EWM29477.1, cds1194 (CDS) Nannochloropsis gaditana

Overview
NameEWM29477.1
Unique Namecds1194
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:9565..9670 +
Alignment locationCM002457.1:9882..10033 +
Alignment locationCM002457.1:10156..10242 +
Alignment locationCM002457.1:10399..10959 +
Alignment locationCM002457.1:11181..11283 +
Alignment locationCM002457.1:11438..11580 +
Alignment locationCM002457.1:11684..11787 +
Alignment locationCM002457.1:11864..11882 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29477.1
Productcop9 signalosome complex subunit 2
Orig transcript idgnl|cribi|Naga_100128g6.9399.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:9565..9670 +
CM002457.1supercontigCM002457.1:9882..10033 +
CM002457.1supercontigCM002457.1:10156..10242 +
CM002457.1supercontigCM002457.1:10399..10959 +
CM002457.1supercontigCM002457.1:11181..11283 +
CM002457.1supercontigCM002457.1:11438..11580 +
CM002457.1supercontigCM002457.1:11684..11787 +
CM002457.1supercontigCM002457.1:11864..11882 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR013143PAM
Homology
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|585112018|gb|EWM29477.1| (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 864.759 bits (2233), Expect = 0.000e+0
Identity = 424/424 (100.00%), Postives = 424/424 (100.00%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVHTDRH 424
            MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVHTDRH
Sbjct:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVHTDRH 424          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|585112017|gb|EWM29476.1| (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 857.825 bits (2215), Expect = 0.000e+0
Identity = 419/420 (99.76%), Postives = 419/420 (99.76%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420
            MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILK H
Sbjct:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKTH 420          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|553179429|ref|XP_005852701.1| (cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|553191278|ref|XP_005855354.1| cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422293711|gb|EKU21011.1| cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422295832|gb|EKU23131.1| cop9 signalosome complex subunit 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 517.694 bits (1332), Expect = 1.531e-180
Identity = 287/419 (68.50%), Postives = 291/419 (69.45%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKV 419
            MDED+KDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYT                            V+ +SS S   A+                            QRLWFKTNLKLGHLLLSEAMQKEG                                           EESVRLLGRLQRLIKDLLKSCEGP EGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITW                       DYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKV
Sbjct:    1 MDEDDKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYT----------------------------VTPASSHSARAAV---------------------------TQRLWFKTNLKLGHLLLSEAMQKEG-------------------------------------------EESVRLLGRLQRLIKDLLKSCEGPLEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITW-----------------------DYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKV 298          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|357131345|ref|XP_003567299.1| (PREDICTED: COP9 signalosome complex subunit 2 [Brachypodium distachyon] >gi|721633973|ref|XP_010230789.1| PREDICTED: COP9 signalosome complex subunit 2 [Brachypodium distachyon] >gi|721633976|ref|XP_010230790.1| PREDICTED: COP9 signalosome complex subunit 2 [Brachypodium distachyon] >gi|944068460|gb|KQK03944.1| hypothetical protein BRADI_2g10780 [Brachypodium distachyon] >gi|944068461|gb|KQK03945.1| hypothetical protein BRADI_2g10780 [Brachypodium distachyon] >gi|944068462|gb|KQK03946.1| hypothetical protein BRADI_2g10780 [Brachypodium distachyon])

HSP 1 Score: 297.36 bits (760), Expect = 2.063e-93
Identity = 169/416 (40.62%), Postives = 243/416 (58.41%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420
            D + E+Y FEYSD+E EE DV +EN YY +KG+  + D  GA+ G   V+R+E   E+GEWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK +
Sbjct:    2 DADMEDYGFEYSDDEPEEQDVDIENQYYNSKGM-VETDAEGALAGFDAVVRMEP--EKGEWGFKALKQTVKIYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQK------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKTN 327          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|670429189|ref|XP_008655477.1| (COP9 signalosome complex subunit 2 isoform X2 [Zea mays] >gi|1142831157|gb|AQK89243.1| COP9 signalosome complex subunit 2 [Zea mays])

HSP 1 Score: 296.59 bits (758), Expect = 4.573e-93
Identity = 169/414 (40.82%), Postives = 242/414 (58.45%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILK 418
            D + E+Y FEYSDEE EE DV +EN YY +KGL  + D  GA+ G  +V+ +E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ ++ A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK
Sbjct:    4 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGL-VETDPEGALAGFDQVVSMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQR------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWDEAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDSEILAMTNLIAAYQKNDIMEFEKILK 327          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|524864469|ref|XP_005089070.1| (PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Aplysia californica])

HSP 1 Score: 295.819 bits (756), Expect = 9.074e-93
Identity = 169/412 (41.02%), Postives = 232/412 (56.31%), Query Frame = 0
Query:    9 EEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420
            +EEEYD  YS+E   E DV LEN YY +K LK + D   A+E  Q+VL LE   E+GEWGFKALKQ +K+ F LG Y+ M+ RY  LL +           ++AVT+N +EK ++S+LD +S+S    LL+  Y+TTL  L+                 +N+RLWFKTN KL                              G +   RG                          RLQR++K L +SC+            G D +K+GTQLLE+YAL++Q++  QK+++KLK LY+ +L I   +PHP  +GV++ECGG+M++ E +Y  A   FF +FK YDE+G PRR T LKYLVLA+ML  S I+PFDSQE KPYK + E++AM NL+ A+QN+D+  FE ILK +
Sbjct:   11 DEEEYDLVYSEESNSEPDVDLENQYYNSKALK-EDDPKAALESFQKVLELEGK-EKGEWGFKALKQMIKINFRLGNYDEMMVRYKLLLTY----------IKSAVTRNYSEKSINSILDYISTSKQMELLQDFYETTLDALKEA---------------KNERLWFKTNTKL------------------------------GKLYYDRGD-----------------------YPRLQRILKQLHQSCQT---------DDGADDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEYEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQETKPYKNDPEILAMTNLVSAYQNNDINDFEKILKTN 333          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|1169019375|ref|XP_020461391.1| (COP9 signalosome complex subunit 2 isoform X1 [Monopterus albus])

HSP 1 Score: 295.434 bits (755), Expect = 1.846e-92
Identity = 168/420 (40.00%), Postives = 239/420 (56.90%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420
            M++D    +EE+YD EYS++   E +V LEN YY +K LK + D   A+   Q+VL LE  GE+GEWGFKALKQ +K+ F L  +  M+ RY  LL +           R+AVT+N +EK ++S+LD +S+S    LL+  Y+TTL  L+                 +N RLWFKTN KLG L                                                 +L  EE     G+LQ++++ L +SC+       +    G D +K+GTQLLE+YAL++Q++  QK+++KLK LY+ +L I   +PHP  +GV++ECGG+M++ E ++  A   FF +FK YDE+G PRR T LKYLVLA+ML  S I+PFDSQEAKPYK + E++AM NL+ A+QN+D+  FE ILK +
Sbjct:    4 MEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALK-EDDPKAALSSFQKVLELE--GEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTY----------IRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDA---------------KNDRLWFKTNTKLGKL-------------------------------------------------YLEREE----YGKLQKILRQLHQSCQLVLYLTQQQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTN 342          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|1070889336|gb|OEL14181.1| (COP9 signalosome complex subunit 2, partial [Dichanthelium oligosanthes])

HSP 1 Score: 294.664 bits (753), Expect = 1.951e-92
Identity = 168/414 (40.58%), Postives = 242/414 (58.45%), Query Frame = 0
Query:    7 DMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSP--SLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILK 418
            D + E+Y FEYSDEE EE DV +EN YY +KG+  + D  GA+ G  +V+++E   E+ EWGFKALKQ+VK+ + LG+Y+ M++ Y  +L +           ++AVT+N +EK +++++D VS S+S   SLL+  Y TTL  LE                 +N+RLWFKTNLKL  +        + GE+                                               GR+ +++K+L KSC+       EDGS   D  K+GTQLLEVYA+++Q++   K+++KLK+LY+ AL I   +PHPR +G+++ECGG+M+M E+ +  A   FF +FK YDEAG+PRR   LKYLVLA+ML  S ++PFD QEAKPYK + E++AM NLI A+Q +D+  FE ILK
Sbjct:    1 DADMEDYGFEYSDEEPEEQDVDIENQYYNSKGM-VETDPEGALAGFDQVVKMEP--EKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTY----------IKSAVTRNYSEKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEA---------------KNERLWFKTNLKLCKIWF------DMGEY-----------------------------------------------GRMSKILKELHKSCQR------EDGS---DDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYQRALSIKSAIPHPRIMGIIRECGGKMHMAERQWAEAATDFFEAFKNYDEAGNPRRIQCLKYLVLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILK 324          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|724961494|ref|XP_010354932.1| (PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Rhinopithecus roxellana])

HSP 1 Score: 293.123 bits (749), Expect = 2.556e-92
Identity = 168/420 (40.00%), Postives = 238/420 (56.67%), Query Frame = 0
Query:    1 MDEDEKDMEEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420
            M++D    +EE+YD EYS++   E +V LEN YY +K LK + D   A+   Q+VL LE  GE+GEWGFKALKQ +K+ F L  +  M+ RY  LL +           R+AVT+N +EK ++S+LD +S+S    LL+  Y+TTL  L+                 +N RLWFKTN KLG L                                                 +L  EE     G+LQ++++ L +SC+            G D +K+GTQLLE+YAL++Q++  QK+++KLK LY+ +L I   +PHP  +GV++ECGG+M++ E ++  A   FF +FK YDE+G PRR T LKYLVLA+ML  S I+PFDSQEAKPYK + E++AM NL+ A+QN+D+  FE ILK +
Sbjct:    4 MEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALK-EDDPKAALSSFQKVLELE--GEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTY----------IRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALKDA---------------KNDRLWFKTNTKLGKL-------------------------------------------------YLEREE----YGKLQKILRQLHQSCQT---------DDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTN 333          
BLAST of EWM29477.1 vs. NCBI_GenBank
Match: gi|908488188|ref|XP_013094390.1| (PREDICTED: COP9 signalosome complex subunit 2-like [Biomphalaria glabrata])

HSP 1 Score: 294.664 bits (753), Expect = 2.590e-92
Identity = 169/412 (41.02%), Postives = 231/412 (56.07%), Query Frame = 0
Query:    9 EEEEYDFEYSDEEVEEADVVLENAYYAAKGLKAQGDLAGAVEGMQEVLRLEAAGERGEWGFKALKQSVKMLFALGQYEAMLERYVFLLDHYTVTPASFHGARAAVTQNVAEKGLDSVLDLVSSSSSPSLLRALYDTTLARLEGGEESGREGRAEGGARRRNQRLWFKTNLKLGHLLLSEAMQKEGGEHRAWRPSSLLLPLVSGSIPSGRGSPLILTLHCLLSPSFLPSEESVRLLGRLQRLIKDLLKSCEGPQEGPGEDGSAGGDTIKRGTQLLEVYALQMQLFALQKDSRKLKDLYKLALGITWGVPHPRTLGVLQECGGRMYMDEKDYNAAIQAFFSSFKCYDEAGDPRRFTLLKYLVLASMLHASTIDPFDSQEAKPYKEEREVVAMRNLILAFQNHDVKAFETILKVH 420
            +EEEYD  YS+E   E DV LEN YY +K LK + D   A+E  Q+VL LE   E+GEWGFKALKQ +K+ F L  YE M+ RY  LL +           ++AVT+N +EK ++S+LD +S+S    LL+  Y+TTL  L+                 +N+RLWFKTN KL                              G +   RG                          RLQR++K L +SC+            G D +K+GTQLLE+YAL++Q++  QK+++KLK LY+ +L I   +PHP  +GV++ECGG+M++ E +Y  A   FF +FK YDE+G PRR T LKYLVLA+ML  S I+PFDSQE KPYK + E++AM NL+ A+QN+D+  FE ILK +
Sbjct:   11 DEEEYDLVYSEESNSEPDVDLENQYYNSKALK-EDDPKAALESFQKVLELEGK-EKGEWGFKALKQMIKINFRLTNYEEMMVRYKLLLTY----------IKSAVTRNYSEKSINSILDYISTSKQMELLQDFYETTLDALKEA---------------KNERLWFKTNTKL------------------------------GKLYYDRGD-----------------------YPRLQRILKQLHQSCQT---------DDGADDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEYEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQETKPYKNDPEILAMTNLVSAYQNNDINDFEKILKTN 333          
The following BLAST results are available for this feature:
BLAST of EWM29477.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112018|gb|EWM29477.1|0.000e+0100.00cop9 signalosome complex subunit 2 [Nannochloropsi... [more]
gi|585112017|gb|EWM29476.1|0.000e+099.76cop9 signalosome complex subunit 2 [Nannochloropsi... [more]
gi|553179429|ref|XP_005852701.1|1.531e-18068.50cop9 signalosome complex subunit 2 [Nannochloropsi... [more]
gi|357131345|ref|XP_003567299.1|2.063e-9340.63PREDICTED: COP9 signalosome complex subunit 2 [Bra... [more]
gi|670429189|ref|XP_008655477.1|4.573e-9340.82COP9 signalosome complex subunit 2 isoform X2 [Zea... [more]
gi|524864469|ref|XP_005089070.1|9.074e-9341.02PREDICTED: COP9 signalosome complex subunit 2 isof... [more]
gi|1169019375|ref|XP_020461391.1|1.846e-9240.00COP9 signalosome complex subunit 2 isoform X1 [Mon... [more]
gi|1070889336|gb|OEL14181.1|1.951e-9240.58COP9 signalosome complex subunit 2, partial [Dicha... [more]
gi|724961494|ref|XP_010354932.1|2.556e-9240.00PREDICTED: COP9 signalosome complex subunit 2 isof... [more]
gi|908488188|ref|XP_013094390.1|2.590e-9241.02PREDICTED: COP9 signalosome complex subunit 2-like... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1195rna1195Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications