EWM29405.1, cds1264 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|585111934|gb|EWM29405.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 1478.77 bits (3827), Expect = 0.000e+0 Identity = 724/724 (100.00%), Postives = 724/724 (100.00%), Query Frame = 0
Query: 1 MRPLNGMIDSPSLSLCNTRSVENDTNSWQTSFCWVSRKLVTDSSRNRVVHVAQGRVFGCQTFLQLSSIMPSRTKKIVEGNKLRKVPCVSGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPLSQAPGTQERLLEASSLMPGSVGAVNTYAAMCEDGGEAFYSAFSSGSSSGGATSSSACSSVTSSSAPHSPVVSGGEGEKGDGEEPRQSGSEFQDLEGFHHDHEYRQVEGEENPLDVDLACLFFNDEGHFHPDKAMEHSTLLLDPHPHLTLERQPQPPSQNLNYHGPQEPLESGMDQVMSSQPAIRQPSSHQQQQQQLLPEGKVLQGLPHQQLAPPQSACTPRLLPPLLSTVGSSSSITASLGGRPKQHQQQLQQLYLQQQQQQHSQLKQEQPGQHVPEQAGNRDLHVRQQQQQEVQGYECQGRAQPPGDAREDRGLGIPGHHLNSSREHELLQPEPPVLDDFTQLNNAWLSHEGGAEACEDGKIMTHLKKGGGALLVGTAAASGGLSQGENPTSLSFMGQPQNAFQGGSVPCMGMLEPGPHDEDFLSRFMWEGEDTALTAVV 724
MRPLNGMIDSPSLSLCNTRSVENDTNSWQTSFCWVSRKLVTDSSRNRVVHVAQGRVFGCQTFLQLSSIMPSRTKKIVEGNKLRKVPCVSGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPLSQAPGTQERLLEASSLMPGSVGAVNTYAAMCEDGGEAFYSAFSSGSSSGGATSSSACSSVTSSSAPHSPVVSGGEGEKGDGEEPRQSGSEFQDLEGFHHDHEYRQVEGEENPLDVDLACLFFNDEGHFHPDKAMEHSTLLLDPHPHLTLERQPQPPSQNLNYHGPQEPLESGMDQVMSSQPAIRQPSSHQQQQQQLLPEGKVLQGLPHQQLAPPQSACTPRLLPPLLSTVGSSSSITASLGGRPKQHQQQLQQLYLQQQQQQHSQLKQEQPGQHVPEQAGNRDLHVRQQQQQEVQGYECQGRAQPPGDAREDRGLGIPGHHLNSSREHELLQPEPPVLDDFTQLNNAWLSHEGGAEACEDGKIMTHLKKGGGALLVGTAAASGGLSQGENPTSLSFMGQPQNAFQGGSVPCMGMLEPGPHDEDFLSRFMWEGEDTALTAVV
Sbjct: 1 MRPLNGMIDSPSLSLCNTRSVENDTNSWQTSFCWVSRKLVTDSSRNRVVHVAQGRVFGCQTFLQLSSIMPSRTKKIVEGNKLRKVPCVSGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPLSQAPGTQERLLEASSLMPGSVGAVNTYAAMCEDGGEAFYSAFSSGSSSGGATSSSACSSVTSSSAPHSPVVSGGEGEKGDGEEPRQSGSEFQDLEGFHHDHEYRQVEGEENPLDVDLACLFFNDEGHFHPDKAMEHSTLLLDPHPHLTLERQPQPPSQNLNYHGPQEPLESGMDQVMSSQPAIRQPSSHQQQQQQLLPEGKVLQGLPHQQLAPPQSACTPRLLPPLLSTVGSSSSITASLGGRPKQHQQQLQQLYLQQQQQQHSQLKQEQPGQHVPEQAGNRDLHVRQQQQQEVQGYECQGRAQPPGDAREDRGLGIPGHHLNSSREHELLQPEPPVLDDFTQLNNAWLSHEGGAEACEDGKIMTHLKKGGGALLVGTAAASGGLSQGENPTSLSFMGQPQNAFQGGSVPCMGMLEPGPHDEDFLSRFMWEGEDTALTAVV 724
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|585108828|gb|EWM26740.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 103.99 bits (258), Expect = 3.517e-20 Identity = 55/116 (47.41%), Postives = 78/116 (67.24%), Query Frame = 0
Query: 168 LLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGKAITSSTKGKGGAGGQKGLKAVTLPQVSFPSSVHTGIAKTHGSHKQRSKDHPVAPFSGPL 283
+LFL+GL+++GKSWKKIS+IV TRTVVQIRTHAQKYLIK+EKA+K G G +MM+GK + ++ + G + L T VSF S+ + + + ++R K+ P A GP+
Sbjct: 1 MLFLRGLQLHGKSWKKISEIVTTRTVVQIRTHAQKYLIKLEKARKAGHQGVLMMDGKGVDNTE--RRGTSKKSSLSTET---VSFTSTSESSVLE-----QKRQKNEPAAHLPGPV 106
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|585113115|gb|EWM30452.1| (SANT/Myb domain protein [Nannochloropsis gaditana]) HSP 1 Score: 103.219 bits (256), Expect = 2.954e-19 Identity = 67/169 (39.64%), Postives = 90/169 (53.25%), Query Frame = 0
Query: 98 GNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASL---SPMSPAAAPDIPST----------------------SPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKK-------LGLTGTVMMNGKAITSSTKGKG 234
G +S+ GS+S P++ V S N SV + L S A AP ST S ++ + R++ GRW EEH+LFLKGLE++GK WKKI++++KTRTVVQIRTHAQKY K+ KAKK LG+ GT GK + + K +G
Sbjct: 14 GTSSAPCGSNSASPMMPVVTASQNAAESVAGSMLPVSCVASAAIAPQTSSTTVGVAASAPAASPTTSKLHKGTSSMTQLGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNGHHGDMLGMEGT-RFGGKRVKFTGKRRG 181
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|298714408|emb|CBJ27465.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 95.5153 bits (236), Expect = 2.442e-17 Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 0
Query: 154 SPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK 224
+P+++ GRW +EH LFL+GLE++GK WKKI+ ++KTRTVVQIRTHAQKY KI KAK+ G G V M+ K
Sbjct: 2 TPKNT-GRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNGEHGDVAMDSK 71
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|219128113|ref|XP_002184266.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404497|gb|EEC44444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 96.2857 bits (238), Expect = 3.826e-17 Identity = 58/139 (41.73%), Postives = 85/139 (61.15%), Query Frame = 0
Query: 89 SGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNA-SLSPMSP--AAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK 224
SG GN S+ T+ + + +P +S++S ++SV A S++ S + P +T+ S S ++ GRW EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY K+ KA++ G G V M G+
Sbjct: 44 SGRDGNSSNSETNKSNSNRTPTKFPALSEVSHRRSASVSTAHSVTSKSKQNSTPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGR 182
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|1210516787|dbj|GAX24276.1| (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 95.5153 bits (236), Expect = 5.338e-17 Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0
Query: 154 SPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK----AITSSTKGKGGAGGQK 240
+P ++ GRW EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY K+ KA++ G G + M G+ +ITS+T ++
Sbjct: 93 APGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKR 183
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|1210512502|dbj|GAX28359.1| (protein MYSM1 [Fistulifera solaris]) HSP 1 Score: 95.1301 bits (235), Expect = 7.236e-17 Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 0
Query: 154 SPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK----AITSSTKGKGGAGGQK 240
+P ++ GRW EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY K+ KA++ G G + M G+ +ITS+T ++
Sbjct: 94 APGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDITMEGRGGNASITSNTTATAAMTNKR 184
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|432998484|gb|AGB13670.1| (MYB360 [Nannochloropsis sp. YJH-2012]) HSP 1 Score: 92.4337 bits (228), Expect = 1.597e-16 Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0
Query: 134 MSPAAAPDIPSTSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGT----VMMNGKAITSSTKGKGGAGGQK 240
+P PS +P ++ P PGRW ++EHL FL+GL +YG+ W KI ++V TR+ Q+R+HAQKY +I +AK+ G G MM+GK + S + K G+GG+K
Sbjct: 46 FAPCTLDLTPSWAPAPNKEGGPSPLPGRWTKQEHLAFLRGLRVYGRDWNKIQRLVGTRSQPQVRSHAQKYFQRITQAKESGRIGESDFQFMMDGKRMFKSAQ-KRGSGGRK 155
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|219128116|ref|XP_002184267.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404498|gb|EEC44445.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 95.5153 bits (236), Expect = 1.787e-16 Identity = 56/140 (40.00%), Postives = 84/140 (60.00%), Query Frame = 0
Query: 89 SGFSGNESDGNTSSGSGSDSPFPLLTVSQLSPNVTSSVCNASLSPMSPAAAPDIP----STSPPSKRDSSPRDSPGRWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLGLTGTVMMNGK 224
SG GN S+ T+ + + +P +S++ P+ S++ + + S S + P +T+ S S ++ GRW EEH LFL+GLE +GK WKKI+ ++K+RTVVQIRTHAQKY K+ KA++ G G V M G+
Sbjct: 44 SGRDGNSSNSETNKSNSNRTPTKFAALSEV-PHRRSALVSTAHSVTSKSKQNSTPPVDMATASGSASQGSHGENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNGEEGDVAMEGR 182
BLAST of EWM29405.1 vs. NCBI_GenBank
Match: gi|1072235817|gb|OEU20545.1| (hypothetical protein FRACYDRAFT_165241, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 80.1073 bits (196), Expect = 3.597e-15 Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 0
Query: 161 RWNEEEHLLFLKGLEIYGKSWKKISQIVKTRTVVQIRTHAQKYLIKIEKAKKLG 214
RW EEH LFL+GLE++GK WKKI+ ++K+RTVVQIRTHAQKY K+ KAK+ G
Sbjct: 1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54 The following BLAST results are available for this feature:
BLAST of EWM29405.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|