EWM29352.1, cds1327 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|585111880|gb|EWM29352.1| (zn 2cys6 transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 1536.16 bits (3976), Expect = 0.000e+0 Identity = 749/749 (100.00%), Postives = 749/749 (100.00%), Query Frame = 0
Query: 1 MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEEEGRWVARGARGGPPKMHVQPPRLSSERKQSSRRAHELFEKAQVHHDAVTSSGELSAEVINHLFLEDSALLVNGKLSSRLCGAERLP 749
MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEEEGRWVARGARGGPPKMHVQPPRLSSERKQSSRRAHELFEKAQVHHDAVTSSGELSAEVINHLFLEDSALLVNGKLSSRLCGAERLP
Sbjct: 1 MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEEEGRWVARGARGGPPKMHVQPPRLSSERKQSSRRAHELFEKAQVHHDAVTSSGELSAEVINHLFLEDSALLVNGKLSSRLCGAERLP 749
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|553184606|ref|XP_005854119.1| (zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526] >gi|422294940|gb|EKU22240.1| zn 2cys6 transcription factor [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 1343.95 bits (3477), Expect = 0.000e+0 Identity = 655/663 (98.79%), Postives = 656/663 (98.94%), Query Frame = 0
Query: 1 MILPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISPNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHSMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPMLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSHVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGSSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVNMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPSSRIQDGISQQEESLRNEE 663
MI PTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDIS NSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPH MKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFP LQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLS VRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALG SLSCELEAILLYLRVGHDPSLRILEAQWQEVCAV+MSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLP SRIQDGISQQEESLRNEE
Sbjct: 1 MISPTDRSRKKLRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPKIRTAADDHPELQGLSSADGLIPWSNDRPSSASGSERASRSASTAIDDGQVNPKLDDISTNSCTRSLGSAPSYPGSLGTLEKSSVSHIEDTFAGIRLPHPMKDPRLQGSVSPSWPLPSLSSAYSDDGVKTFPGSPMELREQILLTNEGQHFPKLQPLAFDSSLQSESTDDSALDSFVGATEEHFLRIFLAEVNAFLPMVDEGLMLGRLSQVRTYGRRALPPVTPAPLLPSMPPEIAGNVCAAQLENIYNATVWAGIAVGALLLNLTESVERYTGLAWSSMKECFDALHPATVSANLAMALVYMMHGDFLRYRRYISMAESIAVALGPSLSCELEAILLYLRVGHDPSLRILEAQWQEVCAVDMSSKSAHIQMIYLLARTKLQLLRNQLRGELQGIPRPFRPDQVAPALEHADRLLYLSPAASSAGALCYIRGLRGIVLFAGTRGKAVKLVLEMMQPLLEEAVRCPGVVRIFPNFHHFHAMAVFSYLGGDKEIYESARRFTAIAYGDCAPVPPWGISLDNLCNHRICDTVLKITAEERQRLQTTQHGRFRGARDDLPRNDETSSIDTSSSDYPGSSLSGQQEEEMERLSPLLPPSRIQDGISQQEESLRNEE 663
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|585103226|gb|EWM22661.1| (c6 transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 67.781 bits (164), Expect = 5.036e-8 Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0
Query: 10 KKLRRSCDRCTSKKIRCDGLA-ACQNCVRRGYACHYSERRRTGPKIRTA 57
K+ R+SCD CT+ KIRCDG C+NC +R ACHYSE++R GPK+ A
Sbjct: 394 KRFRKSCDFCTATKIRCDGRKPTCENCDKRLVACHYSEKKRPGPKLSNA 442
BLAST of EWM29352.1 vs. NCBI_GenBank
Match: gi|298710930|emb|CBJ32241.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 63.5438 bits (153), Expect = 7.678e-8 Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 0
Query: 4 PTDRSRKK--------LRRSCDRCTSKKIRCDGLAACQNCVRRGYACHYSERRRTGPK 53
P SRKK LR++CDRCTSKK+RCDG C C R G CH+S RR+GP+
Sbjct: 62 PRRPSRKKTKKPVWSQLRKACDRCTSKKVRCDGKEGCFQCSRVGATCHFSICRRSGPR 119 The following BLAST results are available for this feature:
BLAST of EWM29352.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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