EWM29474.1, cds1192 (CDS) Nannochloropsis gaditana

Overview
NameEWM29474.1
Unique Namecds1192
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002457.1:4226..5296 -

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Properties
Property NameValue
Protein idEWM29474.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100128g4.9396.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002457.1supercontigCM002457.1:4226..5296 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM29474.1 vs. NCBI_GenBank
Match: gi|585112015|gb|EWM29474.1| (hypothetical protein Naga_100128g4 [Nannochloropsis gaditana])

HSP 1 Score: 741.495 bits (1913), Expect = 0.000e+0
Identity = 356/356 (100.00%), Postives = 356/356 (100.00%), Query Frame = 0 
Query:    1 MLLSRLPRNKSKFYIHKMLLRLTIPQAISHRTQGCLRRAHAAVGHTAAYTINSGSFKLVFISTIMVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECVDGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPPWRENDKRKHEARASGDSSNAGQGWR 356
            MLLSRLPRNKSKFYIHKMLLRLTIPQAISHRTQGCLRRAHAAVGHTAAYTINSGSFKLVFISTIMVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECVDGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPPWRENDKRKHEARASGDSSNAGQGWR
Sbjct:    1 MLLSRLPRNKSKFYIHKMLLRLTIPQAISHRTQGCLRRAHAAVGHTAAYTINSGSFKLVFISTIMVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECVDGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPPWRENDKRKHEARASGDSSNAGQGWR 356
[Close]
BLAST of EWM29474.1 vs. NCBI_GenBank
Match: gi|553191267|ref|XP_005855351.1| (hypothetical protein NGA_0119300 [Nannochloropsis gaditana CCMP526] >gi|422293708|gb|EKU21008.1| hypothetical protein NGA_0119300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 607.06 bits (1564), Expect = 0.000e+0
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0 
Query:   65 MVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECVDGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPPWRENDKRKHEARASGDSSNAGQGWR 356
            MVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECVDGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPPWRENDKRKHEARASGDSSNAGQGWR
Sbjct:    1 MVNTSDDRDMPSSRSQGLGLEKLDSDYEESASRFSSSLPSVDMNAAINTLKRCEDRYKTEITKIGRNLRTFFETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECVDGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPPWRENDKRKHEARASGDSSNAGQGWR 292
[Close]
BLAST of EWM29474.1 vs. NCBI_GenBank
Match: gi|585099627|gb|EWM20202.1| (hypothetical protein Naga_100973g3 [Nannochloropsis gaditana])

HSP 1 Score: 294.278 bits (752), Expect = 2.680e-96
Identity = 156/196 (79.59%), Postives = 170/196 (86.73%), Query Frame = 0 
Query:  137 ETQLDPSSPSSTDKTLESMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGPSSRLFAVVSFTGLSSMLAASAATSLATTDLVKKAMEVVAADGSKKEGTQKSWPYLLTCRPVLQLKECV-DGPCRDLLLGGKVQGGVGFVQAYHQCRRRADLWATQDEFLAIQEEEGLRDVYEDEEELESENTIEQECSKEQGPPP 331
            +T L+PSSPSSTD T+ +MYSDYNLTIFSHSLIGGAFGYVLARSVTTRLG S RL A VSFTGLSS+LAASAATSLAT DLVKKAME V ADGSKK+ TQKS PYLLTCRP+ QLKEC  DGPCRDLLLGGKV+GG+GFVQAYHQCRRRADLWAT DEF AIQE+EGL  VYE +EELE+E   E+E  +EQGP P
Sbjct:   20 QTHLNPSSPSSTDNTVRNMYSDYNLTIFSHSLIGGAFGYVLARSVTTRLGISPRLVAFVSFTGLSSVLAASAATSLATADLVKKAMETVVADGSKKQATQKSSPYLLTCRPLPQLKECGDDGPCRDLLLGGKVRGGIGFVQAYHQCRRRADLWATYDEFWAIQEDEGLTGVYEYDEELETEGATERESLREQGPQP 215
The following BLAST results are available for this feature:
BLAST of EWM29474.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585112015|gb|EWM29474.1|0.000e+0100.00hypothetical protein Naga_100128g4 [Nannochloropsi... [more]
gi|553191267|ref|XP_005855351.1|0.000e+0100.00hypothetical protein NGA_0119300 [Nannochloropsis ... [more]
gi|585099627|gb|EWM20202.1|2.680e-9679.59hypothetical protein Naga_100973g3 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1193rna1193Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications