EWM29436.1, cds1237 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|585111970|gb|EWM29436.1| (histidyl-trna synthetase [Nannochloropsis gaditana]) HSP 1 Score: 266.159 bits (679), Expect = 3.692e-90 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRRRWRRS 133 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRRRWRRS Sbjct: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRRRWRRS 133
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|1032153626|gb|OAO16942.1| (histidyl-tRNA synthetase [Blastocystis sp. ATCC 50177/Nand II] >gi|1032154655|gb|OAO17877.1| histidyl-tRNA synthetase [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 105.531 bits (262), Expect = 8.446e-24 Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRRR 129 MF+ G PCVG+SIGVERV TI+E ++Q+ +GGL + +P VLVA++G +M HRMR+A LW GI AE+ QENPKL+KQ+ YA E GI ++V+VG +E K G V + Sbjct: 748 MFNAGGKDIPCVGISIGVERVFTILEKQAQE-------------KGGL----KCTP-CSVLVASVGKDMTVHRMRVAADLWRNGIAAEFGYQENPKLQKQLAYALEAGINWVVVVGEEEIKEGKVNLKN 858
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|397596695|gb|EJK56825.1| (hypothetical protein THAOC_23204, partial [Thalassiosira oceanica]) HSP 1 Score: 104.76 bits (260), Expect = 1.670e-23 Identity = 59/126 (46.83%), Postives = 78/126 (61.90%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVK 126 MF +G TPCVGVS+G+ERV T+ME R + +E GG + P V+VLVA+ G N+L RMRLAR+LW A I AE+ QENPKLK ++ A ++ IPF+VI G +E + G K Sbjct: 680 MFQEAGKVTPCVGVSVGIERVFTLMEERLR-----KEQGGS-----------IKRPNVKVLVASAGENLLHERMRLARVLWDANISAEFSQQENPKLKFEIANALDRQIPFMVISGEEEAREGKCK 789
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|950900885|ref|XP_014530234.1| (histidine-tRNA ligase [Blastocystis sp. subtype 4] >gi|902864846|gb|KNB46792.1| histidine-tRNA ligase [Blastocystis sp. subtype 4]) HSP 1 Score: 104.375 bits (259), Expect = 1.844e-23 Identity = 57/125 (45.60%), Postives = 74/125 (59.20%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTV 125 MF+ G PCVG+SIGVERV TI+E ++Q A GE P VLV +IG +M RM++A LW AGI AE+ QENPKL+KQ+ YA E GI ++V++G +E K G V Sbjct: 1082 MFNAGGKDIPCVGISIGVERVFTILEKKAQDA-----------GELRCKP-------CSVLVTSIGKDMTAMRMKVAATLWHAGISAEFGYQENPKLQKQLAYALETGINWVVVMGEEEMKEGKV 1188
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|224010758|ref|XP_002294336.1| (histidyl tRNA synthetase [Thalassiosira pseudonana CCMP1335] >gi|220969831|gb|EED88170.1| histidyl tRNA synthetase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 102.834 bits (255), Expect = 3.705e-23 Identity = 56/131 (42.75%), Postives = 77/131 (58.78%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRRRWR 131 MF +G TPCVGVS+G+ERV T+ME R +Q E GG + P V VLVA+ G N++ RM+L +LW A I AE+ Q+NPKLK ++ A ++ IPF+VI G +E K G K + + Sbjct: 312 MFQEAGKVTPCVGVSVGIERVFTLMEERLRQ---------EQGGS-------IKQPNVSVLVASAGENLMQERMKLTNILWDANISAEFSQQDNPKLKFEIANALDRDIPFMVISGEEEAKEGRCKVKDLK 426
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|855305717|ref|XP_012895514.1| (uncharacterized protein [Blastocystis hominis] >gi|300121084|emb|CBK21466.2| unnamed protein product [Blastocystis hominis]) HSP 1 Score: 101.679 bits (252), Expect = 2.018e-22 Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRRRWR 131 MFS SG Q PCVG+SIGVERV TI+E ++ EG L R +P +V VA+ G + RMR+A +LW GI AE+ Q NPKL+KQ+ YA E G+ ++V+VG +E K+G V + + Sbjct: 754 MFSASGKQIPCVGISIGVERVFTILEKKA-------------ADEGTL----RCAP-CDVFVASAGKELAAQRMRIAGMLWRNGIKAEFGYQANPKLQKQLTYALESGVKWIVVVGEEEMKQGKVNLKNLQ 866
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|260780861|ref|XP_002585554.1| (hypothetical protein BRAFLDRAFT_274629 [Branchiostoma floridae] >gi|229270558|gb|EEN41565.1| hypothetical protein BRAFLDRAFT_274629 [Branchiostoma floridae]) HSP 1 Score: 100.908 bits (250), Expect = 2.506e-22 Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRR 128 MF G + PCVGVSIG+ER+ +IMEA+++ A + R+ +V VA+ NML RM+L LLW GI E ++NPKL Q +YA E GIPFL I+G E K G VK R Sbjct: 379 MFDPKGKKVPCVGVSIGIERLFSIMEAKAEAAEG-----------------KVRTTETQVYVASGQKNMLEERMKLCNLLWEGGIKTELSYKKNPKLLNQFQYAEEHGIPFLAIIGEQELKDGVVKVR 489
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|584018066|ref|XP_006803758.1| (PREDICTED: histidine--tRNA ligase, cytoplasmic-like [Neolamprologus brichardi]) HSP 1 Score: 99.7525 bits (247), Expect = 3.198e-22 Identity = 53/128 (41.41%), Postives = 75/128 (58.59%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRR 128 MF G + PCVGVSIG+ER+ +IME Q+A A+ P + R+ V+++VA+ N+L R++L LW AGI AE + ++NPKL Q++Y E GIP + I+G E K G VK R Sbjct: 245 MFDPKGRRVPCVGVSIGIERIFSIME---QKAEAS--------------PEKVRTTEVQIMVASAQKNLLEERLQLVSELWNAGIKAEVMYKKNPKLLSQLQYCEEAGIPLVAILGEQELKDGVVKLR 355
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|260786598|ref|XP_002588344.1| (hypothetical protein BRAFLDRAFT_114648 [Branchiostoma floridae] >gi|229273505|gb|EEN44355.1| hypothetical protein BRAFLDRAFT_114648 [Branchiostoma floridae]) HSP 1 Score: 100.523 bits (249), Expect = 3.388e-22 Identity = 55/128 (42.97%), Postives = 71/128 (55.47%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRR 128 MF G + PCVGVSIG+ER+ +IMEA+++ A + R+ +V VA+ NML RM+L LLW GI E ++NPKL Q +YA E GIPFL I+G E K G VK R Sbjct: 336 MFDPKGKKVPCVGVSIGIERLFSIMEAKAEAAEG-----------------KVRTTETQVYVASGQKNMLEERMKLCNLLWEGGIKTELSYKKNPKLLNQFQYAEEHGIPFLAIIGEQELKDGVVKVR 446
BLAST of EWM29436.1 vs. NCBI_GenBank
Match: gi|736216923|ref|XP_010778804.1| (PREDICTED: histidine--tRNA ligase, cytoplasmic-like [Notothenia coriiceps]) HSP 1 Score: 97.0561 bits (240), Expect = 3.516e-22 Identity = 52/128 (40.62%), Postives = 74/128 (57.81%), Query Frame = 0 Query: 1 MFSVSGTQTPCVGVSIGVERVLTIMEARSQQARAAREGGGEGGGEGGLPPRRRRSPFVEVLVATIGANMLPHRMRLARLLWAAGIPAEYLPQENPKLKKQMEYAHEQGIPFLVIVGGDERKRGTVKRR 128 MF G + PCVGVSIG+ER+ +IME Q+A A+ +R R+ V+V+V + N+L R++L LW AGI AE + ++NPKL Q++Y + GIP + I+G E K G VK R Sbjct: 110 MFDPKGRKVPCVGVSIGIERIFSIME---QKAEAS--------------AQRVRTTEVQVMVVSAQKNLLEERLKLLTELWNAGIKAEVIYKKNPKLLSQLQYCEDSGIPLVAILGEQELKDGVVKLR 220 The following BLAST results are available for this feature:
BLAST of EWM29436.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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