EWM29551.1, cds1148 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585112121|gb|EWM29550.1| (hypothetical protein Naga_100006g18 [Nannochloropsis gaditana] >gi|585112122|gb|EWM29551.1| hypothetical protein Naga_100006g18 [Nannochloropsis gaditana]) HSP 1 Score: 1601.65 bits (4146), Expect = 0.000e+0 Identity = 766/766 (100.00%), Postives = 766/766 (100.00%), Query Frame = 0
Query: 1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEKVLGLTPSILGASGLSRIEPEGAAQGGCQSHVSGLDVGHGAGDLSTAKLRGGLRGGEHGIRAEGRGARKQGRREADRGESMAGGGKAANQKGAASKRSTAQSRGGRHGCGRGSTDATAGGEGSHEDREPFNQRSYTRPFADGQMPARASQAYVLPSSTSFAVGDAQRQVHSLSQQRQPGQLQMGVGSSWQSMAWPRTTSTGERSRDKEGGEKNQGGEGRRDELQGATGELDPAGGRQGVREYLYAQDTHGSTAFDPAGTISPPVPMHPLSLVSRPLQDQQYLYRHPQHRHQWQPQQQQQQQQQHQGQAHKAKRNTCCSNKNKGNQIISNNSHCCNTTTSSNNCNYSNSNMSSDTSSSSSTTIATIKSNYRSTIVSNKLRAYGNHVIIIIIHNHDNPDNNNNNSHNNNNNHNNNNDKKFISRTDNTMGLIRVGIRTKVMPEQEQDKDATRRRKKNRLRIPRSWGVSRATTWPRFVGLRPI 766
MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEKVLGLTPSILGASGLSRIEPEGAAQGGCQSHVSGLDVGHGAGDLSTAKLRGGLRGGEHGIRAEGRGARKQGRREADRGESMAGGGKAANQKGAASKRSTAQSRGGRHGCGRGSTDATAGGEGSHEDREPFNQRSYTRPFADGQMPARASQAYVLPSSTSFAVGDAQRQVHSLSQQRQPGQLQMGVGSSWQSMAWPRTTSTGERSRDKEGGEKNQGGEGRRDELQGATGELDPAGGRQGVREYLYAQDTHGSTAFDPAGTISPPVPMHPLSLVSRPLQDQQYLYRHPQHRHQWQPQQQQQQQQQHQGQAHKAKRNTCCSNKNKGNQIISNNSHCCNTTTSSNNCNYSNSNMSSDTSSSSSTTIATIKSNYRSTIVSNKLRAYGNHVIIIIIHNHDNPDNNNNNSHNNNNNHNNNNDKKFISRTDNTMGLIRVGIRTKVMPEQEQDKDATRRRKKNRLRIPRSWGVSRATTWPRFVGLRPI
Sbjct: 1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEKVLGLTPSILGASGLSRIEPEGAAQGGCQSHVSGLDVGHGAGDLSTAKLRGGLRGGEHGIRAEGRGARKQGRREADRGESMAGGGKAANQKGAASKRSTAQSRGGRHGCGRGSTDATAGGEGSHEDREPFNQRSYTRPFADGQMPARASQAYVLPSSTSFAVGDAQRQVHSLSQQRQPGQLQMGVGSSWQSMAWPRTTSTGERSRDKEGGEKNQGGEGRRDELQGATGELDPAGGRQGVREYLYAQDTHGSTAFDPAGTISPPVPMHPLSLVSRPLQDQQYLYRHPQHRHQWQPQQQQQQQQQHQGQAHKAKRNTCCSNKNKGNQIISNNSHCCNTTTSSNNCNYSNSNMSSDTSSSSSTTIATIKSNYRSTIVSNKLRAYGNHVIIIIIHNHDNPDNNNNNSHNNNNNHNNNNDKKFISRTDNTMGLIRVGIRTKVMPEQEQDKDATRRRKKNRLRIPRSWGVSRATTWPRFVGLRPI 766
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|553178084|ref|XP_005852521.1| (hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526] >gi|422296012|gb|EKU23311.1| hypothetical protein NGA_0534002 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 613.994 bits (1582), Expect = 0.000e+0 Identity = 287/288 (99.65%), Postives = 288/288 (100.00%), Query Frame = 0
Query: 1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEK 288
MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLA+TTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEK
Sbjct: 1 MNAVRDGGPPGWALVGELQSAPGLDRLSHCRLASTTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASASSYTVHHLRKCSAWHAERLDLPDLENEGEK 288
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585110393|gb|EWM28051.1| (fungal specific transcription [Nannochloropsis gaditana]) HSP 1 Score: 187.963 bits (476), Expect = 5.489e-46 Identity = 99/259 (38.22%), Postives = 139/259 (53.67%), Query Frame = 0
Query: 6 DGGPPGWALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIE-----------EKLSPHHMPEYVLRLCMESRKEG--AAVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFL 251
DGGPP WAL+ LQ PGL HC+ A F R+ GRLQH K ILR WD Y ++ D++CGA + R+LA E++ ++P+E + L HMP YV L ++G +AV GY Y +G ++LWT FA+++ TA+ N+ F Q +LPC+L+G P DRP FY L+EY+L E R + + A+V+ DG LV+AR+ V+N+GQY FA+SFL
Sbjct: 578 DGGPPSWALMAVLQPPPGLRYYDHCKTTAPLFGETVLRMIDTGRLQHLKTLAILRTWDFYNHKHGIDISCGASAAIVRVLAL-RKSAAYTSGSGESSESVGTNAEQPVEWNDDLLAMDRQDALDQAHMPSYVSSL-----QDGGDSAVGGYVYCSGQYRLWTGKRFADRFMTASTVNSLFDQTKILPCFLFGSFLAPNDRPNFYRSLIEYMLGPTREGREMTVTADVMELDGHVFKALVRARYMVLNEGQYSCFALSFL 830
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585107465|gb|EWM25637.1| (hypothetical protein Naga_100037g11 [Nannochloropsis gaditana] >gi|585107466|gb|EWM25638.1| hypothetical protein Naga_100037g11 [Nannochloropsis gaditana]) HSP 1 Score: 164.466 bits (415), Expect = 1.570e-38 Identity = 85/249 (34.14%), Postives = 134/249 (53.82%), Query Frame = 0
Query: 12 WALVGELQSAPGLDRLSHCRLAATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGALLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGAAV-CGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPLANASAS 259
W L GEL GL++ HC LAA F + +L+ G+LQH K I+R W+ C K D TCG L R+LASP P GV Q ++ ++S++ I++ + P +MP V L R+E ++ CG+ + +G F++WT+ F+ +Y + + N +LP + +G +F P R FYE + E++L E +MV+E + DG LV R+ ++N GQ FAM+ PL ++A+
Sbjct: 18 WTLAGELGVPSGLEQYDHCALAARKFAQVAAQLKAVGKLQHDKALAIIRTWERCCELNKVDATCGVTNLLLRVLASPTPSGVDCIPQVQMRTDLSLW-LLSIDKLMEPKNMPATVRSL----REEAVSMSCGFVHAHGTFRVWTNDRFSAEYMSTEKVNNWLADTGLLPFFCFGTIFSPASRDNFYEYVAEHMLADSSEGHTTSMVSETVGRDGRLMKRLVTIRYEILNGGQNSYFAMNLRPLEYSNAA 261
BLAST of EWM29551.1 vs. NCBI_GenBank
Match: gi|585112110|gb|EWM29539.1| (hypothetical protein Naga_100006g24 [Nannochloropsis gaditana]) HSP 1 Score: 133.265 bits (334), Expect = 1.604e-28 Identity = 78/230 (33.91%), Postives = 114/230 (49.57%), Query Frame = 0
Query: 33 AATTFTYIGYRLRKAGRLQHYKLQGILRAWDVYCYRTKTDVTCGA-------LLGLYRILASPIPHGVPICYQASLQENISMYDDRPIEEKLSPHHMPEYVLRLCMESRKEGA--AVCGYTYVNGHFQLWTDTLFAEKYYTATEANARFTQFAVLPCYLYGCLFHPRDRPCFYELLVEYLLTKGDERRRLAMVAEVLRNDGTSEACLVQARHTVMNDGQYLAFAMSFLPL 253
A TF + RL+ +G LQH + I+ WD + DV+CGA L L ASP+ VP+ + S+ P E L H+P +V L EGA A CG+ Y G F++WTD F+ +Y+ A EAN Q VLPCYL+GC+ H + F++ L ++L E + ++MVA+ L D L++ R+ V N G Y A++ LP+
Sbjct: 68 AVLTFGRVTARLKTSGELQHERALAIIHTWDTTSRAQRVDVSCGAANLILRALASLNSTYASPVLQ-VPVRFGTSVACC-------PAGELLEGVHVPAFVAEL-----DEGATSASCGFIYTGGEFRIWTDLNFSARYFDAEEANVYHIQAGVLPCYLFGCIIHRTYQEQFFDRLAVHMLKDNTEEKTMSMVAQTLGRDQVVTQNLLRIRYVVRNSGHYACLALNVLPI 284 The following BLAST results are available for this feature:
BLAST of EWM29551.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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