EWM29311.1, cds1363 (CDS) Nannochloropsis gaditana

Overview
NameEWM29311.1
Unique Namecds1363
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:444573..449396 -

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Properties
Property NameValue
Protein idEWM29311.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100152g4.729.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:444573..449396 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM29311.1 vs. NCBI_GenBank
Match: gi|585111835|gb|EWM29311.1| (hypothetical protein Naga_100152g4 [Nannochloropsis gaditana])

HSP 1 Score: 3274.18 bits (8488), Expect = 0.000e+0
Identity = 1607/1607 (100.00%), Postives = 1607/1607 (100.00%), Query Frame = 0
Query:    1 MQMVVCNQYHFPPPGAVLTADGGDKGSRRNGIKKRTSVGSLSGAFGGGSGDVRGAEGQIMAADTELAEEEAVLSKVLRGERRTGKKRKRLNVNRAGEGDVPDNKPLLSLIFLDLSMPPRTPPADVIERLKALNAEFGIGARLRRATEPDFVAAAIAGDGSRGVSRRMLMTTMEWLAPAVAAEPQVTLRRLPLECICHMYMIAHMKTSQKGHAQPRQHPLGQSGNERGERTPASAVRGALQTLLGPMRRIILDRLFEECEPTVAGAGERSSAVLSSEVEERASKALSVFTDELRAVETLRRAAARRALDELLVHSPERSKRVAEAGMVDAQGDAWVGTDLAVRMGEPGFVARASQVHCAWMFHLQDLPCFRSKPAATLRALYEALQVEASHHVISYYLLGLLFHCHGPAAASGDRFRIRRSKTKGRGYKLSGSFRSPSFFSFVASTVLISRKLVVQAAMEHTPFLRRVLVEEVTATLAESSCAQGDSLATPGEKCTTHDEETTTQSKHAKRVWQSCDLARLCLSCDDLSGPRNVLLPDTLLAACFSLMSMHKGSSIPPVLEQLLGLLFPSAVNAPDGRLLGASGASKVSDAAADVDGMERDEGERAALGPEEWIGLVKCESHVISAAAARCMPHVFLPTLIFCSGLSRDSFYAALSRIEELSKGAKKAETVYRELLWSSSEATRQGSRSLNMQPSLLRKLARHTTAYIQLHAPRNESERATCAGNFCSWLSHEVPSAVSARTLARNEPSDVPKRDDSLTRRRGGPSTFPSTRNRTTTNHMLLESVRGLTLDMEQEEALPEAAPSKERGDSGILTYSSSGIETPCKFPVVPADAEQSIVDFMLPFKMRKEEKDSRDGEGRSSLNKLINRALSAATEASRAELLHVLSQVACSLGSEFVTGPMGRWRWHSKYAHDGEEQLVEVSYIVQLLHRCIRSTAFSVGTGQEGEDSSIEEGGARLIAKLLCQVCLMHWLAVDEEGLGARCQGLIWDLLLSCRSTPYTGSCSNVRHALLSQVLETFSVDELEPLVQRIFKDSGKANLAGASGDGSVESPPFDVYVALSLLNRWFCRPGQSPMVTELGLSPGTRQGLAAAAAARTIPSTTSPLVSLSAQGLSDKSGHPFLVRDGATLSLSPGDLDTVLKLVCQGLALLNGLQGNMGAQRNHSSRDGPTQHLLLFHESIAALCIHLSDRHSTFRRVLMQQLLSLFKDKTTPSSCEAYIVYRLYMAFPADAAIRGRGEYRDTNLMVRALCEGAALQRRPCRSTMDQSLPDDVAHLCRLGLNAQRDSDVVYRLHELAHSHPYLILQTIPALTDILTVDASPDTDRPVVRAPFYFPRPPPVKDGSGHFEPSLPPTSSACGGNEIFLATFASKNEAAPASALQCPSGPLSSIAVELCLPRRVRATFWGLSFRPQLWRAVLDLVMEVPASCMAAYVSASSSGGLGRLEEIMALSSTYVRLLAAQERASQCPPEGASSPPQPPDKVKGKPKKHQLRKQPPGEQEPPLAAPLAFSALHQRPLETGVLNAVESDGCLFYMAERLLLLLRELEKHHPSPVVGFLQTPDPTLGREEKPFDVVRRRLEKIPHVPPGEQSHEQSRSSAPGPAVSVPQPRRV 1607
            MQMVVCNQYHFPPPGAVLTADGGDKGSRRNGIKKRTSVGSLSGAFGGGSGDVRGAEGQIMAADTELAEEEAVLSKVLRGERRTGKKRKRLNVNRAGEGDVPDNKPLLSLIFLDLSMPPRTPPADVIERLKALNAEFGIGARLRRATEPDFVAAAIAGDGSRGVSRRMLMTTMEWLAPAVAAEPQVTLRRLPLECICHMYMIAHMKTSQKGHAQPRQHPLGQSGNERGERTPASAVRGALQTLLGPMRRIILDRLFEECEPTVAGAGERSSAVLSSEVEERASKALSVFTDELRAVETLRRAAARRALDELLVHSPERSKRVAEAGMVDAQGDAWVGTDLAVRMGEPGFVARASQVHCAWMFHLQDLPCFRSKPAATLRALYEALQVEASHHVISYYLLGLLFHCHGPAAASGDRFRIRRSKTKGRGYKLSGSFRSPSFFSFVASTVLISRKLVVQAAMEHTPFLRRVLVEEVTATLAESSCAQGDSLATPGEKCTTHDEETTTQSKHAKRVWQSCDLARLCLSCDDLSGPRNVLLPDTLLAACFSLMSMHKGSSIPPVLEQLLGLLFPSAVNAPDGRLLGASGASKVSDAAADVDGMERDEGERAALGPEEWIGLVKCESHVISAAAARCMPHVFLPTLIFCSGLSRDSFYAALSRIEELSKGAKKAETVYRELLWSSSEATRQGSRSLNMQPSLLRKLARHTTAYIQLHAPRNESERATCAGNFCSWLSHEVPSAVSARTLARNEPSDVPKRDDSLTRRRGGPSTFPSTRNRTTTNHMLLESVRGLTLDMEQEEALPEAAPSKERGDSGILTYSSSGIETPCKFPVVPADAEQSIVDFMLPFKMRKEEKDSRDGEGRSSLNKLINRALSAATEASRAELLHVLSQVACSLGSEFVTGPMGRWRWHSKYAHDGEEQLVEVSYIVQLLHRCIRSTAFSVGTGQEGEDSSIEEGGARLIAKLLCQVCLMHWLAVDEEGLGARCQGLIWDLLLSCRSTPYTGSCSNVRHALLSQVLETFSVDELEPLVQRIFKDSGKANLAGASGDGSVESPPFDVYVALSLLNRWFCRPGQSPMVTELGLSPGTRQGLAAAAAARTIPSTTSPLVSLSAQGLSDKSGHPFLVRDGATLSLSPGDLDTVLKLVCQGLALLNGLQGNMGAQRNHSSRDGPTQHLLLFHESIAALCIHLSDRHSTFRRVLMQQLLSLFKDKTTPSSCEAYIVYRLYMAFPADAAIRGRGEYRDTNLMVRALCEGAALQRRPCRSTMDQSLPDDVAHLCRLGLNAQRDSDVVYRLHELAHSHPYLILQTIPALTDILTVDASPDTDRPVVRAPFYFPRPPPVKDGSGHFEPSLPPTSSACGGNEIFLATFASKNEAAPASALQCPSGPLSSIAVELCLPRRVRATFWGLSFRPQLWRAVLDLVMEVPASCMAAYVSASSSGGLGRLEEIMALSSTYVRLLAAQERASQCPPEGASSPPQPPDKVKGKPKKHQLRKQPPGEQEPPLAAPLAFSALHQRPLETGVLNAVESDGCLFYMAERLLLLLRELEKHHPSPVVGFLQTPDPTLGREEKPFDVVRRRLEKIPHVPPGEQSHEQSRSSAPGPAVSVPQPRRV
Sbjct:    1 MQMVVCNQYHFPPPGAVLTADGGDKGSRRNGIKKRTSVGSLSGAFGGGSGDVRGAEGQIMAADTELAEEEAVLSKVLRGERRTGKKRKRLNVNRAGEGDVPDNKPLLSLIFLDLSMPPRTPPADVIERLKALNAEFGIGARLRRATEPDFVAAAIAGDGSRGVSRRMLMTTMEWLAPAVAAEPQVTLRRLPLECICHMYMIAHMKTSQKGHAQPRQHPLGQSGNERGERTPASAVRGALQTLLGPMRRIILDRLFEECEPTVAGAGERSSAVLSSEVEERASKALSVFTDELRAVETLRRAAARRALDELLVHSPERSKRVAEAGMVDAQGDAWVGTDLAVRMGEPGFVARASQVHCAWMFHLQDLPCFRSKPAATLRALYEALQVEASHHVISYYLLGLLFHCHGPAAASGDRFRIRRSKTKGRGYKLSGSFRSPSFFSFVASTVLISRKLVVQAAMEHTPFLRRVLVEEVTATLAESSCAQGDSLATPGEKCTTHDEETTTQSKHAKRVWQSCDLARLCLSCDDLSGPRNVLLPDTLLAACFSLMSMHKGSSIPPVLEQLLGLLFPSAVNAPDGRLLGASGASKVSDAAADVDGMERDEGERAALGPEEWIGLVKCESHVISAAAARCMPHVFLPTLIFCSGLSRDSFYAALSRIEELSKGAKKAETVYRELLWSSSEATRQGSRSLNMQPSLLRKLARHTTAYIQLHAPRNESERATCAGNFCSWLSHEVPSAVSARTLARNEPSDVPKRDDSLTRRRGGPSTFPSTRNRTTTNHMLLESVRGLTLDMEQEEALPEAAPSKERGDSGILTYSSSGIETPCKFPVVPADAEQSIVDFMLPFKMRKEEKDSRDGEGRSSLNKLINRALSAATEASRAELLHVLSQVACSLGSEFVTGPMGRWRWHSKYAHDGEEQLVEVSYIVQLLHRCIRSTAFSVGTGQEGEDSSIEEGGARLIAKLLCQVCLMHWLAVDEEGLGARCQGLIWDLLLSCRSTPYTGSCSNVRHALLSQVLETFSVDELEPLVQRIFKDSGKANLAGASGDGSVESPPFDVYVALSLLNRWFCRPGQSPMVTELGLSPGTRQGLAAAAAARTIPSTTSPLVSLSAQGLSDKSGHPFLVRDGATLSLSPGDLDTVLKLVCQGLALLNGLQGNMGAQRNHSSRDGPTQHLLLFHESIAALCIHLSDRHSTFRRVLMQQLLSLFKDKTTPSSCEAYIVYRLYMAFPADAAIRGRGEYRDTNLMVRALCEGAALQRRPCRSTMDQSLPDDVAHLCRLGLNAQRDSDVVYRLHELAHSHPYLILQTIPALTDILTVDASPDTDRPVVRAPFYFPRPPPVKDGSGHFEPSLPPTSSACGGNEIFLATFASKNEAAPASALQCPSGPLSSIAVELCLPRRVRATFWGLSFRPQLWRAVLDLVMEVPASCMAAYVSASSSGGLGRLEEIMALSSTYVRLLAAQERASQCPPEGASSPPQPPDKVKGKPKKHQLRKQPPGEQEPPLAAPLAFSALHQRPLETGVLNAVESDGCLFYMAERLLLLLRELEKHHPSPVVGFLQTPDPTLGREEKPFDVVRRRLEKIPHVPPGEQSHEQSRSSAPGPAVSVPQPRRV 1607          
BLAST of EWM29311.1 vs. NCBI_GenBank
Match: gi|219121436|ref|XP_002185942.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582791|gb|ACI65412.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.4698 bits (158), Expect = 9.765e-7
Identity = 53/179 (29.61%), Postives = 84/179 (46.93%), Query Frame = 0
Query:  606 ALGPEEWIGLVKCESHVISAAAARCMPHVFLPTLIFCSGLSRDSFYAALSRIEELSKGAKKAETVYRELLWSSSEATRQGSRSLNMQPSLLRKLARHTTAYIQLHAPRNESERATCAGNFCSWLSHEVPSAVSARTLARNEPSDVPKRDDSLTRRRGGPS-TFPSTRNRTTTNHMLLES 783
            A+  E WI L K  S +I+  AA   P  FLP L+ CSGL + S    L+R+  L   A+ +  +YR LL  S+ +     R +  +  + RKL    +AYI+L+      +    +  F  WLS E   + +A    + +P ++   +  L  R G  S +      R+  NH+ +ES
Sbjct: 1423 AVKVESWILLAKSRSDLIARRAAMSAPDEFLPRLLLCSGLPKASLLTMLNRLGRLGDSAQNSVLLYRSLLTPSASSEWDIGR-VGRRRDISRKLLGRLSAYIRLNNIDLGLDPLKVSRTFLDWLSAEC--STNASKACKAKPKNLKTENPRLLSRVGERSPSLTEIGARSVGNHVEMES 1598          
The following BLAST results are available for this feature:
BLAST of EWM29311.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585111835|gb|EWM29311.1|0.000e+0100.00hypothetical protein Naga_100152g4 [Nannochloropsi... [more]
gi|219121436|ref|XP_002185942.1|9.765e-729.61predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1365rna1365Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications