EWM29551.1, cds1148 (CDS) Nannochloropsis gaditana

Overview
NameEWM29551.1
Unique Namecds1148
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1311164..1311339 +
Alignment locationCM002456.1:1311581..1313705 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29551.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g18.8640.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1311164..1311339 +
CM002456.1supercontigCM002456.1:1311581..1313705 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana])

HSP 1 Score: 1601.65 bits (4146), Expect = 0.000e+0
Identity = 766/766 (100.00%), Postives = 766/766 (100.00%), Query Frame = 0
Query:    1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEKVLGLTPSILGASGLSRIEPEGAAQGGCQSHVSGLDVGHGAGDLSTAKLRGGLRGGEHGIRAEGRGARKQGRREADRGESMAGGGKAANQKGAASKRSTAQSRGGRHGCGRGSTDATAGGEGSHEDREPFNQRSYTRPFADGQMPARASQAYVLPSSTSFAVGDAQRQVHSLSQQRQPGQLQMGVGSSWQSMAWPRTTSTGERSRDKEGGEKNQGGEGRRDELQGATGELDPAGGRQGVREYLYAQDTHGSTAFDPAGTISPPVPMHPLSLVSRPLQDQQYLYRHPQHRHQWQPQQQQQQQQQHQGQAHKAKRNTCCSNKNKGNQIISNNSHCCNTTTSSNNCNYSNSNMSSDTSSSSSTTIATIKSNYRSTIVSNKLRAYGNHVIIIIIHNHDNPDNNNNNSHNNNNNHNNNNDKKFISRTDNTMGLIRVGIRTKVMPEQEQDKDATRRRKKNRLRIPRSWGVSRATTWPRFVGLRPI 766
            MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEKVLGLTPSILGASGLSRIEPEGAAQGGCQSHVSGLDVGHGAGDLSTAKLRGGLRGGEHGIRAEGRGARKQGRREADRGESMAGGGKAANQKGAASKRSTAQSRGGRHGCGRGSTDATAGGEGSHEDREPFNQRSYTRPFADGQMPARASQAYVLPSSTSFAVGDAQRQVHSLSQQRQPGQLQMGVGSSWQSMAWPRTTSTGERSRDKEGGEKNQGGEGRRDELQGATGELDPAGGRQGVREYLYAQDTHGSTAFDPAGTISPPVPMHPLSLVSRPLQDQQYLYRHPQHRHQWQPQQQQQQQQQHQGQAHKAKRNTCCSNKNKGNQIISNNSHCCNTTTSSNNCNYSNSNMSSDTSSSSSTTIATIKSNYRSTIVSNKLRAYGNHVIIIIIHNHDNPDNNNNNSHNNNNNHNNNNDKKFISRTDNTMGLIRVGIRTKVMPEQEQDKDATRRRKKNRLRIPRSWGVSRATTWPRFVGLRPI
Sbjct:    1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEKVLGLTPSILGASGLSRIEPEGAAQGGCQSHVSGLDVGHGAGDLSTAKLRGGLRGGEHGIRAEGRGARKQGRREADRGESMAGGGKAANQKGAASKRSTAQSRGGRHGCGRGSTDATAGGEGSHEDREPFNQRSYTRPFADGQMPARASQAYVLPSSTSFAVGDAQRQVHSLSQQRQPGQLQMGVGSSWQSMAWPRTTSTGERSRDKEGGEKNQGGEGRRDELQGATGELDPAGGRQGVREYLYAQDTHGSTAFDPAGTISPPVPMHPLSLVSRPLQDQQYLYRHPQHRHQWQPQQQQQQQQQHQGQAHKAKRNTCCSNKNKGNQIISNNSHCCNTTTSSNNCNYSNSNMSSDTSSSSSTTIATIKSNYRSTIVSNKLRAYGNHVIIIIIHNHDNPDNNNNNSHNNNNNHNNNNDKKFISRTDNTMGLIRVGIRTKVMPEQEQDKDATRRRKKNRLRIPRSWGVSRATTWPRFVGLRPI 766          
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0
Identity = 287/288 (99.65%), Postives = 288/288 (100.00%), Query Frame = 0
Query:    1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEK 288
            MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLA+TTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEK
Sbjct:    1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLASTTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEK 288          
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana])

HSP 1 Score: 187.963 bits (476), Expect = 5.489e-46
Identity = 99/259 (38.22%), Postives = 139/259 (53.67%), Query Frame = 0
Query:    6 DGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIE-----------EKLSPHHMPEYVLRLCMESRKEG--AAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFL 251
            DGGPP WAL+  LQ  PGL    HC+  A  F     R+   GRLQH K   ILR WD Y ++   D++CGA   + R+LA                E++    ++P+E           + L   HMP YV  L     ++G  +AV GY Y +G ++LWT   FA+++ TA+  N+ F Q  +LPC+L+G    P DRP FY  L+EY+L    E R + + A+V+  DG     LV+AR+ V+N+GQY  FA+SFL
Sbjct:  578 DGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLAL-RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSL-----QDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFL 830          
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana])

HSP 1 Score: 164.466 bits (415), Expect = 1.570e-38
Identity = 85/249 (34.14%), Postives = 134/249 (53.82%), Query Frame = 0
Query:   12 WALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAV-CGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASAS 259
            W L GEL    GL++  HC LAA  F  +  +L+  G+LQH K   I+R W+  C   K D TCG    L R+LASP P GV    Q  ++ ++S++    I++ + P +MP  V  L    R+E  ++ CG+ + +G F++WT+  F+ +Y +  + N       +LP + +G +F P  R  FYE + E++L    E    +MV+E +  DG     LV  R+ ++N GQ   FAM+  PL  ++A+
Sbjct:   18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLW-LLSIDKLMEPKNMPATVRSL----REEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAA 261          
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana])

HSP 1 Score: 133.265 bits (334), Expect = 1.604e-28
Identity = 78/230 (33.91%), Postives = 114/230 (49.57%), Query Frame = 0
Query:   33 AATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGA-------LLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGA--AVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253
            A  TF  +  RL+ +G LQH +   I+  WD      + DV+CGA       L  L    ASP+   VP+ +  S+          P  E L   H+P +V  L      EGA  A CG+ Y  G F++WTD  F+ +Y+ A EAN    Q  VLPCYL+GC+ H   +  F++ L  ++L    E + ++MVA+ L  D      L++ R+ V N G Y   A++ LP+
Sbjct:   68 AVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQ-VPVRFGTSVACC-------PAGELLEGVHVPAFVAEL-----DEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI 284          
The following BLAST results are available for this feature:
BLAST of EWM29551.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585112121|gb|EWM29550.1|0.000e+0100.00hypothetical protein Naga_100006g18 [Nannochlorops... [more]
gi|553178084|ref|XP_005852521.1|0.000e+099.65hypothetical protein NGA_0534002 [Nannochloropsis ... [more]
gi|585110393|gb|EWM28051.1|5.489e-4638.22fungal specific transcription [Nannochloropsis gad... [more]
gi|585107465|gb|EWM25637.1|1.570e-3834.14hypothetical protein Naga_100037g11 [Nannochlorops... [more]
gi|585112110|gb|EWM29539.1|1.604e-2833.91hypothetical protein Naga_100006g24 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1149rna1149Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications