EWM29388.1, cds1255 (CDS) Nannochloropsis gaditana

Overview
NameEWM29388.1
Unique Namecds1255
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:161997..165149 -

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Properties
Property NameValue
Protein idEWM29388.1
ProductNucleolar 27S pre-rRNA processing Urb2/Npa2 domain containing protein
Orig transcript idgnl|cribi|Naga_100042g39.5635.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:161997..165149 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018849Urb2/Npa2_C
Homology
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BLAST of EWM29388.1 vs. NCBI_GenBank
Match: gi|585111917|gb|EWM29388.1| (Nucleolar 27S pre-rRNA processing Urb2/Npa2 domain containing protein [Nannochloropsis gaditana])

HSP 1 Score: 2140.93 bits (5546), Expect = 0.000e+0
Identity = 1050/1050 (100.00%), Postives = 1050/1050 (100.00%), Query Frame = 0 
Query:    1 MAVSLRLGRPGVRSKLLGLLLENMQVSAANAFALKGRINGILAHLRRLVLDELREGTSGEPSPGTLRGKGRRGPRDSDAIPGPSTVRVALTLYAHLLELDLLCDFWVESSDDTSRSSSSDRDTEPSSRTFSTHGSFVKAVVKHISSLVGCRKVVDMLVVSRLYQLLVEKGGPPDGWGRESALALGEHVEDKEERDLVACLFQAQPGNGDQTIGDDGNAGNRDGWQRNLAILGPSLPLWAWYCGKEHLDTFWHSIFSDSYSATRNLTSCHSRPSIRLLTDASFYEISPLACRCIPAWSFYVWESLASMRPGSTPKKGLQQLKGWMERGGVTSLAMATEYACFLSAPTSVGKTKRATSPVEKERNPFVKEWVKYTQDDSNESLARAVHLCRLLNSLPSEYLPSEQAPLRFLFSVFISCGITRNPTSTGRHILALALATSATQALQSSPQEIFPLINNSTHIFEQWFLPVVLSRSAPSLSSSSVPSSAGDEVGLSLLKNYIASFLLRPGNVPTEGGMHVNGAKGQGQEKAMTRLVSCLLKDKLLPLLEKHPGSNGSDDDSDLAHALRLIQALLAPYLSKEGMDASMEGIDGREDILNLAASRLGPAAARHLPFSASSEVFLVLADLMKLVGQNTSEGDALTPAGARRQGSFKLPSHTVLQVLKPGKTGNMCTRASSLKLVAAYLQYGMREEDFAQEGAILEAMVDFAMHVPSASKTPATAFEARQAHFLATAIENTRGGSSVQGQALHRLIDCMYAAQEAFLSRPAGRSRAAVTDTLRRACCFFERLVEAADSREGPAVEAIRLVAQDFLGLASSLVTVLMTRLLDREAPPASNLLSQSELDACLSKVLGVLRLFVRKRWLFPSGSGMRVEDVGRILAPVSALIPVMHRVGGKTGEQLDEVPPAEGPFAGICNLLSTLLKLHPRLVSQSAPPFFLVARALFRLLVVKKTSGNGPYGELGAVKAWVRLIEHIAGQATLLRKHLMMLLVDYLSVYPYLGVEDKEVLQTGAFALIDALNSSEVQHMNAALLDPVGQALLKKLYSEYQQQYKFRGKV 1050
            MAVSLRLGRPGVRSKLLGLLLENMQVSAANAFALKGRINGILAHLRRLVLDELREGTSGEPSPGTLRGKGRRGPRDSDAIPGPSTVRVALTLYAHLLELDLLCDFWVESSDDTSRSSSSDRDTEPSSRTFSTHGSFVKAVVKHISSLVGCRKVVDMLVVSRLYQLLVEKGGPPDGWGRESALALGEHVEDKEERDLVACLFQAQPGNGDQTIGDDGNAGNRDGWQRNLAILGPSLPLWAWYCGKEHLDTFWHSIFSDSYSATRNLTSCHSRPSIRLLTDASFYEISPLACRCIPAWSFYVWESLASMRPGSTPKKGLQQLKGWMERGGVTSLAMATEYACFLSAPTSVGKTKRATSPVEKERNPFVKEWVKYTQDDSNESLARAVHLCRLLNSLPSEYLPSEQAPLRFLFSVFISCGITRNPTSTGRHILALALATSATQALQSSPQEIFPLINNSTHIFEQWFLPVVLSRSAPSLSSSSVPSSAGDEVGLSLLKNYIASFLLRPGNVPTEGGMHVNGAKGQGQEKAMTRLVSCLLKDKLLPLLEKHPGSNGSDDDSDLAHALRLIQALLAPYLSKEGMDASMEGIDGREDILNLAASRLGPAAARHLPFSASSEVFLVLADLMKLVGQNTSEGDALTPAGARRQGSFKLPSHTVLQVLKPGKTGNMCTRASSLKLVAAYLQYGMREEDFAQEGAILEAMVDFAMHVPSASKTPATAFEARQAHFLATAIENTRGGSSVQGQALHRLIDCMYAAQEAFLSRPAGRSRAAVTDTLRRACCFFERLVEAADSREGPAVEAIRLVAQDFLGLASSLVTVLMTRLLDREAPPASNLLSQSELDACLSKVLGVLRLFVRKRWLFPSGSGMRVEDVGRILAPVSALIPVMHRVGGKTGEQLDEVPPAEGPFAGICNLLSTLLKLHPRLVSQSAPPFFLVARALFRLLVVKKTSGNGPYGELGAVKAWVRLIEHIAGQATLLRKHLMMLLVDYLSVYPYLGVEDKEVLQTGAFALIDALNSSEVQHMNAALLDPVGQALLKKLYSEYQQQYKFRGKV
Sbjct:    1 MAVSLRLGRPGVRSKLLGLLLENMQVSAANAFALKGRINGILAHLRRLVLDELREGTSGEPSPGTLRGKGRRGPRDSDAIPGPSTVRVALTLYAHLLELDLLCDFWVESSDDTSRSSSSDRDTEPSSRTFSTHGSFVKAVVKHISSLVGCRKVVDMLVVSRLYQLLVEKGGPPDGWGRESALALGEHVEDKEERDLVACLFQAQPGNGDQTIGDDGNAGNRDGWQRNLAILGPSLPLWAWYCGKEHLDTFWHSIFSDSYSATRNLTSCHSRPSIRLLTDASFYEISPLACRCIPAWSFYVWESLASMRPGSTPKKGLQQLKGWMERGGVTSLAMATEYACFLSAPTSVGKTKRATSPVEKERNPFVKEWVKYTQDDSNESLARAVHLCRLLNSLPSEYLPSEQAPLRFLFSVFISCGITRNPTSTGRHILALALATSATQALQSSPQEIFPLINNSTHIFEQWFLPVVLSRSAPSLSSSSVPSSAGDEVGLSLLKNYIASFLLRPGNVPTEGGMHVNGAKGQGQEKAMTRLVSCLLKDKLLPLLEKHPGSNGSDDDSDLAHALRLIQALLAPYLSKEGMDASMEGIDGREDILNLAASRLGPAAARHLPFSASSEVFLVLADLMKLVGQNTSEGDALTPAGARRQGSFKLPSHTVLQVLKPGKTGNMCTRASSLKLVAAYLQYGMREEDFAQEGAILEAMVDFAMHVPSASKTPATAFEARQAHFLATAIENTRGGSSVQGQALHRLIDCMYAAQEAFLSRPAGRSRAAVTDTLRRACCFFERLVEAADSREGPAVEAIRLVAQDFLGLASSLVTVLMTRLLDREAPPASNLLSQSELDACLSKVLGVLRLFVRKRWLFPSGSGMRVEDVGRILAPVSALIPVMHRVGGKTGEQLDEVPPAEGPFAGICNLLSTLLKLHPRLVSQSAPPFFLVARALFRLLVVKKTSGNGPYGELGAVKAWVRLIEHIAGQATLLRKHLMMLLVDYLSVYPYLGVEDKEVLQTGAFALIDALNSSEVQHMNAALLDPVGQALLKKLYSEYQQQYKFRGKV 1050
The following BLAST results are available for this feature:
BLAST of EWM29388.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585111917|gb|EWM29388.1|0.000e+0100.00Nucleolar 27S pre-rRNA processing Urb2/Npa2 domain... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1257rna1257Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications