EWM30596.1, cds123 (CDS) Nannochloropsis gaditana

Overview
NameEWM30596.1
Unique Namecds123
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:327452..328481 -
Alignment locationCM002455.1:325376..327207 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30596.1
Productselenocysteine-specific elongation factor
Orig transcript idgnl|cribi|Naga_100033g50.8435.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:327452..328481 -
CM002455.1supercontigCM002455.1:325376..327207 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0008135translation factor activity, RNA binding
GO:0000166nucleotide binding
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR027417P-loop_NTPase
IPR004161Transl_elong_EFTu/EF1A_2
IPR005225Small_GTP-bd_dom
IPR000795TF_GTP-bd_dom
Homology
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|585113263|gb|EWM30596.1| (selenocysteine-specific elongation factor [Nannochloropsis gaditana])

HSP 1 Score: 1917.12 bits (4965), Expect = 0.000e+0
Identity = 953/953 (100.00%), Postives = 953/953 (100.00%), Query Frame = 0
Query:    1 MCAEESETTSGLSQPVREAKAKKGPAANDPSLEAVDPASKAPTASASSSGSSSSSASSSPFHRFSSPQPSLASQPALPFNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGGLAGGHVGDKLFLRFRRYVFDQEKRMVQRRQAGRDMSGLSLLLGEDTEPEVEVEGDRAEGGEENSVEGGPAEAGRREEVLDGDGVSEPREEEKRVLEGVDLSALEDSASHMYLGSQHPAARGNALRDGPRDEAVATEAVAAVPVQLGAEGDAEWRMGHIEKVRADGLVIVTGLFTMEEDVRNYKDLRVGLRTEEGQEAVEGYVVGPFGKGGKAKVQFPRECHGLEGAWVTLSFSLMPQGEETGKHEDE 953
            MCAEESETTSGLSQPVREAKAKKGPAANDPSLEAVDPASKAPTASASSSGSSSSSASSSPFHRFSSPQPSLASQPALPFNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGGLAGGHVGDKLFLRFRRYVFDQEKRMVQRRQAGRDMSGLSLLLGEDTEPEVEVEGDRAEGGEENSVEGGPAEAGRREEVLDGDGVSEPREEEKRVLEGVDLSALEDSASHMYLGSQHPAARGNALRDGPRDEAVATEAVAAVPVQLGAEGDAEWRMGHIEKVRADGLVIVTGLFTMEEDVRNYKDLRVGLRTEEGQEAVEGYVVGPFGKGGKAKVQFPRECHGLEGAWVTLSFSLMPQGEETGKHEDE
Sbjct:    1 MCAEESETTSGLSQPVREAKAKKGPAANDPSLEAVDPASKAPTASASSSGSSSSSASSSPFHRFSSPQPSLASQPALPFNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGGLAGGHVGDKLFLRFRRYVFDQEKRMVQRRQAGRDMSGLSLLLGEDTEPEVEVEGDRAEGGEENSVEGGPAEAGRREEVLDGDGVSEPREEEKRVLEGVDLSALEDSASHMYLGSQHPAARGNALRDGPRDEAVATEAVAAVPVQLGAEGDAEWRMGHIEKVRADGLVIVTGLFTMEEDVRNYKDLRVGLRTEEGQEAVEGYVVGPFGKGGKAKVQFPRECHGLEGAWVTLSFSLMPQGEETGKHEDE 953          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|219109880|ref|XP_002176693.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411228|gb|EEC51156.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 464.922 bits (1195), Expect = 8.207e-150
Identity = 272/652 (41.72%), Postives = 381/652 (58.44%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGE---GVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLD-VDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEALSE-EDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGGLAGGHV--GDKLFLRFRRY 723
             N+N+GV+GHVDSGKTSLV+ALST LSTA+LDK  QS++RG+TLDLGFS F L    PS  +AS    + LQ+TLVDCPGH SLIRTIIGGAQIID+VLL+VDA KG QAQT EC++LAE+T+P LVVALNK D FP  ER++ +  A A +R  L+++RF +APIV VAA +GGE    +S                      ++ S      E +       +E L + LQ  +  P+R+P G  + +VDHCF ++G+GTVLTGTVL G  SV DV+E P LGL R++KS+Q F R+V   Q GDR G+C+++LDAK +ERG   TPG+V  +  A+  VR++  + G + SG + H+SVGH T+MAT+TF+           D  +  P + +  +   G S  G +A     P   F +EE++++Q ++  +++ +E                         +AL  F+ PV CP+  LVIGSRLD VD                 ++ G+            CRLAF G L++++   +D+ ++R+Y PK R G+I RLG+  P    D   L R+ EV     FKKET+++ F GM+V+T + ++G ++S FG  GK RV F      AG     G+ L LRF+R+
Sbjct:   17 LNVNLGVLGHVDSGKTSLVKALSTLLSTAALDKSKQSRQRGMTLDLGFSCFFL--DMPSHLQASYPDKKNLQITLVDCPGHASLIRTIIGGAQIIDMVLLVVDAVKGWQAQTTECLVLAELTSPYLVVALNKADQFPPPERDQLLEQAAAKIRDRLKATRFANAPIVGVAACVGGEKVAAAS----------------------EDMSKLEVRNETY------NMETLVQTLQDKLPPPKRTPEGSFYFSVDHCFSIRGRGTVLTGTVLNGAASVNDVLEFPTLGLDRKIKSIQMFKRQVQRIQQGDRAGVCVSNLDAKLLERGIAATPGAVQLLKGAIALVRKVPYYVGTLHSGSKFHISVGHTTIMATVTFW-----------DLSVVNPVDTKPSKRYVGSSSLGGDADMAGLPRMTFSFEEEFIHQDDLLESLDGQES---------------------LLHWALLDFQIPVHCPMDSLVIGSRLDTVD-----------------NSTGS---------ASACRLAFSGRLMQSVDPGKDISKLRLYTPKERRGTISRLGD--PHKRTDDDKLVRY-EVFGSDLFKKETNMKAFFGMKVQTERNEIGEIKSSFGTSGKYRVFFP-----AGTEAKEGEPLILRFKRF 572          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|1169023133|ref|XP_020463431.1| (selenocysteine-specific elongation factor [Monopterus albus])

HSP 1 Score: 453.751 bits (1166), Expect = 1.841e-145
Identity = 276/695 (39.71%), Postives = 372/695 (53.53%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQ--TLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLE-----ALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGGLAGGHVGDK---------------------------------LFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF +    P   + S    Q  +LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KGVQ QT EC+++ E+T P +VV LNKIDL P+ +R+  +   T  L + L ++RF++ P++ VAA  GG  A                                  P  E P     G+ +L   L+K   LP+R P G L MAVDHCF ++GQGTV+TGTVL+G +++ D VE+PAL +T+++KS+Q F + V+ A  GDRVG+C+T  D K +ERG +CTPGS+  +  AV +VR+I  F+G + +  + H++VGH TVMA +TFFG                P  G        + L  +P +  D PF ++ +Y YQ E                  V+ +GE R      +Q+AL +FE PV CPL CLVIGS+LD DI                HA               CRLAF G LL+     + +E  LPR+RIYK K +EG + R+ +                 V  +  FKKET+L+ F+G++V  + G+ G +E GFG+ GK ++R  E     G H   K                                 + LRF+RYVFD  K+MVQ
Sbjct:   12 LNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFAV--DLPDHLQGSGGPQQYDSLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVVLNKIDLLPSNKRQSAIEKMTKRLHKTLETTRFKECPVIAVAAKPGGPEA----------------------------------PDTEEPQ----GVPELIELLKKQTYLPQRDPGGDLLMAVDHCFSIRGQGTVMTGTVLQGSLAINDTVEIPALKVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGLVCTPGSLHTLYAAVISVRKIGYFKGSLATRAKFHITVGHETVMARVTFFGL---------------PPVGTSEPRFDTEPLPLQPCS-LDTPFTFDREYFYQDEY-----------------VTSQGEARSN---PKQWALLEFERPVTCPLLCLVIGSKLDTDI----------------HA-------------NACRLAFQGRLLQGFEDKSYAETALPRLRIYKSKQKEGQVERVTD--------------DYTVIGRNLFKKETNLQLFVGLKVTLSTGESGVIEGGFGQSGKFKIRVQE-----GLHPETKQLLNSTSKKKGKGGSKGCPANEEEPKADSEPVSIHLRFKRYVFDPHKKMVQ 582          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|657780909|ref|XP_008318182.1| (PREDICTED: selenocysteine-specific elongation factor isoform X1 [Cynoglossus semilaevis] >gi|657780912|ref|XP_008318184.1| PREDICTED: selenocysteine-specific elongation factor isoform X1 [Cynoglossus semilaevis])

HSP 1 Score: 446.817 bits (1148), Expect = 9.586e-143
Identity = 269/689 (39.04%), Postives = 364/689 (52.83%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEALSEED-----LPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDE------KGGLAGGHVGDK-----------------------LFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF +                +LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KGVQ QT EC+++ E+T P +VV LNKIDL P  +R+  +   T  + + L S+RF++ P++ VAA  GG  A+ S                                  E P     G+ +L + L+K   LP+R P+G L MAVDHCF ++GQGTV+TGT+L+G ++V D VE+PAL +T+++KS+Q F + V+ A  GDRVG+C+T  D K +ERG +CTPGS+  +  AV +VR+I  F+G + +  + H++VGH TVMA ++FFG    V                  E  SD      P +    PF  + +Y YQ E          G+ EAG                EQ+AL +FE PV CPL CLVIGS+LD DI                HA               CRLAF G LL+   +++     LP +RIYK K REG + R+ +                 V  +  FKKET+L+ F+G++V  + G+ G +E GFG+ GK +VR  +      K  L+                              + L F+RY+FD  K+MVQ
Sbjct:   14 LNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFTVDLPDHLRDSGGQQPYDSLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVVLNKIDLLPPNKRQAAIEKMTKRMHKTLESTRFKECPVIAVAAKPGGPEALDS----------------------------------EEPQ----GVPELIQLLKKQTYLPQRDPAGDLLMAVDHCFSIRGQGTVMTGTILQGSLAVNDTVEIPALKVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLYAAVISVRKIGYFKGSLSTRAKFHITVGHETVMAKVSFFGLPPAVA----------------SEVTSDTEPTPTPPSSLQTPFTQDREYFYQDEYV-------RGQGEAG-----------SGPDPEQWALLEFERPVTCPLFCLVIGSKLDADI----------------HA-------------NACRLAFQGRLLQGFEDKNYTETALPNLRIYKTKHREGQVERVSD--------------DYTVIGRNLFKKETNLQLFVGLKVTLSTGERGVIEGGFGQSGKFKVRIQDGLSSETKQSLSSTSKKKGKGGGRGGNEANEEEVRADSQPVGIHLHFKRYIFDPHKKMVQ 587          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|1143377072|ref|XP_019942365.1| (PREDICTED: selenocysteine-specific elongation factor [Paralichthys olivaceus])

HSP 1 Score: 446.817 bits (1148), Expect = 9.705e-143
Identity = 271/695 (38.99%), Postives = 365/695 (52.52%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDF--PFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLE-----ALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGGLAGGHVGDK---------------------------------LFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF +    P   RAS     +LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KG+Q QT EC+++ E+T P +VV LNKIDL P  +R+  +   T  L + L S+RF++ P++ VAA  GG  A                                  P  E P     G+  L   L+K   LP+R P+G L MAVDHCF ++GQGTV+TGT+L+G +++ D VE+PAL +T+++KS+Q F + V+ A  GDRVG+C+T  D K +ERG +CTPGS+  +  AV +VR+I  F+G + +  + H+++GH TVMA +TFFG                P E  D    S    +  P  P     PF  +  Y YQ E   +     +GE  +G +              EQ+AL +FE PV CP  CLVIGS+LD DI                HA               CRLAF G LL+     + +E  LP + IYK K +EG + R+ +                 V  +  FKKET+L+ F+G++V  + G+ G +E GFG+ GK ++R  E     G H   K                                 + L F+RY+FD  K+MVQ
Sbjct:   13 LNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFTV--DLPDQLRASGGQHDSLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGIQTQTAECLLIGELTCPRMVVVLNKIDLLPPNKRQSAIEKMTKRLHKTLESTRFKECPVIAVAAKPGGPEA----------------------------------PDAEEPQ----GVPQLIELLKKQTYLPQRDPAGDLLMAVDHCFSIRGQGTVMTGTILQGSLAINDTVEIPALKVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLYAAVISVRKIGYFKGSLATRAKFHITMGHETVMAKVTFFGLP--------------PVEASD----SSTDTKQPPSLPNSLETPFTCDRQYFYQDEYVTS-----QGESSSGPD-------------PEQWALLEFERPVTCPPLCLVIGSKLDRDI----------------HA-------------NACRLAFQGHLLQGFEDKSYAETALPHLHIYKTKHKEGQVERVSD--------------DYSVIGRNLFKKETNLQLFVGLKVTLSTGESGVIEGGFGQSGKFKIRIQE-----GLHPETKQMLSSTSKKKGKGGSKGGPGNEEESKADSQPVGIHLHFKRYIFDPHKKMVQ 583          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|736178020|ref|XP_010767810.1| (PREDICTED: selenocysteine-specific elongation factor [Notothenia coriiceps])

HSP 1 Score: 444.891 bits (1143), Expect = 1.929e-142
Identity = 260/635 (40.94%), Postives = 352/635 (55.43%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQ--TLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEAL-----SEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDEKGG 706
             N NVGV+GHVDSGKTSL R+LS+  STA+ DK+PQS+ERGITLDLGFSSF +    P   R S    Q   LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KGVQ QT EC+++ E+T P +VV LNKIDL P  +R+  +   T  L + L ++RF++ P++ VAA  GG  A                                  P  E P      + +L   L+K   LP+R P G L MAVDHCF ++GQGTV+TGT+L+G +++ D VE+PAL +T+++KS+Q F R V+ A  GDRVG+C+T  D K +ERG +CTPGS+  +  A+ +VR+I  F+G + +  + H++VGH TVMA +TFFG   +    ++     QP               ++P  P D PF +E +Y +Q E   A     +GE   G +              EQ+AL +FE PV CPL CLVIGS+LD DI                HA               CRLAF G LL+       +E  LPR+RIYK K +EG + R+ +                 V  +  FKKET+L+ F+G++V  + G+ G +E GFG+ GK ++R   K  
Sbjct:   12 LNFNVGVLGHVDSGKTSLARSLSSTASTAAFDKNPQSRERGITLDLGFSSFTV--ELPDHLRDSEGQKQYDNLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPRMVVVLNKIDLLPPNKRQSAIEKMTKRLHKTLENTRFKECPVIAVAAKPGGPEA----------------------------------PDTEEPQ----AVPELIELLKKQTYLPQRDPKGDLLMAVDHCFSIRGQGTVMTGTILQGSLAINDTVEIPALKVTKKIKSVQMFRRPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLYAALISVRKIGYFKGSLSTRAKFHITVGHETVMARVTFFGLPPL-GASERPSVTNQP--------------PSKP-CPLDTPFTFEREYFHQDEYVIA-----QGEASPGCD-------------PEQWALLEFERPVTCPLLCLVIGSKLDTDI----------------HA-------------NACRLAFQGRLLQGFEDKGYAESALPRLRIYKTKHKEGQVERVTD--------------DYTVIGRNLFKKETNLQLFIGLKVTLSTGETGVIEGGFGQSGKFKIRVQGKNN 529          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|1079720518|ref|XP_018529041.1| (PREDICTED: selenocysteine-specific elongation factor isoform X1 [Lates calcarifer])

HSP 1 Score: 444.506 bits (1142), Expect = 8.643e-142
Identity = 273/696 (39.22%), Postives = 369/696 (53.02%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQ--TLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPP------DFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLE-----ALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRF------DEKGGLAGGHVGD----------------------KLFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF +    P   R S    Q  +LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KGVQ QT EC+++ E+T P +VV LNKIDL P  +R+  +   T  L + L  +RF+D P++ VAA  GG  A                                  P  E P     G+ +L   L+K   LP+R P G L MAVDHCF ++GQGTV+TGT+L+G +++ D VE+PAL +T+++KS+Q F + V+ A  GDRVG+C+T  D K +ERG +CTPGS+  +  A+ +VR+I  F+G + +  + H++VGH TVMA +TFFG                        GVS+   + +P  PP      D PF ++ +Y +Q E         +GE  +G +              EQ+AL +FE PV CP   LVIGS+LD DI                HA               CRLAF G LL+     + +E  LPR+RIYK K +EG + R+ +                 V  +  FKKET+L+ F+G++V  + G+ G +E GFG+ GK ++R       D K  L+                             + L F+RYVFD  K+MVQ
Sbjct:   13 LNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFTV--DLPDQLRDSGGQQQYDSLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGVQTQTAECLLIGELTCPCMVVVLNKIDLLPPNKRQSAIEKMTKRLHKTLEGTRFKDCPVIAVAAKPGGPEA----------------------------------PDTEEPQ----GVPELIELLKKQTYLPKRDPGGDLLMAVDHCFSIRGQGTVMTGTILQGSLAINDTVEIPALKVTKKIKSVQMFRKPVSGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLRTLYAAIISVRKIGYFKGSLATRAKFHITVGHETVMARVTFFGLPP--------------------AGVSEPPSDTKP--PPSLPCSLDTPFTFDREYFHQDEYVTG-----QGETSSGPD-------------PEQWALLEFERPVTCPSLSLVIGSKLDTDI----------------HAN-------------ACRLAFQGRLLQGFEDKSYAETALPRLRIYKTKHKEGQVERVSD--------------DYTVIGRNLFKKETNLQLFVGLKVTLSTGESGVIEGGFGQSGKFKIRIQEGLFPDTKQLLSSTSKKKGKGGSKDGPANEEEAKADSQPVSIHLHFKRYVFDPHKKMVQ 585          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|884969122|ref|XP_012993739.1| (PREDICTED: selenocysteine-specific elongation factor [Esox lucius])

HSP 1 Score: 443.736 bits (1140), Expect = 1.524e-141
Identity = 273/690 (39.57%), Postives = 365/690 (52.90%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFL--LPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAE-MAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLEALSEED-----LPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVR------FDEKGGLAGGHVGD---------------------KLFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF   LP      SR      + LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KG+Q QT EC+++ E+T P +VV LNK DL P  +R+  V   T  L + L ++RF+D P++ VAA  GG  A  +                                           L DL   L+    LPRR P G L MAVDHCF ++GQGTV+TGT+L+G ++V D VE+P L +T++VKS+Q F R VT A  GDRVG+C+T  D K +ERG +C+PGS+  +  A+ +VR+I  F+G + +  + H++VGH TVMA +TFFG          +  L+ P+             +ARP    D PF ++ +Y YQ E + G  E +  G                     EQ+AL +FE PV CP+ CLVIGS+LD DI                HA               CRLAF G LLE   E+      LPR+RIYK K +EG + R+ +   A+               +  FKKET+L+ F G++V  + G+ G +E GFG+ GK ++R       + K  LA                            + L+F+RY+FD +K+MVQ
Sbjct:   12 LNFNVGVLGHVDSGKTSLARALSSTSSTAAFDKNPQSRERGITLDLGFSSFTVDLPEKLREDSRHHGH--ENLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGIQTQTAECLLIGELTCPRMVVVLNKTDLLPPNKRQTVVDKMTKRLHKTLENTRFKDCPVIAVAAKPGGPEAPETEE--------------------------------------PTELSDLIELLKSQAYLPRRDPGGDLLMAVDHCFSIRGQGTVMTGTILQGALAVNDTVEIPVLKVTKKVKSIQMFRRPVTGAMQGDRVGVCVTQFDPKLLERGVVCSPGSLRTLQAAIISVRKIGYFKGSLATRAKFHITVGHETVMARVTFFGLP-------PEETLQSPQP---------PAPDARPL---DTPFSFDREYFYQDEYVIGQREAQGAGPDP------------------EQWALLEFERPVTCPVLCLVIGSKLDTDI----------------HAN-------------ACRLAFQGRLLEGFEEKSYAETTLPRLRIYKSKHKEGQVERVTDDYTAI--------------GRNLFKKETNLQLFAGLKVTLSTGEAGVIEGGFGQSGKFKIRVPDGLSLETKQLLASTKKKGKGVTKGDPGKEEEAKAESQPISINLQFKRYIFDPDKKMVQ 581          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|1211386681|ref|XP_021465634.1| (selenocysteine-specific elongation factor [Oncorhynchus mykiss] >gi|642104335|emb|CDQ74722.1| unnamed protein product [Oncorhynchus mykiss])

HSP 1 Score: 443.351 bits (1139), Expect = 2.934e-141
Identity = 272/688 (39.53%), Postives = 366/688 (53.20%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLE-----ALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDE--------------KGGLAGGHVGDK--------------LFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF +                 LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KG+Q QT EC+++ E+T P +VV LNK DL P  +R+  +   T  L + L ++RF+D P++ ++A  GG  A                                  P  E P     G+ +L   L+    LP R P G L MAVDHCF ++GQGTV+TGT+L+G ++V D VE+PAL +T++VKS+Q F R VT A  GDRVG+C+T  D K +ERG +CTPGS+  +  A+ +VR+I  F+G + +  + H++VGH TVMA +TFFG   +  G         P+        S+  L      P D PF ++ +Y +Q E          G++EAG             +  EQ+AL +FE PV CP  CLVIGS+LD DI                HA               CRLAF G LLE     + SE  L R+RIYK K +EG + R+ +                 V  +  FKKET+L+ F+G++V  + G+ G +E GFG+ GK ++R  +              K  + GG  G+               + LRF+RYVFD  K+MVQ
Sbjct:   12 LNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFNVDLPEQLREDPGGHGYDNLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGIQTQTAECLLIGELTCPRMVVILNKTDLLPPNKRQTAIDKMTKRLHKTLENTRFKDCPVIALSAKPGGPEA----------------------------------PETEEPH----GVPELIELLKSQTYLPHRDPGGALLMAVDHCFSIRGQGTVMTGTILQGALAVNDTVEIPALKVTKKVKSVQMFRRPVTGAMQGDRVGVCVTQFDPKLLERGVVCTPGSLHTLHAAIISVRKIGYFKGSLATRAKFHITVGHETVMARVTFFG---LPPGETHQASTTDPQLPTSDPHASEPDLR-----PLDTPFSFDREYFHQDEYV-------IGQREAG----------GAGQDPEQWALLEFEHPVTCPTLCLVIGSKLDTDI----------------HAN-------------VCRLAFQGRLLEGFEEKSYSETTLLRLRIYKTKHKEGQVERVTDDY--------------TVIGRNLFKKETNLQLFVGLKVTLSTGEEGVIEGGFGQSGKFKIRVPDGLSLETKQLLSSSAKKRVKGGAKGEPAKEDDAKTDSQPICINLRFKRYVFDPHKKMVQ 593          
BLAST of EWM30596.1 vs. NCBI_GenBank
Match: gi|929290845|ref|XP_014022593.1| (PREDICTED: selenocysteine-specific elongation factor-like isoform X1 [Salmo salar])

HSP 1 Score: 442.965 bits (1138), Expect = 4.543e-141
Identity = 273/688 (39.68%), Postives = 368/688 (53.49%), Query Frame = 0
Query:   79 FNINVGVMGHVDSGKTSLVRALSTHLSTASLDKHPQSQERGITLDLGFSSFLLPYSAPSPSRASSSTPQTLQVTLVDCPGHGSLIRTIIGGAQIIDLVLLLVDATKGVQAQTVECVMLAEVTAPTLVVALNKIDLFPAEEREEKVRAATAALRRALRSSRFQDAPIVPVAAVMGGETAVGSSSRGVGSGRGGGEKQKGGAAGKRKENSGTRPPGEEHPGIMSLGLEDLSRALQKTISLPRRSPSGPLFMAVDHCFPLKGQGTVLTGTVLRGRVSVQDVVELPALGLTRRVKSLQAFHRRVTEAQHGDRVGLCLTHLDAKEMERGALCTPGSVPWVTWAVGAVRQIRAFRGRVKSGDRIHVSVGHGTVMATLTFFGAKEMVRGRQKDRKLRQPREGRDGEGVSDDGLEARPWAPPDFPFCWEEDYLYQAEMAGAVEDEEEGEKEAGFEVSKEGERRRRREYQEQYALFKFETPVLCPLPCLVIGSRLDVDIGHRQHPEPPDRQQKPTHAQGAREGRLSPVWKGGCRLAFCGTLLE-----ALSEEDLPRVRIYKPKMREGSIYRLGEALPALPKDPPSLARHREVTAQGFFKKETSLRPFLGMEVETAKGQVGRLESGFGRGGKVRVRFDE--------------KGGLAGGHVGDK--------------LFLRFRRYVFDQEKRMVQ 733
             N NVGV+GHVDSGKTSL RALS+  STA+ DK+PQS+ERGITLDLGFSSF +                 LQ TLVDCPGH SLIRTIIGGAQIIDL++L+VD  KG+Q QT EC+++ E+T P +VV LNK DL P  +R+  +   T  L + L ++RF+D P++ ++A  GG  A                                  P  E P     G+ +L   L+    LP R P G L MAVDHCF ++GQGTV+TGT+L+G ++V D VE+PAL +T++VKS+Q F R V  A  GDRVG+C+T  D K +ERG +CTP S+  +  A+ +VR+I  F+G + +  + H++VGH TVMA +TFFG   +  G         P+        S+   + RP    D PF ++ +Y +Q E          G+++AG      G+        EQ+AL +FE PV CP  CLVIGS+LD DI                HA               CRLAF G LLE     + SE  LPR+RIYK K +EG + R+ +                 V  +  FKKET+L+ F+G++V  +KG+ G +E GFG+ GK ++R  E              K  + GG  G+               + LRF+RYVFD  K+MVQ
Sbjct:   12 LNFNVGVLGHVDSGKTSLARALSSTASTAAFDKNPQSRERGITLDLGFSSFTVDLPEQLREDPGGHGYAKLQFTLVDCPGHASLIRTIIGGAQIIDLMMLVVDVVKGIQTQTAECLLIGELTCPRMVVILNKTDLLPPNKRQTAIDKMTKRLHKTLENTRFKDCPVIALSAKPGGPEA----------------------------------PETEEPH----GVPELIELLKSQTYLPHRDPGGALLMAVDHCFSIRGQGTVMTGTILQGALAVNDTVEIPALKVTKKVKSVQMFRRPVAGAMQGDRVGVCVTQFDPKLLERGVVCTPDSLHTLHAALISVRKIGYFKGSLATRAKFHITVGHETVMARVTFFG---LPPGETHQTSTTDPQLPTLDPHASEP--DRRPL---DTPFSFDREYFHQDEYV-------IGQRQAG----GAGQD------PEQWALLEFERPVTCPTLCLVIGSKLDTDI----------------HAN-------------ACRLAFQGRLLEGFEEKSYSETTLPRLRIYKTKHKEGQVERVTD--------------DYTVIGRNLFKKETNLQLFVGLKVTLSKGEAGVIEGGFGQSGKFKIRVPEGLSLETKQLLSSSAKKRVKGGAKGEPAKEDDAKTDSQPICINLRFKRYVFDPHKKMVQ 593          
The following BLAST results are available for this feature:
BLAST of EWM30596.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113263|gb|EWM30596.1|0.000e+0100.00selenocysteine-specific elongation factor [Nannoch... [more]
gi|219109880|ref|XP_002176693.1|8.207e-15041.72predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1169023133|ref|XP_020463431.1|1.841e-14539.71selenocysteine-specific elongation factor [Monopte... [more]
gi|657780909|ref|XP_008318182.1|9.586e-14339.04PREDICTED: selenocysteine-specific elongation fact... [more]
gi|1143377072|ref|XP_019942365.1|9.705e-14338.99PREDICTED: selenocysteine-specific elongation fact... [more]
gi|736178020|ref|XP_010767810.1|1.929e-14240.94PREDICTED: selenocysteine-specific elongation fact... [more]
gi|1079720518|ref|XP_018529041.1|8.643e-14239.22PREDICTED: selenocysteine-specific elongation fact... [more]
gi|884969122|ref|XP_012993739.1|1.524e-14139.57PREDICTED: selenocysteine-specific elongation fact... [more]
gi|1211386681|ref|XP_021465634.1|2.934e-14139.53selenocysteine-specific elongation factor [Oncorhy... [more]
gi|929290845|ref|XP_014022593.1|4.543e-14139.68PREDICTED: selenocysteine-specific elongation fact... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna123rna123Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications