EWM29427.1, cds1239 (CDS) Nannochloropsis gaditana

Overview
NameEWM29427.1
Unique Namecds1239
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:123309..124190 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29427.1
Producthistidine ammonia-lyase
Orig transcript idgnl|cribi|Naga_100305g1.5913.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:123309..124190 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016841ammonia-lyase activity
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
Vocabulary: INTERPRO
TermDefinition
IPR008948L-Aspartase-like
IPR001106Aromatic_Lyase
IPR024083Fumarase/histidase_N
Homology
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|585111958|gb|EWM29427.1| (histidine ammonia-lyase [Nannochloropsis gaditana])

HSP 1 Score: 591.267 bits (1523), Expect = 0.000e+0
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0
Query:    1 MHRWKWLCWIDTMADAINEGNGLGPARMPLLSLGPSRRFTLADLTAVATGTAHLELEASVLESLPVASFFATSVSATLIDSAFSSLPAAPLTCSANFWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDASTFPPFRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVRPAVGAKGGRGGGGGGGGGGGGGEGEGDNEVLRCVPQVGVQGGG 293
            MHRWKWLCWIDTMADAINEGNGLGPARMPLLSLGPSRRFTLADLTAVATGTAHLELEASVLESLPVASFFATSVSATLIDSAFSSLPAAPLTCSANFWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDASTFPPFRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVRPAVGAKGGRGGGGGGGGGGGGGEGEGDNEVLRCVPQVGVQGGG
Sbjct:    1 MHRWKWLCWIDTMADAINEGNGLGPARMPLLSLGPSRRFTLADLTAVATGTAHLELEASVLESLPVASFFATSVSATLIDSAFSSLPAAPLTCSANFWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDASTFPPFRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVRPAVGAKGGRGGGGGGGGGGGGGEGEGDNEVLRCVPQVGVQGGG 293          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|298714010|emb|CBJ27242.1| (Histidyl-tRNA Synthetase Similar to Histidine Ammonia-Lyase [Ectocarpus siliculosus])

HSP 1 Score: 76.6406 bits (187), Expect = 5.286e-12
Identity = 76/231 (32.90%), Postives = 111/231 (48.05%), Query Frame = 0
Query:   36 SRRFTLADLTAVATGTAHLELE-ASVLESLPVASFFATSVSATLIDSAFSSLPAAPLTCSANFWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDAST-FPPFRKGH------------------EVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGS 246
            +R+    D+  VA   A ++L  AS+ ++ PV      S  +   D AF+    A  T + +  +    RA + AR+ SL+ GR+ +R E+L  +  +LN+  T   P   G                   EV  L  +L      PL   L+  E + L  G +   G AA+ A A  N +  AD  AA+ CE T A+  PF AL+FD+ RPHRGQ+A A  LRL+L+GS
Sbjct:   15 ARKVLPEDVLLVAVHGARVDLHPASLDKACPV-----PSTPSRGGDKAFAVSDGAGETVAESSRSETAARATIFARVVSLMNGRSGLRPEVLTLLCDMLNNGVTPLLPKDGGEGPSLARAVLGAGSCLFKGEVRPLLEVLSSCELSPLST-LTGREGSTLELGRFDQIGTAAVAAAAASNAIEIADGVAALTCEATRANTAPFDALNFDV-RPHRGQIACADRLRLMLDGS 238          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|759548523|ref|WP_043268343.1| (tyrosine 2,3-aminomutase [Streptomyces sp. CT34])

HSP 1 Score: 76.2554 bits (186), Expect = 6.767e-12
Identity = 67/206 (32.52%), Postives = 98/206 (47.57%), Query Frame = 0
Query:   78 LIDSAFSSLPAAPLTCSAN-----FWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--FPP--------------------------FRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVR 250
            L+D+A  +   A L  S +      ++ +E RAIL ARL +L +G + VR EIL+R+ + L++  T   P                            + G  VE    +L+    EPL+  L   E  AL  GT A TG   L A A  + V  A++ + +  E   +S  PFQ    D+ RPHRGQ+A+A NLR L+ GS ++R
Sbjct:   82 LVDTAKETELQANLVRSHSAGVGPLFSESEARAILAARLNALARGYSAVRPEILQRLALYLSEGITPAIPEIGSLGASGDLAPLAHLAATVMGEGYLLKDGERVET-GPVLRSLGIEPLE--LRFKEGLALINGTSAMTGLGCLVATAALDQVRQAEIVSGLVVEALRSSAGPFQPEGHDIARPHRGQIASAANLRTLMRGSKLLR 284          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|1159772927|ref|WP_079319002.1| (tyrosine 2,3-aminomutase [Microbispora sp. GKU 823] >gi|1159092660|gb|OPG07007.1| tyrosine 2,3-aminomutase [Microbispora sp. GKU 823])

HSP 1 Score: 73.9442 bits (180), Expect = 3.393e-11
Identity = 70/217 (32.26%), Postives = 94/217 (43.32%), Query Frame = 0
Query:  102 ETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--FPP--------------------------FRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVRPAVGAKGGRGGGGGGGGGGGGGEGE---GDNEVLRCVPQV 287
            E RAIL AR+ +L +G + VR E++ER+ + LN   T   P                            R G  V     +L++   EPL+  L   E  AL  GT A TG  +L      + V  A++  A+ CEV  +S  PF A   D+ RPHRGQ+ TA N+R LL GS +       +     G    GG G    E        LR +PQV
Sbjct:  102 EARAILAARVNALAKGYSAVRPELIERLALYLNLGVTPAIPEIGSLGASGDLAPLSHIAATVIGEGYVLRDGRRVR-TGPVLRELGIEPLR--LRFKEGLALINGTSAMTGLGSLVVGRALDQVRQAEIVTALICEVLQSSTSPFGADGHDVARPHRGQIDTAANMRTLLHGSRLAVDHADLRRELSAGRDENGGRGVHRTEVYLQKAYTLRAIPQV 315          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|1121713971|ref|WP_073920837.1| (tyrosine 2,3-aminomutase [Streptomyces sp. CB00455] >gi|1115855722|gb|OKK14336.1| tyrosine ammonia-lyase [Streptomyces sp. CB00455])

HSP 1 Score: 73.9442 bits (180), Expect = 3.697e-11
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 0
Query:  102 ETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--------------FPPFR--------KGHEVEDLQ-----ALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMV 249
            E RAI+ ARL +L +G + VR E+LER+ + LN+  T                P          +G+ ++D +      +L++   EPLQ  L   E  AL  GT A TG  +L      + V  A++  A+  E    S  PFQA   D+ RPH+GQ+ TA N+R LL GS ++
Sbjct:  107 EARAIMAARLNALSKGYSAVRPELLERLALYLNEGITPAIPEIGSLGASGDLAPLSHIAGTLIGEGYVLKDGKRVPTAEVLREKGIEPLQ--LRFKEGLALINGTSAMTGLGSLVVARALDQVRQAEIGTALVLEALRGSTSPFQAEGHDIARPHQGQIDTAANMRALLSGSRLM 279          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|926395718|ref|WP_053723830.1| (tyrosine 2,3-aminomutase [Streptomyces sp. WM6378] >gi|925420832|gb|KOU54054.1| tyrosine ammonia-lyase [Streptomyces sp. WM6378])

HSP 1 Score: 73.559 bits (179), Expect = 4.565e-11
Identity = 61/182 (33.52%), Postives = 83/182 (45.60%), Query Frame = 0
Query:   97 FWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--FPP--------------------------FRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVR 250
             ++  E RAIL  RL +L +G + VR E+L+R+ + L +  T   P                            R G   E    +L+    EPL+  L   E  AL  GT A TG   L A    + V  A++A  +  EV  +S  PFQ    D+ RPHRGQM TA NLR+L  GS ++R
Sbjct:   95 LFSEREARAILATRLNALAKGYSAVRPELLQRLALYLTEGITPAIPEIGSLGASGDLAPLAHLAATVIGEGYVLRNGERAE-TGPVLRSLGIEPLR--LRFKEGLALINGTSAMTGVGCLVAGRALDQVRQAEIATGLVVEVLRSSASPFQPEGHDLARPHRGQMETATNLRVLTRGSRLLR 273          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|517561702|ref|WP_018731910.1| (tyrosine 2,3-aminomutase [Salinispora pacifica])

HSP 1 Score: 73.559 bits (179), Expect = 5.735e-11
Identity = 63/173 (36.42%), Postives = 80/173 (46.24%), Query Frame = 0
Query:  102 ETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--FPP--------------------------FRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGS 246
            E RAILVARL +L +G + VR E+LER+ + LN   T   P                            R G  V     +L++   EPL+  L   E  +L  GT   TG  +L        V  A++  A+  EV  AS  PFQA   D+ RPHRGQM TA N+R LL GS
Sbjct:  102 EARAILVARLNALAKGHSAVRPELLERLALYLNLGITPAIPEIGSLGASGDLAPLAHLASTVIGEGYVLRHGRRVPT-GDVLREHGIEPLE--LRFKEGLSLINGTSGMTGLGSLVVGRALQQVRQAEIVTALVLEVLRASTSPFQAEGHDIARPHRGQMDTAANMRTLLRGS 271          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|1130978315|ref|WP_075741257.1| (MULTISPECIES: tyrosine 2,3-aminomutase [Actinoalloteichus] >gi|1130031224|gb|APU15545.1| tyrosine 2,3-aminomutase [Actinoalloteichus sp. ADI127-7] >gi|1130037292|gb|APU21612.1| tyrosine 2,3-aminomutase [Actinoalloteichus sp. GBA129-24])

HSP 1 Score: 73.1738 bits (178), Expect = 7.038e-11
Identity = 61/175 (34.86%), Postives = 81/175 (46.29%), Query Frame = 0
Query:  102 ETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--FPP--------------------------FRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAM 248
            E RA+L ARL +L +G + VR E+LER+ + LN   T   P                            R G  VE    +L+Q   EPL   L   E  AL  GT A TG  AL      N V  A++ +A+  E    S  PF A   D+ RPHRGQ+ +A N+R+L+ GS +
Sbjct:  102 EARAVLAARLNALAKGHSAVRPEVLERLALYLNLGITPAIPEIGSLGASGDLAPLAHIASSLIGEGYLLRDGVRVE-TGPVLRQLGIEPLS--LRFKEGLALINGTSAMTGLGALIVDRAVNQVRQAEIVSAMVIETLRGSTSPFLAEGHDVARPHRGQIDSAANMRMLMRGSGL 273          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|1121610702|ref|WP_073836153.1| (tyrosine 2,3-aminomutase [Micromonospora sp. CB01531] >gi|1115703058|gb|OKI62368.1| tyrosine 2,3-aminomutase [Micromonospora sp. CB01531])

HSP 1 Score: 73.1738 bits (178), Expect = 7.336e-11
Identity = 71/225 (31.56%), Postives = 100/225 (44.44%), Query Frame = 0
Query:   97 FWTVAETRAILVARLASLVQGRAFVRREILERMLVLLNDAST--------------FPPFR--------KGHEVEDLQAL-----LQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSA--ADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAMVRPAVGAKGGRGGGGGGGGGGGGGEGEGDNEV-----LRCVPQV 287
             ++  E RA++ ARL +L +G + VR  +LER+ + LN+  T                P          +G+ + D Q +     L+    EPL+  L   E  AL  GT A TG  AL   A H L  A  A++AAA+  E    SM PFQ    D+ RPH GQ+A+A N+R L+ GS +       +           G G G    D  +     LR +PQV
Sbjct:   97 LFSEPEARAVVAARLNALAKGHSAVRPLVLERLALYLNEGLTPAVPEIGSLGASGDLAPLAHIASSLIGEGYLLRDGQKVPTGPVLRALGIEPLR--LRFKEGLALINGTSAMTGVGAL--VASHTLAQARHAEIAAAMVIEALQGSMSPFQPEGHDIARPHAGQIASAANMRALMHGSRLTVEHADLRRQVAASKEKANGNGSGVHRSDVYLQKAYSLRAIPQV 317          
BLAST of EWM29427.1 vs. NCBI_GenBank
Match: gi|759932559|ref|WP_043617829.1| (tyrosine 2,3-aminomutase [Nonomuraea candida])

HSP 1 Score: 72.7886 bits (177), Expect = 8.429e-11
Identity = 62/175 (35.43%), Postives = 82/175 (46.86%), Query Frame = 0
Query:  102 ETRAILVARLASLVQGRAFVRREILERMLVLLN------------------------DASTFP----PFRKGHEVEDLQALLQQPHPEPLQPPLSHTEANALRTGTYASTGPAALHAYAVHNLVSAADMAAAVACEVTHASMEPFQALHFDMHRPHRGQMATAMNLRLLLEGSAM 248
            E RA+L ARL +L +G + VR E+LER+ + LN                         AST        R G  VE  + +L++   EPLQ  L   E  AL  GT A TG   L      + V  A++  A+ CEV   S  PF A   D+ RPH+GQ+  A N+R LL GS +
Sbjct:  102 EARAVLAARLNALSKGYSAVRPELLERIALYLNLGITPAIPEIGSLGASGDLAPLAHVASTLIGEGYVLRDGRRVETGR-VLREFGIEPLQ--LRFKEGLALINGTSAMTGLGCLLVTRALDQVRQAEIVTALICEVLQGSTSPFVADGHDIARPHQGQIDVAANMRALLNGSGL 273          
The following BLAST results are available for this feature:
BLAST of EWM29427.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585111958|gb|EWM29427.1|0.000e+0100.00histidine ammonia-lyase [Nannochloropsis gaditana][more]
gi|298714010|emb|CBJ27242.1|5.286e-1232.90Histidyl-tRNA Synthetase Similar to Histidine Ammo... [more]
gi|759548523|ref|WP_043268343.1|6.767e-1232.52tyrosine 2,3-aminomutase [Streptomyces sp. CT34][more]
gi|1159772927|ref|WP_079319002.1|3.393e-1132.26tyrosine 2,3-aminomutase [Microbispora sp. GKU 823... [more]
gi|1121713971|ref|WP_073920837.1|3.697e-1133.71tyrosine 2,3-aminomutase [Streptomyces sp. CB00455... [more]
gi|926395718|ref|WP_053723830.1|4.565e-1133.52tyrosine 2,3-aminomutase [Streptomyces sp. WM6378]... [more]
gi|517561702|ref|WP_018731910.1|5.735e-1136.42tyrosine 2,3-aminomutase [Salinispora pacifica][more]
gi|1130978315|ref|WP_075741257.1|7.038e-1134.86MULTISPECIES: tyrosine 2,3-aminomutase [Actinoallo... [more]
gi|1121610702|ref|WP_073836153.1|7.336e-1131.56tyrosine 2,3-aminomutase [Micromonospora sp. CB015... [more]
gi|759932559|ref|WP_043617829.1|8.429e-1135.43tyrosine 2,3-aminomutase [Nonomuraea candida][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1240rna1240Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications