EWM29405.1, cds1264 (CDS) Nannochloropsis gaditana

Overview
NameEWM29405.1
Unique Namecds1264
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:185301..185525 +
Alignment locationCM002457.1:185838..187787 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29405.1
ProductSANT/Myb domain protein
Orig transcript idgnl|cribi|Naga_100042g29.5652.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:185301..185525 +
CM002457.1supercontigCM002457.1:185838..187787 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR006447Myb_dom_plants
IPR009057Homeodomain-like
IPR001005SANT/Myb
Homology
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|585111934|gb|EWM29405.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 1478.77 bits (3827), Expect = 0.000e+0
Identity = 724/724 (100.00%), Postives = 724/724 (100.00%), Query Frame = 0
Query:    1 MRPLNGMIDSPSLSLCNTRSVENDTNSWQTSFCWVSRKLVTDSSRNRVVHVAQGRVFGCQTFLQLSSIMPSRTKKIVEGNKLRKVPCVSGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPLSQAPGTQERLLEASSLMPGSVGAVNTYAAMCEDGGEAFYSAFSSGSSSGGATSSSACSSVTSSSAPHSPVVSGGEGEKGDGEEPRQSGSEFQDLEGFHHDHEYRQVEGEENPLDVDLACLFFNDEGHFHPDKAMEHSTLLLDPHPHLTLERQPQPPSQNLNYHGPQEPLESGMDQVMSSQPAIRQPSSHQQQQQQLLPEGKVLQGLPHQQLAPPQSACTPRLLPPLLSTVGSSSSITASLGGRPKQHQQQLQQLYLQQQQQQHSQLKQEQPGQHVPEQAGNRDLHVRQQQQQEVQGYECQGRAQPPGDAREDRGLGIPGHHLNSSREHELLQPEPPVLDDFTQLNNAWLSHEGGAEACEDGKIMTHLKKGGGALLVGTAAASGGLSQGENPTSLSFMGQPQNAFQGGSVPCMGMLEPGPHDEDFLSRFMWEGEDTALTAVV 724
            MRPLNGMIDSPSLSLCNTRSVENDTNSWQTSFCWVSRKLVTDSSRNRVVHVAQGRVFGCQTFLQLSSIMPSRTKKIVEGNKLRKVPCVSGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPLSQAPGTQERLLEASSLMPGSVGAVNTYAAMCEDGGEAFYSAFSSGSSSGGATSSSACSSVTSSSAPHSPVVSGGEGEKGDGEEPRQSGSEFQDLEGFHHDHEYRQVEGEENPLDVDLACLFFNDEGHFHPDKAMEHSTLLLDPHPHLTLERQPQPPSQNLNYHGPQEPLESGMDQVMSSQPAIRQPSSHQQQQQQLLPEGKVLQGLPHQQLAPPQSACTPRLLPPLLSTVGSSSSITASLGGRPKQHQQQLQQLYLQQQQQQHSQLKQEQPGQHVPEQAGNRDLHVRQQQQQEVQGYECQGRAQPPGDAREDRGLGIPGHHLNSSREHELLQPEPPVLDDFTQLNNAWLSHEGGAEACEDGKIMTHLKKGGGALLVGTAAASGGLSQGENPTSLSFMGQPQNAFQGGSVPCMGMLEPGPHDEDFLSRFMWEGEDTALTAVV
Sbjct:    1 MRPLNGMIDSPSLSLCNTRSVENDTNSWQTSFCWVSRKLVTDSSRNRVVHVAQGRVFGCQTFLQLSSIMPSRTKKIVEGNKLRKVPCVSGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPLSQAPGTQERLLEASSLMPGSVGAVNTYAAMCEDGGEAFYSAFSSGSSSGGATSSSACSSVTSSSAPHSPVVSGGEGEKGDGEEPRQSGSEFQDLEGFHHDHEYRQVEGEENPLDVDLACLFFNDEGHFHPDKAMEHSTLLLDPHPHLTLERQPQPPSQNLNYHGPQEPLESGMDQVMSSQPAIRQPSSHQQQQQQLLPEGKVLQGLPHQQLAPPQSACTPRLLPPLLSTVGSSSSITASLGGRPKQHQQQLQQLYLQQQQQQHSQLKQEQPGQHVPEQAGNRDLHVRQQQQQEVQGYECQGRAQPPGDAREDRGLGIPGHHLNSSREHELLQPEPPVLDDFTQLNNAWLSHEGGAEACEDGKIMTHLKKGGGALLVGTAAASGGLSQGENPTSLSFMGQPQNAFQGGSVPCMGMLEPGPHDEDFLSRFMWEGEDTALTAVV 724          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|585108828|gb|EWM26740.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 103.99 bits (258), Expect = 3.517e-20
Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 0
Query:  168 LLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPL 283
            +LFL+GL+++GKSWKKIS+IV TRTVVQIRTHAQKYLIK+EKA+K G  G +MM+GK + ++   + G   +  L   T   VSF S+  + + +     ++R K+ P A   GP+
Sbjct:    1 MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTE--RRGTSKKSSLSTET---VSFTSTSESSVLE-----QKRQKNEPAAHLPGPV 106          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana])

HSP 1 Score: 103.219 bits (256), Expect = 2.954e-19
Identity = 67/169 (39.64%), Postives = 90/169 (53.25%), Query Frame = 0
Query:   98 GNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASL---SPMSPAAAPDIPST----------------------SPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKK-------LGLTGTVMMNGKAITSSTKGKG 234
            G +S+  GS+S  P++ V   S N   SV  + L      S A AP   ST                      S  ++   + R++ GRW  EEH+LFLKGLE++GK WKKI++++KTRTVVQIRTHAQKY  K+ KAKK       LG+ GT    GK +  + K +G
Sbjct:   14 GTSSAPCGSNSASPMMPVVTASQNAAESVAGSMLPVSCVASAAIAPQTSSTTVGVAASAPAASPTTSKLHKGTSSMTQLGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGT-RFGGKRVKFTGKRRG 181          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 2.442e-17
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0
Query:  154 SPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK 224
            +P+++ GRW  +EH LFL+GLE++GK WKKI+ ++KTRTVVQIRTHAQKY  KI KAK+ G  G V M+ K
Sbjct:    2 TPKNT-GRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSK 71          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 96.2857 bits (238), Expect = 3.826e-17
Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 0
Query:   89 SGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNA-SLSPMSP--AAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK 224
            SG  GN S+  T+  + + +P     +S++S   ++SV  A S++  S   +  P   +T+  S    S  ++ GRW  EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KA++ G  G V M G+
Sbjct:   44 SGRDGNSSNSETNKSNSNRTPTKFPALSEVSHRRSASVSTAHSVTSKSKQNSTPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGR 182          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 95.5153 bits (236), Expect = 5.338e-17
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0
Query:  154 SPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK----AITSSTKGKGGAGGQK 240
            +P ++ GRW  EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KA++ G  G + M G+    +ITS+T        ++
Sbjct:   93 APGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKR 183          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris])

HSP 1 Score: 95.1301 bits (235), Expect = 7.236e-17
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0
Query:  154 SPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK----AITSSTKGKGGAGGQK 240
            +P ++ GRW  EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KA++ G  G + M G+    +ITS+T        ++
Sbjct:   94 APGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKR 184          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012])

HSP 1 Score: 92.4337 bits (228), Expect = 1.597e-16
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0
Query:  134 MSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGT----VMMNGKAITSSTKGKGGAGGQK 240
             +P      PS +P   ++  P   PGRW ++EHL FL+GL +YG+ W KI ++V TR+  Q+R+HAQKY  +I +AK+ G  G      MM+GK +  S + K G+GG+K
Sbjct:   46 FAPCTLDLTPSWAPAPNKEGGPSPLPGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGESDFQFMMDGKRMFKSAQ-KRGSGGRK 155          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|219128116|ref|XP_002184267.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404498|gb|EEC44445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 95.5153 bits (236), Expect = 1.787e-16
Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 0
Query:   89 SGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIP----STSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK 224
            SG  GN S+  T+  + + +P     +S++ P+  S++ + + S  S +     P    +T+  S    S  ++ GRW  EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KA++ G  G V M G+
Sbjct:   44 SGRDGNSSNSETNKSNSNRTPTKFAALSEV-PHRRSALVSTAHSVTSKSKQNSTPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGR 182          
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 80.1073 bits (196), Expect = 3.597e-15
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0
Query:  161 RWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLG 214
            RW  EEH LFL+GLE++GK WKKI+ ++K+RTVVQIRTHAQKY  K+ KAK+ G
Sbjct:    1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54          
The following BLAST results are available for this feature:
BLAST of EWM29405.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111934|gb|EWM29405.1|0.000e+0100.00SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585108828|gb|EWM26740.1|3.517e-2047.41SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|585113115|gb|EWM30452.1|2.954e-1939.64SANT/Myb domain protein [Nannochloropsis gaditana][more]
gi|298714408|emb|CBJ27465.1|2.442e-1760.56conserved unknown protein [Ectocarpus siliculosus][more]
gi|219128113|ref|XP_002184266.1|3.826e-1741.73predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516787|dbj|GAX24276.1|5.338e-1748.35protein MYSM1 [Fistulifera solaris][more]
gi|1210512502|dbj|GAX28359.1|7.236e-1748.35protein MYSM1 [Fistulifera solaris][more]
gi|432998484|gb|AGB13670.1|1.597e-1641.44MYB360 [Nannochloropsis sp. YJH-2012][more]
gi|219128116|ref|XP_002184267.1|1.787e-1640.00predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1072235817|gb|OEU20545.1|3.597e-1566.67hypothetical protein FRACYDRAFT_165241, partial [F... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1266rna1266Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications