EWM29507.1, cds1167 (CDS) Nannochloropsis gaditana

Overview
NameEWM29507.1
Unique Namecds1167
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1381247..1381365 +
Alignment locationCM002456.1:1381509..1381692 +
Alignment locationCM002456.1:1381933..1382013 +
Alignment locationCM002456.1:1382166..1382334 +
Alignment locationCM002456.1:1382521..1382579 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29507.1
Productwos2 protein
Orig transcript idgnl|cribi|Naga_100744g1.3821.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1381247..1381365 +
CM002456.1supercontigCM002456.1:1381509..1381692 +
CM002456.1supercontigCM002456.1:1381933..1382013 +
CM002456.1supercontigCM002456.1:1382166..1382334 +
CM002456.1supercontigCM002456.1:1382521..1382579 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR007052CS_dom
IPR008978HSP20-like_chaperone
Homology
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|585112067|gb|EWM29507.1| (wos2 protein [Nannochloropsis gaditana])

HSP 1 Score: 403.29 bits (1035), Expect = 4.061e-142
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0
Query:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGGMGGMGNLQEMMAGMGKGDAGAYGGDEDSDDEELPDLESDEAEEGGKEGKE 203
            MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGGMGGMGNLQEMMAGMGKGDAGAYGGDEDSDDEELPDLESDEAEEGGKEGKE
Sbjct:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGGMGGMGNLQEMMAGMGKGDAGAYGGDEDSDDEELPDLESDEAEEGGKEGKE 203          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|553190853|ref|XP_005855276.1| (wos2 protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293777|gb|EKU21077.1| wos2 protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 267.314 bits (682), Expect = 1.975e-89
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0
Query:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGM 128
            MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGM
Sbjct:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGM 128          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|299471956|emb|CBN79635.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.369 bits (381), Expect = 3.348e-42
Identity = 76/124 (61.29%), Postives = 92/124 (74.19%), Query Frame = 0
Query:    2 TNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLE 125
             N APVKWAQR+DSIY+T+ LPDV DE+++L  + L F G SN K Y   LEFL  V  + S WKVLPRSIQ+ + KE ED  FWERLLKDK LEKTNVK+DW+++VDEDE+E    FDMS L+
Sbjct:    3 VNTAPVKWAQRADSIYLTLDLPDVKDEQLKLTKDMLSFSGTSNDKKYALDLEFLHDVNSEKSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALD 126          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|1210531625|dbj|GAX09981.1| (hypothetical protein FisN_11Lh028 [Fistulifera solaris])

HSP 1 Score: 142.895 bits (359), Expect = 1.814e-39
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0
Query:    3 NVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLE 125
            N AP+KWAQRSDSIY+TI L DV DE I L   +L FKG S GK+Y   +EF + V  +GS +K LPRS+Q+ + K+E D  FW RLLKDK  EK  VK+DWDRYVDED+E     FD S L+
Sbjct:    4 NTAPIKWAQRSDSIYLTIALSDVKDESINLKDATLTFKGTSEGKEYAIDIEFFKDVNAEGSTYKTLPRSVQMHIMKKESDEEFWPRLLKDKNKEKNQVKIDWDRYVDEDDEAD--GFDTSALD 124          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|1210526861|dbj|GAX14509.1| (hypothetical protein FisN_11Hh028 [Fistulifera solaris])

HSP 1 Score: 142.51 bits (358), Expect = 2.558e-39
Identity = 70/123 (56.91%), Postives = 85/123 (69.11%), Query Frame = 0
Query:    3 NVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLE 125
            N AP+KWAQRSDSIY+TI L DV DE I L   +L FKG S GK+Y   +EF + V  +GS +K LPRS+Q+ + K+E D  FW RLLKDK  EK  VK+DWDRYVDED+E     FD S L+
Sbjct:    4 NTAPIKWAQRSDSIYLTIALSDVKDESINLKDATLTFKGTSEGKEYAIDIEFFKDVNAEGSTYKTLPRSVQMHIMKKESDEEFWPRLLKDKTKEKNQVKIDWDRYVDEDDEAD--GFDTSALD 124          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|219109904|ref|XP_002176705.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411240|gb|EEC51168.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 137.117 bits (344), Expect = 3.996e-37
Identity = 75/126 (59.52%), Postives = 88/126 (69.84%), Query Frame = 0
Query:    1 MTNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEEDT-GFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLE 125
            + N AP+KWAQRSDS+Y+TI LPDV DE I L   +L FKG S  K YE ++EF + V    S +KVLPRSIQ+ + K EED   FW RLLKDK LEK  VK+DWDRYVDEDEE+    FD S LE
Sbjct:    6 INNTAPIKWAQRSDSLYLTIALPDVKDETINLEDQTLKFKGTSGDKSYEVNIEFFKKVDAKDSTYKVLPRSIQMHVMKHEEDREEFWPRLLKDKALEKNQVKIDWDRYVDEDEEDE--GFDTSALE 129          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|223995981|ref|XP_002287664.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220976780|gb|EED95107.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 135.576 bits (340), Expect = 1.938e-36
Identity = 75/131 (57.25%), Postives = 89/131 (67.94%), Query Frame = 0
Query:    2 TNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQILLKKEEED-------TGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLE 125
             N AP+KWAQRSDS+Y+TI LPDV +E I L   +L FKGKS GKDYE  + F ++V  +GS +KVLPRS+Q+ + K  +          FW RLLKDK LEK  VKVDWDRYVDEDEEE    FD S LE
Sbjct:    4 VNTAPIKWAQRSDSLYITIALPDVKEESINLENQTLKFKGKSEGKDYEVDIVFFKSVDAEGSTYKVLPRSVQMHVMKASKKDGDDDEEEEFWPRLLKDKALEKNQVKVDWDRYVDEDEEEE--GFDTSALE 132          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|1072236578|gb|OEU21306.1| (HSP20-like chaperone [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 134.035 bits (336), Expect = 3.761e-36
Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 0
Query:    2 TNVAPVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDGSVWKVLPRSIQI-LLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLE 125
            TN AP+K+AQR DSIY+TI L DV DE I L    L F+G S GK YE ++EF + V  +GS + VLPRS+Q+ +LK E+E+  FW RLLKDK LEK  +K+DWDRYV  DE+E    FDMSN++
Sbjct:    3 TNAAPIKYAQRKDSIYLTIALADVKDETIVLTDTELKFEGTSGGKKYEVNIEFFKKVDSEGSTYNVLPRSVQMHILKDEKEEEEFWTRLLKDKALEKNQIKIDWDRYV--DEDEEEEGFDMSNMD 125          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|1173957166|gb|OQS03760.1| (hypothetical protein THRCLA_03944 [Thraustotheca clavata])

HSP 1 Score: 132.88 bits (333), Expect = 7.879e-36
Identity = 84/188 (44.68%), Postives = 101/188 (53.72%), Query Frame = 0
Query:    5 APVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDG--SVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGGMGGMGNLQEMMAGMGKGDAGAYGGDEDSDDEELPDLE 190
            APVKWAQR+DS+YVT+ LPDV DEK+ L  +SL F G SN + YE  LEFL  V      S W   PR++   + K++++  FW  LLKDK LEKTNVKVDW++YVDEDE E +  FDMS L GG      GG      M   GGM G        +                        EELPDLE
Sbjct:   10 APVKWAQRADSLYVTVDLPDVKDEKVVLTNSSLKFTGTSNQQKYEVTLEFLHEVDTAAKESKWAATPRNVHFYILKKDKEAPFWPHLLKDKALEKTNVKVDWNKYVDEDEAEDDQGFDMSALSGG------GGFDINQMMAQQGGMPGDMDEEDSDD------------------------EELPDLE 167          
BLAST of EWM29507.1 vs. NCBI_GenBank
Match: gi|953486346|emb|CEG49677.1| (HSP90 co-chaperone p23 [Plasmopara halstedii])

HSP 1 Score: 130.568 bits (327), Expect = 4.882e-35
Identity = 84/191 (43.98%), Postives = 110/191 (57.59%), Query Frame = 0
Query:    5 APVKWAQRSDSIYVTICLPDVTDEKIELGTNSLDFKGKSNGKDYECHLEFLRTVKKDG--SVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDFSQLGGMGGMGGMGGMGGMGGMGGMGGMGNLQEMMAGMGKGDAGAYGGDEDSDDEELPDLESDE 193
            APVKWAQR D++YVT+ LPDV DEK+ L + +L FKG SNGK YE  L+F + V  +   S+W    R++   + K+ +D  FW RLL DK LEKTNVKVDW ++VDEDE+E    FDMS L GG                           GG  ++ EMMA   +  AG      DSDDE++PDL+ ++
Sbjct:    9 APVKWAQRKDALYVTVDLPDVKDEKVSLNSKNLTFKGTSNGKVYEVTLDFFKEVDAEAKDSIWAKTDRNLHFHIVKKNQDEEFWPRLLVDKNLEKTNVKVDWTKFVDEDEDEEPSGFDMSALNGG---------------------------GGF-DMNEMMAA--QNGAGMMDDGSDSDDEDMPDLDPND 169          
The following BLAST results are available for this feature:
BLAST of EWM29507.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112067|gb|EWM29507.1|4.061e-142100.00wos2 protein [Nannochloropsis gaditana][more]
gi|553190853|ref|XP_005855276.1|1.975e-89100.00wos2 protein, partial [Nannochloropsis gaditana CC... [more]
gi|299471956|emb|CBN79635.1|3.348e-4261.29conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210531625|dbj|GAX09981.1|1.814e-3956.91hypothetical protein FisN_11Lh028 [Fistulifera sol... [more]
gi|1210526861|dbj|GAX14509.1|2.558e-3956.91hypothetical protein FisN_11Hh028 [Fistulifera sol... [more]
gi|219109904|ref|XP_002176705.1|3.996e-3759.52predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|223995981|ref|XP_002287664.1|1.938e-3657.25predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1072236578|gb|OEU21306.1|3.761e-3656.00HSP20-like chaperone [Fragilariopsis cylindrus CCM... [more]
gi|1173957166|gb|OQS03760.1|7.879e-3644.68hypothetical protein THRCLA_03944 [Thraustotheca c... [more]
gi|953486346|emb|CEG49677.1|4.882e-3543.98HSP90 co-chaperone p23 [Plasmopara halstedii][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1168rna1168Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications