EWM29349.1, cds1286 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|585111877|gb|EWM29349.1| (conserved unknown protein [Nannochloropsis gaditana]) HSP 1 Score: 764.607 bits (1973), Expect = 0.000e+0 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 0 Query: 1 MGGACENRLERGLASLEASITLFITLSPAREQPIRLHLTGPVSCLREGPQGCVYVPGYFGHSGATRCSSPHSVASRHELQQPIMSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFLTGSTA 375 MGGACENRLERGLASLEASITLFITLSPAREQPIRLHLTGPVSCLREGPQGCVYVPGYFGHSGATRCSSPHSVASRHELQQPIMSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFLTGSTA Sbjct: 1 MGGACENRLERGLASLEASITLFITLSPAREQPIRLHLTGPVSCLREGPQGCVYVPGYFGHSGATRCSSPHSVASRHELQQPIMSPMRSSPRSFPYPARKASFVVSVLWLLLHLSLVAHGFSPGSVIRGPRASPGCPSASSPPPPGRALRRVRGNIYVEVSSTAYPGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFLTGSTA 375
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|298705132|emb|CBJ28575.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 166.007 bits (419), Expect = 1.280e-43 Identity = 80/193 (41.45%), Postives = 120/193 (62.18%), Query Frame = 0 Query: 194 QQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVL-------------------RVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASS 367 ++V+ICT+RWCM++G+ AT+GSF+GL P G +V VQGV+CLGRCN+GPN+R+ + G + E + +++V++VY + LG +++ +A CLK NF NA L++NEV AI+ YDKAI + Q+GVL VMR+TA++QRAY+H EL+++ P Q L L +S Sbjct: 191 KRVYICTNRWCMEKGSAATLGSFVGLAPEG-EVLVQGVNCLGRCNKGPNVRVRQETGNWLEFNRIENVERVYKILRDYLGADVSKEAALCLKYNFLANAALNRNEVTLAIDYYDKAIDTGYADQQGVLLVRTSCGREGSWCGTVVDDEVMRATAFIQRAYSHGRALTELLQKVVVDRPTQTTLDVLHELWEAS 382
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|1210524915|dbj|GAX16107.1| (hypothetical protein FisN_3Hh413 [Fistulifera solaris]) HSP 1 Score: 110.923 bits (276), Expect = 6.378e-24 Identity = 63/196 (32.14%), Postives = 103/196 (52.55%), Query Frame = 0 Query: 166 PGTSGTRGGSSTPPLPASSGVRGDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTP---------YGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLP 352 P +S RG + + A++ + V V++ S+ +++ A + +F+ L P + SK + + C+ + N TFE +S VDSVDKVY + T + ++++ DCLK ++GN HL+ ++D AI+ YDKAI QEG++ +MRSTAYLQRA TH +E+V + +P Sbjct: 31 PWSSLKRGNTLSLFRQATAD---NTVVEWNVYVDQSKASLEKRANTALDAFLALAPSSVEVTPAVFKSKAKGGMIRCISS----------KKNKTFE-VSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETGVTQQEGIVLLMRSTAYLQRAITHRTTLKEIVNELIGMVP 212
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|1210531115|dbj|GAX10216.1| (hypothetical protein FisN_3Lh413 [Fistulifera solaris]) HSP 1 Score: 106.301 bits (264), Expect = 3.216e-22 Identity = 56/174 (32.18%), Postives = 93/174 (53.45%), Query Frame = 0 Query: 188 GDPVTVQQVFICTSRWCMQRGAGATMGSFIGLTP---------YGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLP 352 + V V++ S+ +++ A + +F+ L P + SK + + C+ + N +FE +S VDSVDKVY + T + ++++ DCLK ++GN HL+ ++D AI+ YDKAI QEG++ +MRSTAYLQRA +H +E+V + +P Sbjct: 50 DNDVVEWNVYVDQSKASLEKRANTALDAFLALAPSSVAVTPAVFKSKAKGGMIRCISS----------KKNKSFE-VSNVDSVDKVYRILTKHMELKVSTKVCDCLKWKYKGNGHLEAGQIDLAIDAYDKAIETEVGQQEGIVLLMRSTAYLQRAISHRTTLKEIVNELIGMVP 212
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|224008999|ref|XP_002293458.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220970858|gb|EED89194.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 75.8702 bits (185), Expect = 8.294e-12 Identity = 54/182 (29.67%), Postives = 90/182 (49.45%), Query Frame = 0 Query: 213 MGSFIGLTPYGSKVRVQGVDCLGRCN---RGPNLRLLR----SNGTFE-------ELSYVDSVDKVYDVFTSQLGI-RINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLS--HRGQE-------GVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQATHASSPFL 370 M +FI L+P VRV + + +G +R +R +G + E+ VDS++KVY + T + + INQ + +CLK FQGN LD+++ +AI Y++A+ + H ++ G + + R+TAYL+RA H R LV +P + + L T ++ P L Sbjct: 1 MEAFISLSPTSENVRVYPANWSKQSKSKGKGHTVRCIRRRRSESGAADGEVVSALEVGNVDSIEKVYRIITEHMKMGEINQKACECLKCYFQGNERLDEDQPTQAITLYNQALTTARDHNNKQTTPKLPLGTILMKRATAYLRRAANHRKLLRILVRDLTDTVPSASTIKILYQTSSTHPAL 182
BLAST of EWM29349.1 vs. NCBI_GenBank
Match: gi|971519026|dbj|GAQ79129.1| (stress-induced-phosphoprotein 1 [Klebsormidium nitens]) HSP 1 Score: 73.1738 bits (178), Expect = 5.321e-11 Identity = 55/174 (31.61%), Postives = 82/174 (47.13%), Query Frame = 0 Query: 189 DPVTVQQVFICTSRWCMQRGAGATMGSFIGLTPYGSKVRVQGVDCLGRCNRGPNLRLLRSNGTFEELSYVDSVDKVYDVFTSQLGIRINQSSADCLKLNFQGNAHLDKNEVDRAIECYDKAIPLSHRGQEGVLRVMRSTAYLQRAYTHFMQFRELVEQAAQPLPDQAFLAFLQA 362 D V ++ ICT+R C + G+ T+ F L P G K+ G C+G+C GPNL +L S +S+ ++ V + Q G +++ L L +QGN+ + RA E Y +AI L G +L RS A + A +F E + AA+ PD A QA Sbjct: 62 DEVNNTEILICTNRTCRKDGSLQTVQYFRDLAPPGVKIDTTG--CIGKCGNGPNLVMLPSELI---ISHCNTASHVARLLALQCGAPDPETNLKALNLKYQGNSAFEGGNPQRAEELYTEAIGLRPSGGLHLLYANRSAARV--ALGNFQGSLEDAQSAAKEAPDWAGAVMRQA 228 The following BLAST results are available for this feature:
BLAST of EWM29349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|