EWM29324.1, cds1344 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|585111850|gb|EWM29324.1| (gdp-l-galactose phosphorylase [Nannochloropsis gaditana]) HSP 1 Score: 955.281 bits (2468), Expect = 0.000e+0 Identity = 466/466 (100.00%), Postives = 466/466 (100.00%), Query Frame = 0 Query: 1 MSFLLLPLLVVIVHFRPHDPMTVESVDWASFWPCLVDPPEGTLAEVYGARGSEQDRDVFVYQKPFNFIPPQPSPPLSVKEYLLGLAGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSACANA 466 MSFLLLPLLVVIVHFRPHDPMTVESVDWASFWPCLVDPPEGTLAEVYGARGSEQDRDVFVYQKPFNFIPPQPSPPLSVKEYLLGLAGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSACANA Sbjct: 1 MSFLLLPLLVVIVHFRPHDPMTVESVDWASFWPCLVDPPEGTLAEVYGARGSEQDRDVFVYQKPFNFIPPQPSPPLSVKEYLLGLAGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSACANA 466
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|569423433|gb|ETO29934.1| (hypothetical protein RFI_07185 [Reticulomyxa filosa]) HSP 1 Score: 115.161 bits (287), Expect = 7.430e-24 Identity = 69/248 (27.82%), Postives = 128/248 (51.61%), Query Frame = 0 Query: 218 AMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPF-ASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSACA 464 ++ C+P A D H +L+N +PIG+ SG+ P+ +++ PQ L + L + VGL F + L+ + + RVGFNS+GA AS+ H HFQFW++ GL +P+E P + +++ N +PIR+L+ + + HCV L++ +IP +L+++ Q +Y+ R T + GF + +G++ V+N+ + LL ++++ ++ V ++ + S C Sbjct: 325 SIQCDPFVFA----KTDTHLLLVNRFPIGNYSGLFTPYFWQKLPQVLTKEL--LHVGLQFNAMFLSQSHKG-----TFRVGFNSLGAMASVNHFHFQFWKIDTGL---LPVETLHKTPIPTANKQHLQIFTFNDNVYPIRTLIYPIVTGNRTLETLWHCVKFLIESDIPHNLMISRQFVYLFVRNEQQLTSNYPIFYGFSDVSGWITVLNEQMFDH--LLTFEMLYQDMQQRISVQPSKWDFVYSNCV 556
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|514695076|ref|XP_004995109.1| (hypothetical protein PTSG_04213 [Salpingoeca rosetta] >gi|326438035|gb|EGD83605.1| hypothetical protein PTSG_04213 [Salpingoeca rosetta]) HSP 1 Score: 102.064 bits (253), Expect = 4.761e-20 Identity = 101/370 (27.30%), Postives = 160/370 (43.24%), Query Frame = 0 Query: 102 LGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAK---AVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVE--LAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSACANA 466 L L+K +W K V + + T+ ++ ++ NP R HK V+ ++ A N+ +P+DPR F F + +F + + +A +E + D + R +HAVL+N P+ SG+LVPF E+R Q + + DA+ VGL FA+ L + + +RVGFNS+ AGAS+ HLHFQFW L PIE A + T VE + + G + AL A H L RN P++L++ +Y++PR+ + GFPE +G LV + D L A+ V W V +F+ ++ ++ Sbjct: 56 LEQLLKQQWTAKAADEHVMPNVPANLLTRTMHTEMGDVLFVH-NPERLHKRVTQQSRRQSAKVNLRRPFDPRDFHFGKVSLNEFLFV--------MTDDANAHDECTAFSD------------------IQAFHRPVHAVLVNKSPLSKYSGLLVPFLREQRNQVM--TADALLVGLGFANRL---------QGSGIRVGFNSLYAGASVNHLHFQFWWDTHAL----PIELAEMTTVTATDRLLVERDAGYLSSFLRFTYDRAAPGVVVEALMPALQH----LTRRNTPYNLVLVPGMVYLLPRQPMLKQLGSINVGFPEVSGTPLVPSHD---DFVALTAEDVVRHWTTHVRVPSTVFDELVDIIVDS 376
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|167535931|ref|XP_001749638.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163771786|gb|EDQ85447.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 95.1301 bits (235), Expect = 1.386e-17 Identity = 76/256 (29.69%), Postives = 124/256 (48.44%), Query Frame = 0 Query: 222 EPVDRATRGHARDLH--AVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAK--AAAHCVNVLMDRNIPFSLLMNGQH-----------LYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSA 462 E DR G DLH AVLINP+P+G LSG+LVP+ E RPQ + R DA+T G FA L ++ R+ FNS+ AGAS+ HLHFQFW+ D + +E A T +++ L ++P P+ +L + A +++L +PF+L+ + + +YI+ R+ + FP + GFPE +G L+ + + + + A + WR++ + + + L + Sbjct: 161 EVADRVRCGPVADLHQHAVLINPFPLGWLSGLLVPYLLEHRPQVMTR--DALTAGFAFAQRL---------QNPYTRLAFNSLEAGASVNHLHFQFWQ----FDAPLAVELA-TRQLYFRFGEELTLHILPDA--PVHTLAVEYFRTTATGAIVVVQRIIDLLYQHVLPFNLVFSRYYVNAGISPSRSTVYIVLRQRMH-PFPGINIGFPEVSGELICTSSSIYHS---VTAHNISQHWRDNVRLSGDRYTEFLGS 394
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|298715674|emb|CBJ28200.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.1301 bits (235), Expect = 3.116e-17 Identity = 76/248 (30.65%), Postives = 119/248 (47.98%), Query Frame = 0 Query: 237 AVLINPYPIGDLSGVLVP-FPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDG------------RVPIERAPTWPP-----SPTSFDDVELAVIPTNYHPIRSLVLS--GRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASA-GFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSAC 463 AVL+N P+G +S +L P + + A SL V + FA L R D R+GFNS G+ AS+ HLHFQ W G G VP+ R+ PP + D +E+ V+ +PIR+LV G+ + A +A CV+ L++ N P +++ + ++++PR+ PFA GFPE +G ++V + D + AD +++ WR+ V E F+ I C Sbjct: 322 AVLVNIRPVGPVSLLLTPGYAHSHNQRATAYSL---AVAIDFAEAL----RVD----PGFRLGFNSAGSSASVNHLHFQCWYFDAGPGGLAIESSKTRHLATVPLPRSSFSPPAEGENAADKEDSLEVHVL--QGYPIRALVFHTLGKDLEAAGEAIEKCVSFLVEENTPHTVVFSTGRVFVLPRQHLEEP-PFAVVPGFPEVSGEVIVTRED---DFHTITADQIYEWWRDKVAVDSEHFDRITDGC 552
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|971504946|dbj|GAQ93260.1| (GDP-L-galactose phosphorylases [Klebsormidium nitens]) HSP 1 Score: 93.9745 bits (232), Expect = 4.634e-17 Identity = 88/310 (28.39%), Postives = 136/310 (43.87%), Query Frame = 0 Query: 99 KLGLGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLS-GRSIPALAKAAAHCVNVLMDRNIPFSLLM--NGQHLYIMPRRFAN 405 K L L+ +W+ + + G FR VT + G + LN GR K + V + QP+D F+F +V+F + + DG + + A PV + + V+IN PI +LVP + PQ L +D++ + L FA E + LR+G+NS+GA A+I HLHFQ + L+ P+ERAPT SP + V +P+R+LV G S+P LA A L DRN PF++L+ +G +++ P+ +A Sbjct: 89 KSCLDQLLVAQWEDRAERGLFRYDVTACETKMLAGE---YGFIAQLNEGRHLKKRPTEFR-VDQVLQPFDAAKFNFTKVDPAEVLFRF------------------EQSEDGRSDYYEHA----PVSDSP-------NVVIINVSPIEYGHVLLVPRVLDCLPQRL--DVDSLLLALHFAHEA---------DNPYLRLGYNSLGAFATINHLHFQAYY----LNAPFPVERAPTVCFSPKKRKRA-VKVCELRQYPVRALVFEVGASLPELAAAVGRVCARLQDRNRPFNVLIADSGARVFVFPQCYAE 349
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|470429986|ref|XP_004338258.1| (carboxylesterase superfamily protein [Acanthamoeba castellanii str. Neff] >gi|440795108|gb|ELR16245.1| carboxylesterase superfamily protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 93.9745 bits (232), Expect = 1.033e-16 Identity = 94/340 (27.65%), Postives = 149/340 (43.82%), Query Frame = 0 Query: 130 SSQGTKSPWMVELYLNP--GRSHKPVSVPAKAVGNISQPY--DPRAFSFLGAPARDVMFWYRTPRARDLQV-NEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLSGRSIPALAKAAAHCVNVLMDRNIPFSLLMNGQHLYIMPRRFANTTFPFASAGFPEAAGFLLVVNDTYWRDPSLLNADIVWDLWRESFDVGEEMFNGILSACA 464 +S+ + P ++ L GR H+P++ P + + QP+ D AF+F A +V+F R++ ++HA ++ + G W++ +L VL+N +P VLV PQ L + +AI VGL A++ G LRVG+NS+ GAS+ HLHFQ W DG++P+E AP +S LA+ + +PIRSL+ S H +V P L Y++PRRFA AGFPE AG ++ V+ + + + + E+ + E F +L+AC Sbjct: 636 TSEDDQPPAIINFALQKVEGRRHRPIN-PVAELHEVVQPFTTDSGAFNFNNKDASEVLFTIDVVRSQPAHAESQHAHDQEQQKG------WTS----------------ELAGVLVNSHPFAYGCVVLVVRTDRMLPQVLTQ--EAIEVGLLLAAQSTEG----------LRVGYNSLAGGASVNHLHFQGWYFNATPDGQLPVESAPFALLRSSS----GLAISQSQGYPIRSLLFS-----------THAEDV-----SPGRLSAAVYSAYVIPRRFATPNVWDQRAGFPEVAGQIVTVS-----EEAFAGLESPYQF-LEALSLSREEFADVLAACC 914
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|1044529515|ref|XP_017409350.1| (PREDICTED: GDP-L-galactose phosphorylase 1 [Vigna angularis] >gi|920682008|gb|KOM28780.1| hypothetical protein LR48_Vigan583s003100 [Vigna angularis] >gi|965601433|dbj|BAT88611.1| hypothetical protein VIGAN_05215000 [Vigna angularis var. angularis]) HSP 1 Score: 86.6557 bits (213), Expect = 1.079e-14 Identity = 91/331 (27.49%), Postives = 142/331 (42.90%), Query Frame = 0 Query: 77 SVKEYLLGLAGVRERCEIFDPRKLGLGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLS-GRSIPALAKAAAHCVNVLMDRNIPFSLLMN--GQHLYIMPRRFA 404 V E L L G +E C + L LI W+++ + G FR VT + G + LN GR K + V + QP+D F+F +V+F + D E +S P+D V IN PI +L+P FE PQ + AS LLA + + R+G+NS+GA A+I HLHFQ + L PIE+APT + S D V+++ + NY P+R LV G ++ +LA A + L N+P+++L++ G+ ++++P+ +A Sbjct: 52 KVAEKELPLLGCKEHCSV-----AFLDSLILGEWEERMQRGLFRYDVTACETKIIPGE---YGFIAQLNEGRHLKKRPTEFR-VDKVLQPFDETKFNFTKVGQEEVLFQL-------------------EASDNGEAQFSPNA---PIDVENSP-----SFVAINVSPIEYGHVLLIPRIFECLPQ-----------RIDHASFLLALQMAVEAGNPYFRLGYNSLGAFATINHLHFQAYY----LAMPFPIEKAPTKKITKLS-DGVKVSKL-LNY-PVRGLVFEGGHTLESLANAVSEACICLQHNNVPYNVLISDCGRQIFLLPQCYA 328
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|970035516|ref|XP_015079092.1| (PREDICTED: GDP-L-galactose phosphorylase 2-like [Solanum pennellii]) HSP 1 Score: 85.8853 bits (211), Expect = 1.779e-14 Identity = 78/306 (25.49%), Postives = 132/306 (43.14%), Query Frame = 0 Query: 102 LGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLS-GRSIPALAKAAAHCVNVLMDRNIPFSLLM--NGQHLYIMPRRFA 404 L L+ W+ +Q+ G FR VT + G + LN GR K + V + QP+D F+F +++F + ++Q+ A P+D + V IN PI +L+P E PQ + R D+ + L A+E + R+G+NS+GA A+I HLHFQ + L + PIE+APT + T D + + +P+R LV G ++ LA + L + NIP+++L+ +G+ ++++P+ +A Sbjct: 71 LESLVLGEWEDRQQKGLFRYDVTACETKVIPGE---YGFVAQLNEGRHLKKRPTEFR-VDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDA----------------------PID-----PEKSPSVVAINVSPIEYGHVLLIPKVLECLPQRIDR--DSFLLALHMAAEA---------ANPYFRLGYNSLGAFATINHLHFQAYF----LAVQFPIEKAPTQKITVT---DAGVKISEMLNYPVRGLVFEGGNTLEDLADVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYA 327
BLAST of EWM29324.1 vs. NCBI_GenBank
Match: gi|1079495268|gb|AOW42607.1| (GDP-L-galactose phosphorylase [Solanum melongena]) HSP 1 Score: 85.5001 bits (210), Expect = 2.338e-14 Identity = 78/306 (25.49%), Postives = 133/306 (43.46%), Query Frame = 0 Query: 102 LGGLIKHRWDQKQKTGQFRTTVTGARIRSSQGTKSPWMVELYLNPGRSHKPVSVPAKAVGNISQPYDPRAFSFLGAPARDVMFWYRTPRARDLQVNEHASEEGSKGGDGAEESWSTAMSCEPVDRATRGHARDLHAVLINPYPIGDLSGVLVPFPFEERPQGLARSLDAITVGLTFASELLAGARRDDDRSTNLRVGFNSIGAGASIGHLHFQFWRVVGGLDGRVPIERAPTWPPSPTSFDDVELAVIPTNYHPIRSLVLS-GRSIPALAKAAAHCVNVLMDRNIPFSLLM--NGQHLYIMPRRFA 404 L L+ W+ +Q+ G FR VT + G + LN GR K + V + QP+D F+F +++F + ++Q+ A P+D + + V IN PI +L+P E PQ + R D+ + L A+E + R+G+NS+GA A+I HLHFQ + L + PIE+APT + T D + + +P+R LV G ++ LA + L + NIP+++L+ +G+ ++++P+ +A Sbjct: 71 LESLLLGEWEDRQQKGLFRYDVTACETKVIPGE---YGFIAQLNEGRHLKKRPTEFR-VDKVLQPFDGSKFNFTKVGQEELLFQFEASEEDEVQLYPDA----------------------PID-----PEKSPNVVAINVSPIEYGHVLLIPKVLECLPQRIDR--DSFLLALHMAAEA---------ANPYFRLGYNSLGAFATINHLHFQAYF----LAVQFPIEKAPTQKITVT---DAGVNISKMLNYPVRGLVFEGGNTLEDLANVVSDSCICLQENNIPYNVLISDSGKRIFLLPQCYA 327 The following BLAST results are available for this feature:
BLAST of EWM29324.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|