EWM29352.1, cds1327 (CDS) Nannochloropsis gaditana

Overview
NameEWM29352.1
Unique Namecds1327
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:359175..359246 +
Alignment locationCM002457.1:359432..360557 +
Alignment locationCM002457.1:360697..361487 +
Alignment locationCM002457.1:361573..361833 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29352.1
Producttpa: zn 2cys6 transcription factor
Orig transcript idgnl|cribi|Naga_100028g52.3288.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:359175..359246 +
CM002457.1supercontigCM002457.1:359432..360557 +
CM002457.1supercontigCM002457.1:360697..361487 +
CM002457.1supercontigCM002457.1:361573..361833 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003700DNA-binding transcription factor activity
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
Homology
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|585111880|gb|EWM29352.1| (zn 2cys6 transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 1536.16 bits (3976), Expect = 0.000e+0
Identity = 749/749 (100.00%), Postives = 749/749 (100.00%), Query Frame = 0
Query:    1 MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEEEGRWVARGARGGPPKMHVQPPRLSSERKQSSRRAHELFEKAQVHHDAVTSSGELSAEVINHLFLEDSALLVNGKLSSRLCGAERLP 749
            MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEEEGRWVARGARGGPPKMHVQPPRLSSERKQSSRRAHELFEKAQVHHDAVTSSGELSAEVINHLFLEDSALLVNGKLSSRLCGAERLP
Sbjct:    1 MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEEEGRWVARGARGGPPKMHVQPPRLSSERKQSSRRAHELFEKAQVHHDAVTSSGELSAEVINHLFLEDSALLVNGKLSSRLCGAERLP 749          
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|553184606|ref|XP_005854119.1| (zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526] >gi|422294940|gb|EKU22240.1| zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1343.95 bits (3477), Expect = 0.000e+0
Identity = 655/663 (98.79%), Postives = 656/663 (98.94%), Query Frame = 0
Query:    1 MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEE 663
            MI PTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDIS NSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPH MKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFP LQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLS VRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALG SLSCELEAILLYLRVGHDPSLRILEAQWQEVCAV+MSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLP SRIQDGISQQEESLRNEE
Sbjct:    1 MISPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISTNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHPMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPKLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSQVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGPSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVDMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPPSRIQDGISQQEESLRNEE 663          
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|585103226|gb|EWM22661.1| (c6 transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 67.781 bits (164), Expect = 5.036e-8
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0
Query:   10 KKLRRSCDRCTSKKIRCDGLA-ACQNCVRRGYACHYSERRRTGPKIRTA 57
            K+ R+SCD CT+ KIRCDG    C+NC +R  ACHYSE++R GPK+  A
Sbjct:  394 KRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNA 442          
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|298710930|emb|CBJ32241.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 63.5438 bits (153), Expect = 7.678e-8
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0
Query:    4 PTDRSRKK--------LRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPK 53
            P   SRKK        LR++CDRCTSKK+RCDG   C  C R G  CH+S  RR+GP+
Sbjct:   62 PRRPSRKKTKKPVWSQLRKACDRCTSKKVRCDGKEGCFQCSRVGATCHFSICRRSGPR 119          
The following BLAST results are available for this feature:
BLAST of EWM29352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585111880|gb|EWM29352.1|0.000e+0100.00zn 2cys6 transcription factor [Nannochloropsis gad... [more]
gi|553184606|ref|XP_005854119.1|0.000e+098.79zn 2cys6 transcription factor [Nannochloropsis gad... [more]
gi|585103226|gb|EWM22661.1|5.036e-857.14c6 transcription factor [Nannochloropsis gaditana][more]
gi|298710930|emb|CBJ32241.1|7.678e-851.72conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1329rna1329Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications