EWM29433.1, cds1243 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM29433.1
Unique Name	cds1243
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002457.1:129480..129770 -
Alignment location	CM002457.1:129088..129339 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM29433.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100305g5.5919.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002457.1	supercontig	CM002457.1:129480..129770 -
CM002457.1	supercontig	CM002457.1:129088..129339 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM29433.1 vs. NCBI_GenBank
Match: gi|585111964|gb|EWM29433.1| (hypothetical protein Naga_100305g5 [Nannochloropsis gaditana])

HSP 1 Score: 358.221 bits (918), Expect = 4.810e-125
Identity = 180/180 (100.00%), Postives = 180/180 (100.00%), Query Frame = 0

Query:    1 MEVGDQGGEEGGWEEGREGRIQGRWPGCPHRRIRVQPRGQAFSFFFKERLNRIVRRKLGGDALELRCGVHAEGGFGQRVTRRKGRTVRLIAVAKKRRLHFNFILIEWVDLRQCRALAAARIKGAVGRVKGRAGQREKRQSISSFLASVMRKTWNAPVSARPAATTAGEAPVMATWTSTTW 180
            MEVGDQGGEEGGWEEGREGRIQGRWPGCPHRRIRVQPRGQAFSFFFKERLNRIVRRKLGGDALELRCGVHAEGGFGQRVTRRKGRTVRLIAVAKKRRLHFNFILIEWVDLRQCRALAAARIKGAVGRVKGRAGQREKRQSISSFLASVMRKTWNAPVSARPAATTAGEAPVMATWTSTTW
Sbjct:    1 MEVGDQGGEEGGWEEGREGRIQGRWPGCPHRRIRVQPRGQAFSFFFKERLNRIVRRKLGGDALELRCGVHAEGGFGQRVTRRKGRTVRLIAVAKKRRLHFNFILIEWVDLRQCRALAAARIKGAVGRVKGRAGQREKRQSISSFLASVMRKTWNAPVSARPAATTAGEAPVMATWTSTTW 180

The following BLAST results are available for this feature:

BLAST of EWM29433.1 vs. NCBI_GenBank

BLAST of EWM29433.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585111964\|gb\|EWM29433.1\|	4.810e-125	100.00	hypothetical protein Naga_100305g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna1244	rna1244	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications