EWM30583.1, cds124 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|585113250|gb|EWM30583.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 696.812 bits (1797), Expect = 0.000e+0 Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query: 1 MYEPVNVAPQSTPSLGPKRNTGTWPRARCSPAADAILLMLGMNPLNTLGAVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
MYEPVNVAPQSTPSLGPKRNTGTWPRARCSPAADAILLMLGMNPLNTLGAVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 1 MYEPVNVAPQSTPSLGPKRNTGTWPRARCSPAADAILLMLGMNPLNTLGAVNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|585113251|gb|EWM30584.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 591.652 bits (1524), Expect = 0.000e+0 Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0
Query: 51 VNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
VNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 11 VNVSVPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 300
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|585113252|gb|EWM30585.1| (Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana] >gi|585113253|gb|EWM30586.1| Cell differentiation, Rcd1-like protein [Nannochloropsis gaditana]) HSP 1 Score: 514.227 bits (1323), Expect = 0.000e+0 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 91 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA
Sbjct: 1 MELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 250
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|676387631|ref|XP_009037094.1| (hypothetical protein AURANDRAFT_69805 [Aureococcus anophagefferens] >gi|323452501|gb|EGB08375.1| hypothetical protein AURANDRAFT_69805 [Aureococcus anophagefferens]) HSP 1 Score: 437.573 bits (1124), Expect = 6.493e-152 Identity = 211/278 (75.90%), Postives = 248/278 (89.21%), Query Frame = 0
Query: 66 GGQAYEELIPLVLQLS---ELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
G ++ EEL PLVLQL+ RE+AL+ELSKKRE + DLAP+LWHS GTM LLQEI++IYPML+PP LTA ASNRVCNALALLQCVASH ETRGLFL AH+P+YLYPFLNTV SK+RPFEYLRLTSLGV+GALVK+DD++VI+FLLQTEIIPLCLRIMETG+ELSKTVATFIVQK+LLD+MGLNY+CATAERF+AVSTVL+NMV L+E PS+RLLKHIVRCYLRLS+N RAR+ALRQCLP++LR D TF+ +KDD+T+ RWL++LLYNI+E A
Sbjct: 2 GEKSVEELYPLVLQLTVPDSPEHRESALLELSKKRETFTDLAPILWHSFGTMGTLLQEIVSIYPMLSPPNLTAHASNRVCNALALLQCVASHPETRGLFLNAHVPLYLYPFLNTV-SKNRPFEYLRLTSLGVVGALVKMDDSDVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDDMGLNYVCATAERFYAVSTVLANMVLTLVEQPSIRLLKHIVRCYLRLSDNLRAREALRQCLPESLR-DHTFAGHIKDDLTVKRWLSSLLYNISEQA 277
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|922865202|gb|KOO32309.1| (cell differentiation protein [Chrysochromulina sp. CCMP291]) HSP 1 Score: 433.721 bits (1114), Expect = 2.338e-150 Identity = 213/285 (74.74%), Postives = 248/285 (87.02%), Query Frame = 0
Query: 55 VPAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 339
+P +S S+ + +++ LVL+L+ +RETAL+ELSK+RE +PDLAP+LWHS GT++ALLQEI+AIYP+L+PP LTAQASNRVCNALALLQCVASH +TR LFL AHIP++LYPFLNTV SK+RPFEYLRLTSLGVIGALVKVDDA+VI+FLL TEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YICATAERF+AVSTVL+N+V AL+E PS RLLKHIVRC+LRLS+N RAR+ALRQCLPDALR D TFS CLKDDVT RW LL+NITE
Sbjct: 7 LPGES-SMTPLNAEETDKIFVLVLELTNPDQRETALLELSKRRETFPDLAPILWHSFGTVSALLQEIVAIYPLLSPPALTAQASNRVCNALALLQCVASHPDTRTLFLNAHIPLFLYPFLNTV-SKTRPFEYLRLTSLGVIGALVKVDDADVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLANLVGALVEQPSGRLLKHIVRCFLRLSDNARAREALRQCLPDALR-DATFSACLKDDVTTKRWHTQLLFNITES 288
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|551563190|ref|XP_005768296.1| (hypothetical protein EMIHUDRAFT_414254 [Emiliania huxleyi CCMP1516] >gi|551616220|ref|XP_005788958.1| hypothetical protein EMIHUDRAFT_455065 [Emiliania huxleyi CCMP1516] >gi|485618974|gb|EOD15867.1| hypothetical protein EMIHUDRAFT_414254 [Emiliania huxleyi CCMP1516] >gi|485642452|gb|EOD36529.1| hypothetical protein EMIHUDRAFT_455065 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 430.254 bits (1105), Expect = 4.377e-149 Identity = 212/284 (74.65%), Postives = 244/284 (85.92%), Query Frame = 0
Query: 56 PAQSNSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 339
PAQ +A E++ LVL+L+ +RE AL+ELSK+RE + DLAP+LWHS GT++ALLQEI+AIYP+L+PP+LTAQASNRVCNALALLQCVASH ETR LFL AHIP++LYPFLNT+ SK+RPFEYLRLTSLGVIGALVKVDD +VI+FLL TEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YICATAERF+AVSTVL N+V +L++ PS RLLKHIVRCYLRLS+NPRAR+ALRQCLPD LR D TFS CLKDDVT RWL LL+NITE
Sbjct: 4 PAQRPDHTRPEDEA-EKIFHLVLELTNPEQREAALLELSKRRETFIDLAPILWHSFGTISALLQEIVAIYPLLSPPSLTAQASNRVCNALALLQCVASHPETRTLFLNAHIPLFLYPFLNTI-SKTRPFEYLRLTSLGVIGALVKVDDPDVINFLLSTEIIPLCLRIMETGSELSKTVATFIVQKILLDETGLAYICATAERFYAVSTVLGNLVGSLVDQPSARLLKHIVRCYLRLSDNPRAREALRQCLPDVLR-DATFSACLKDDVTTKRWLTQLLFNITES 284
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|301099265|ref|XP_002898724.1| (cell differentiation protein rcd1 [Phytophthora infestans T30-4] >gi|262104797|gb|EEY62849.1| cell differentiation protein rcd1 [Phytophthora infestans T30-4]) HSP 1 Score: 428.328 bits (1100), Expect = 6.590e-148 Identity = 208/281 (74.02%), Postives = 243/281 (86.48%), Query Frame = 0
Query: 60 NSLAGGGGQAYEELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
NS +A E+L LVL+LS +RE+AL+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH+ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+EVP+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LKDD T +RWLA LLYNI+ A
Sbjct: 20 NSFILDDMEAPEQLYSLVLELSSPEQRESALLELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHSETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVATLVEVPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEALKDDATTSRWLAQLLYNISTDA 298
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|1214710739|gb|OWZ21802.1| (Cell differentiation protein rcd1 [Phytophthora megakarya]) HSP 1 Score: 423.32 bits (1087), Expect = 2.478e-146 Identity = 204/270 (75.56%), Postives = 237/270 (87.78%), Query Frame = 0
Query: 71 EELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
E+L LVL+LS +RE+AL+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+E P+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LKDD T +RWLA LLYNI+ A
Sbjct: 5 EQLYALVLELSSPEQRESALLELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHAETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVATLVEAPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEGLKDDATTSRWLAQLLYNISTDA 272
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|298710510|emb|CBJ25574.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 425.246 bits (1092), Expect = 3.399e-146 Identity = 207/264 (78.41%), Postives = 238/264 (90.15%), Query Frame = 0
Query: 76 LVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEG 339
LVLQL+ +RE AL+ELSKKRE + DLAP+LWHS GT++ALLQE++AIYP+L+PPTLT ASNRVCNALALLQCVASH ETR LFL+AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DDAEVI+FLLQTEIIPLCLRIMETG+ELSKTVATFIVQK+LLDE GL YIC TAERF+AVSTVL NMV L+E PSVRLLKH+VRCYLRLS+N RAR+ALRQCLPDALR++ TF+ LKDDV++ RWL +LL+N+TE
Sbjct: 71 LVLQLTNPDQREGALLELSKKREAFTDLAPILWHSYGTISALLQEMVAIYPLLSPPTLTPHASNRVCNALALLQCVASHPETRALFLKAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKMDDAEVINFLLQTEIIPLCLRIMETGSELSKTVATFIVQKILLDEHGLEYICQTAERFYAVSTVLGNMVAVLVESPSVRLLKHVVRCYLRLSDNLRAREALRQCLPDALRNN-TFTNVLKDDVSVKRWLTSLLFNLTES 332
BLAST of EWM30583.1 vs. NCBI_GenBank
Match: gi|695418130|ref|XP_009527321.1| (hypothetical protein PHYSODRAFT_559218 [Phytophthora sojae] >gi|348678446|gb|EGZ18263.1| hypothetical protein PHYSODRAFT_559218 [Phytophthora sojae]) HSP 1 Score: 422.55 bits (1085), Expect = 4.547e-146 Identity = 203/270 (75.19%), Postives = 238/270 (88.15%), Query Frame = 0
Query: 71 EELIPLVLQLSELSKRETALMELSKKREVYPDLAPVLWHSVGTMAALLQEIIAIYPMLTPPTLTAQASNRVCNALALLQCVASHTETRGLFLQAHIPMYLYPFLNTVMSKSRPFEYLRLTSLGVIGALVKVDDAEVISFLLQTEIIPLCLRIMETGNELSKTVATFIVQKVLLDEMGLNYICATAERFFAVSTVLSNMVQALIEVPSVRLLKHIVRCYLRLSENPRARDALRQCLPDALRSDQTFSQCLKDDVTINRWLANLLYNITEGA 340
E+L LVL+LS +RE+AL+ELSKKRE +P+LAP+LWHS GT+AALLQEI+AIYP+L+PP LTA ASNRVCNALALLQCVASH+ETR FL AHIP+YLYPFLNTV SK+RPFEYLRLTSLGVIGALVK+DD++VI+FLLQTEIIPLCLRIME G+ELSKTVATFIVQK+LLD+MGL YIC T ERF+AV TVLS MV L+E P+ RLLKHI+RCYLRLS+NPRA++ALRQCLP+ALR + TF + LK+D T +RWLA LLYNI+ A
Sbjct: 3 EQLYALVLELSSPEQRESALLELSKKREEFPELAPILWHSFGTVAALLQEIVAIYPLLSPPQLTAHASNRVCNALALLQCVASHSETRTHFLNAHIPLYLYPFLNTV-SKNRPFEYLRLTSLGVIGALVKIDDSDVINFLLQTEIIPLCLRIMEAGSELSKTVATFIVQKILLDDMGLTYICHTPERFYAVGTVLSKMVAVLVEAPAPRLLKHIIRCYLRLSDNPRAKEALRQCLPEALR-NHTFDEALKEDATTSRWLAQLLYNISTDA 270 The following BLAST results are available for this feature:
BLAST of EWM30583.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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