EWM29349.1, cds1286 (CDS) Nannochloropsis gaditana

Overview
NameEWM29349.1
Unique Namecds1286
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:244574..245362 -
Alignment locationCM002457.1:244072..244392 -
Alignment locationCM002457.1:244008..244025 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29349.1
Productconserved unknown protein
Orig transcript idgnl|cribi|Naga_100028g1.3285.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:244574..245362 -
CM002457.1supercontigCM002457.1:244072..244392 -
CM002457.1supercontigCM002457.1:244008..244025 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|585111877|gb|EWM29349.1| (conserved unknown protein [Nannochloropsis gaditana])

HSP 1 Score: 764.607 bits (1973), Expect = 0.000e+0
Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0
Query:    1 MGGACENRLERGLASLEASITLFITLSPAREQPIRLHLTGPVSCLREGPQGCVYVPGYFGHSGATRCSSPHSVASRHELQQPIMSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFLTGSTA 375
            MGGACENRLERGLASLEASITLFITLSPAREQPIRLHLTGPVSCLREGPQGCVYVPGYFGHSGATRCSSPHSVASRHELQQPIMSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFLTGSTA
Sbjct:    1 MGGACENRLERGLASLEASITLFITLSPAREQPIRLHLTGPVSCLREGPQGCVYVPGYFGHSGATRCSSPHSVASRHELQQPIMSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFLTGSTA 375          
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|298705132|emb|CBJ28575.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 166.007 bits (419), Expect = 1.280e-43
Identity = 80/193 (41.45%), Postives = 120/193 (62.18%), Query Frame = 0
Query:  194 QQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVL-------------------RVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASS 367
            ++V+ICT+RWCM++G+ AT+GSF+GL P G +V VQGV+CLGRCN+GPN+R+ +  G + E + +++V++VY +    LG  +++ +A CLK NF  NA L++NEV  AI+ YDKAI   +  Q+GVL                    VMR+TA++QRAY+H     EL+++     P Q  L  L     +S
Sbjct:  191 KRVYICTNRWCMEKGSAATLGSFVGLAPEG-EVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREGSWCGTVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHELWEAS 382          
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|1210524915|dbj|GAX16107.1| (hypothetical protein FisN_3Hh413 [Fistulifera solaris])

HSP 1 Score: 110.923 bits (276), Expect = 6.378e-24
Identity = 63/196 (32.14%), Postives = 103/196 (52.55%), Query Frame = 0
Query:  166 PGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTP---------YGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLP 352
            P +S  RG + +    A++    + V    V++  S+  +++ A   + +F+ L P         + SK +   + C+            + N TFE +S VDSVDKVY + T  + ++++    DCLK  ++GN HL+  ++D AI+ YDKAI      QEG++ +MRSTAYLQRA TH    +E+V +    +P
Sbjct:   31 PWSSLKRGNTLSLFRQATAD---NTVVEWNVYVDQSKASLEKRANTALDAFLALAPSSVEVTPAVFKSKAKGGMIRCISS----------KKNKTFE-VSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETGVTQQEGIVLLMRSTAYLQRAITHRTTLKEIVNELIGMVP 212          
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|1210531115|dbj|GAX10216.1| (hypothetical protein FisN_3Lh413 [Fistulifera solaris])

HSP 1 Score: 106.301 bits (264), Expect = 3.216e-22
Identity = 56/174 (32.18%), Postives = 93/174 (53.45%), Query Frame = 0
Query:  188 GDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTP---------YGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLP 352
             + V    V++  S+  +++ A   + +F+ L P         + SK +   + C+            + N +FE +S VDSVDKVY + T  + ++++    DCLK  ++GN HL+  ++D AI+ YDKAI      QEG++ +MRSTAYLQRA +H    +E+V +    +P
Sbjct:   50 DNDVVEWNVYVDQSKASLEKRANTALDAFLALAPSSVAVTPAVFKSKAKGGMIRCISS----------KKNKSFE-VSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETEVGQQEGIVLLMRSTAYLQRAISHRTTLKEIVNELIGMVP 212          
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|224008999|ref|XP_002293458.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970858|gb|EED89194.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 75.8702 bits (185), Expect = 8.294e-12
Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = 0
Query:  213 MGSFIGLTPYGSKVRVQGVDCLGRCN---RGPNLRLLR----SNGTFE-------ELSYVDSVDKVYDVFTSQLGI-RINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLS--HRGQE-------GVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFL 370
            M +FI L+P    VRV   +   +     +G  +R +R     +G  +       E+  VDS++KVY + T  + +  INQ + +CLK  FQGN  LD+++  +AI  Y++A+  +  H  ++       G + + R+TAYL+RA  H    R LV      +P  + +  L  T ++ P L
Sbjct:    1 MEAFISLSPTSENVRVYPANWSKQSKSKGKGHTVRCIRRRRSESGAADGEVVSALEVGNVDSIEKVYRIITEHMKMGEINQKACECLKCYFQGNERLDEDQPTQAITLYNQALTTARDHNNKQTTPKLPLGTILMKRATAYLRRAANHRKLLRILVRDLTDTVPSASTIKILYQTSSTHPAL 182          
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|971519026|dbj|GAQ79129.1| (stress-induced-phosphoprotein 1 [Klebsormidium nitens])

HSP 1 Score: 73.1738 bits (178), Expect = 5.321e-11
Identity = 55/174 (31.61%), Postives = 82/174 (47.13%), Query Frame = 0
Query:  189 DPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQA 362
            D V   ++ ICT+R C + G+  T+  F  L P G K+   G  C+G+C  GPNL +L S      +S+ ++   V  +   Q G    +++   L L +QGN+  +     RA E Y +AI L   G   +L   RS A +  A  +F    E  + AA+  PD A     QA
Sbjct:   62 DEVNNTEILICTNRTCRKDGSLQTVQYFRDLAPPGVKIDTTG--CIGKCGNGPNLVMLPSELI---ISHCNTASHVARLLALQCGAPDPETNLKALNLKYQGNSAFEGGNPQRAEELYTEAIGLRPSGGLHLLYANRSAARV--ALGNFQGSLEDAQSAAKEAPDWAGAVMRQA 228          
The following BLAST results are available for this feature:
BLAST of EWM29349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585111877|gb|EWM29349.1|0.000e+0100.00conserved unknown protein [Nannochloropsis gaditan... [more]
gi|298705132|emb|CBJ28575.1|1.280e-4341.45conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210524915|dbj|GAX16107.1|6.378e-2432.14hypothetical protein FisN_3Hh413 [Fistulifera sola... [more]
gi|1210531115|dbj|GAX10216.1|3.216e-2232.18hypothetical protein FisN_3Lh413 [Fistulifera sola... [more]
gi|224008999|ref|XP_002293458.1|8.294e-1229.67predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|971519026|dbj|GAQ79129.1|5.321e-1131.61stress-induced-phosphoprotein 1 [Klebsormidium nit... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1288rna1288Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications