gi|566031367|gb|ETI54278.1|7.489e-7339.61hypothetical protein, variant 2 [Phytophthora para... [more]
gi|675209865|ref|XP_008913817.1|7.657e-7339.61hypothetical protein, variant 3 [Phytophthora para... [more]
gi|567948117|gb|ETK73876.1|7.657e-7339.61hypothetical protein, variant 3 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1371rna1371Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications