EWM29529.1, cds1132 (CDS) Nannochloropsis gaditana

Overview
NameEWM29529.1
Unique Namecds1132
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1270327..1270510 -
Alignment locationCM002456.1:1268533..1270243 -
Alignment locationCM002456.1:1268382..1268476 -
Alignment locationCM002456.1:1268251..1268336 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29529.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100006g33.8618.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1270327..1270510 -
CM002456.1supercontigCM002456.1:1268533..1270243 -
CM002456.1supercontigCM002456.1:1268382..1268476 -
CM002456.1supercontigCM002456.1:1268251..1268336 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|585112100|gb|EWM29529.1| (hypothetical protein Naga_100006g33 [Nannochloropsis gaditana])

HSP 1 Score: 1418.68 bits (3671), Expect = 0.000e+0
Identity = 691/691 (100.00%), Postives = 691/691 (100.00%), Query Frame = 0
Query:    1 MQEATGAHLEEPELQDNHNNLNSVGHFLGHDGDGSAIKTQGVRTRGSSYMLRERSTPSYLHASRQEGVEGVGACGDQADGQGVSDRQTRSRSRQKPASFAVHGTHAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAKCHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDNEGGNGKDEGGGRSAAREVRGEKGDMGSLQYSSACVSNTAVHGQSGGEGVWTATRPEAHSHLIQEETGVAKGQGDGMSAWDDVSGEEGAQIVESGEDEVKNVEDMMFRRREACMQEDFDTDSFFSSEARDGTAVDGSGERDSEASTVLYFGGVSRETLFRPSCACASVLSPSSAILADSPPPGSPSLEQTDEFFPSESFAHWHTSVREAIMLARVGSLGGKNEVNYHTMHRNIFPYAFAIHRYCVHTRLNRRLMLIFGQRMQKPCNLVMHFNWNA 691
            MQEATGAHLEEPELQDNHNNLNSVGHFLGHDGDGSAIKTQGVRTRGSSYMLRERSTPSYLHASRQEGVEGVGACGDQADGQGVSDRQTRSRSRQKPASFAVHGTHAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAKCHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDNEGGNGKDEGGGRSAAREVRGEKGDMGSLQYSSACVSNTAVHGQSGGEGVWTATRPEAHSHLIQEETGVAKGQGDGMSAWDDVSGEEGAQIVESGEDEVKNVEDMMFRRREACMQEDFDTDSFFSSEARDGTAVDGSGERDSEASTVLYFGGVSRETLFRPSCACASVLSPSSAILADSPPPGSPSLEQTDEFFPSESFAHWHTSVREAIMLARVGSLGGKNEVNYHTMHRNIFPYAFAIHRYCVHTRLNRRLMLIFGQRMQKPCNLVMHFNWNA
Sbjct:    1 MQEATGAHLEEPELQDNHNNLNSVGHFLGHDGDGSAIKTQGVRTRGSSYMLRERSTPSYLHASRQEGVEGVGACGDQADGQGVSDRQTRSRSRQKPASFAVHGTHAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAKCHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDNEGGNGKDEGGGRSAAREVRGEKGDMGSLQYSSACVSNTAVHGQSGGEGVWTATRPEAHSHLIQEETGVAKGQGDGMSAWDDVSGEEGAQIVESGEDEVKNVEDMMFRRREACMQEDFDTDSFFSSEARDGTAVDGSGERDSEASTVLYFGGVSRETLFRPSCACASVLSPSSAILADSPPPGSPSLEQTDEFFPSESFAHWHTSVREAIMLARVGSLGGKNEVNYHTMHRNIFPYAFAIHRYCVHTRLNRRLMLIFGQRMQKPCNLVMHFNWNA 691          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|585112943|gb|EWM30284.1| (hypothetical protein Naga_100003g26 [Nannochloropsis gaditana])

HSP 1 Score: 370.548 bits (950), Expect = 9.603e-116
Identity = 235/558 (42.11%), Postives = 295/558 (52.87%), Query Frame = 0
Query:   49 YMLRERSTPSYLHASRQEGVEGVGACGDQADGQGVSDRQTRSRSRQKPASFAVHGT--------HAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQSRREVEQGLHPVTCMHVDSMHSIQCMEPALMSAGLPFFCPTHLILARCGGSVDCRGNSYVRGRCVRHAGGDSSGAECQQPGCTRDALGGEGHGFCEKHRDLGFFCTHTFCVARAK--CHGGKCDMHRLMESDMKEAAMIVEGSGPREGDDQVAPGPDN-----EGGNGKDEGGGRSAAREVRGEKG--DMGSLQYSSACVSNTAVHGQSGGEGVWTATRPEAHSHLIQEETGVAKGQGDGMSAWDDVSGEEG-AQIVES--GEDEVK--NVEDMMFRRREACMQEDFDTDSFFSSEARDGTAVDGSGERDSEASTVLYFGGVSRETLFRPSCACASV 584
            Y LRER TPSYL A            GD AD     +   R   R KP ++  H            +V ++ S G    G   +  V  R G C   GC +KSRGST RCRRHGGG  C +PGCTGFSRL+GKCSVHGGAQMCIV  CDKRARF+GRCTRHGGFVNCR +GC LRAVTKGVCAKHGG+  CRHPGC R  +KS+  WCQ HGR+ D FR    REVE+GL  V C HVD     +C+E AL S GLP +CP HLILA CG  + C+   + +GRC RH    + G E Q+P C+  A+G +  G  EK +       H+ C +  K     G C +H    ++M+  A +VEG  P  G  Q     D+     EGG G  E   R +    R ++     G+   S   VS+          GVW A  PE  + L+ EE  V +G  D     +D+    G ++  ES  G+ E+K   V   +    +   +E FD +SFF SE+R    V    E   EA++ LYFGG+SR T     C   S 
Sbjct:  103 YRLRERRTPSYLLAYSHSD-------GDDAD----HEVGGRPGERLKPCAWIDHRLPNNHTSRLQTLVGDDVSGGVGQNGDRPKRNVSKRGGTCTANGCMKKSRGSTGRCRRHGGGVNCKIPGCTGFSRLDGKCSVHGGAQMCIVPECDKRARFFGRCTRHGGFVNCRMEGCELRAVTKGVCAKHGGKSACRHPGCMRSGLKSRHGWCQGHGRIFDHFRLHHAREVERGLQQVACTHVDPRRGSRCVETALTSRGLPLYCPAHLILAHCGAGIGCKAPCHAKGRCARHLREGADGTESQRPVCSSTAVGEDREGLSEKFQGWITINNHSSCASCVKYPVAAGGCSIHPQTAAEMEGVANLVEGEEPAAGQSQALWQHDDQAGVKEGGQGALE---RISLETPRAQESGPSTGTFAGSPMPVSDLL------STGVWAAPEPEGLACLVLEEHVVTEGM-DSREWCEDMDHRNGRSERAESDTGDAELKGGRVRGYVAANGDLVKREHFDAESFFFSESRHAQVVGAKDEERLEATSSLYFGGISRCTPLYAPCPSTST 639          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|635365737|emb|CCI45906.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 100.138 bits (248), Expect = 3.157e-20
Identity = 60/143 (41.96%), Postives = 74/143 (51.75%), Query Frame = 0
Query:  121 SLEESTVGSRRGN------CEVEGCGRK--SRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRML 255
            S  ES   SR G       C V GC R   SRG    C RHGGG  C V GCT  +++ G+C  HGG+  CI++GC KR +  G C  HGG   C+   C   AV+ G C  HGG   C    C RPA +  +N+CQ H  +L
Sbjct:   80 STTESNTESRYGRKRHARRCSVVGCNRYKISRG---HCFRHGGGTPCEVVGCTSSAKIRGRCWRHGGSSACIIVGCTKRGKSRGLCWSHGGGTKCKTAECSKVAVSNGFCWAHGGGKRCLFETCKRPAYQRTQNYCQTHYELL 219          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|325183781|emb|CCA18240.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 99.3673 bits (246), Expect = 7.977e-20
Identity = 56/130 (43.08%), Postives = 71/130 (54.62%), Query Frame = 0
Query:  134 CEVEGCGRK--SRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSFRQQ 261
            C V GC R   SRG    C RHGGG  C V GCT  +++ G+C  HGG+  CI+ GC KR +  G C  HGG   C+   C   AV+ G C  HGG   CR   C RPA +  +N+CQ H   L + ++Q
Sbjct:   98 CSVIGCNRYKISRG---HCFRHGGGTPCEVAGCTSSAKIRGRCWRHGGSSACIIAGCTKRGKSRGLCWSHGGGTKCKTIECGKVAVSNGFCWAHGGGKRCRFQTCKRPAYQRTQNYCQTHYESLYTPQEQ 224          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|695459228|ref|XP_009537672.1| (hypothetical protein PHYSODRAFT_565788 [Phytophthora sojae] >gi|348667082|gb|EGZ06908.1| hypothetical protein PHYSODRAFT_565788 [Phytophthora sojae])

HSP 1 Score: 93.9745 bits (232), Expect = 2.031e-18
Identity = 64/163 (39.26%), Postives = 79/163 (48.47%), Query Frame = 0
Query:   96 PASFAVHGTHAVVDEEHSSGSIDMGSLEESTVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRMLDSF 258
            P    V    A V    SSGS    S EE     RR  C+ EGC R        C RHGGG  CT+ GC+  ++  G C  HGG+  C   GCDK+A+  GRC  HGG   CR   C   AV+ G C  HGG   C + GC +PA +   N C++H   L + 
Sbjct:   33 PFILNVPAAAASVGAISSSGSATQLSKEEK---KRRRTCKHEGC-RNYIVHKGLCCRHGGGKKCTLEGCSTSAKHRGLCWKHGGSVKCREHGCDKKAKARGRCWAHGGGTKCRNSECSKVAVSGGYCWAHGGGKRCGYDGCVKPAYERTGNLCEMHFEQLSTV 191          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|673025916|ref|XP_008866919.1| (hypothetical protein H310_04370 [Aphanomyces invadans] >gi|574476966|gb|ETW03963.1| hypothetical protein H310_04370 [Aphanomyces invadans])

HSP 1 Score: 92.4337 bits (228), Expect = 6.576e-18
Identity = 53/129 (41.09%), Postives = 68/129 (52.71%), Query Frame = 0
Query:  126 TVGSRRGNCEVEGCGRKSRGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVHGRM 254
            T  + R  C V+GC   +  S  RC RHGGG  C+V GCT  ++   +C +HGG  +C + GC  +A+ YGRC  HGG V C    C   A   G+C  HGG   CR  GC R A K Q  +C  H  +
Sbjct:   62 TSTTHRNKCNVDGCATAAV-SKGRCVRHGGGTRCSVAGCTKRTKRFNRCYLHGGFVLCCIEGCTSKAKRYGRCWAHGGGVQCTEVECTKLAAKGGLCWSHGGGHRCRASGCERRAYKRQHFYCDEHADL 189          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|695459187|ref|XP_009537659.1| (hypothetical protein PHYSODRAFT_341067 [Phytophthora sojae] >gi|348667069|gb|EGZ06895.1| hypothetical protein PHYSODRAFT_341067 [Phytophthora sojae])

HSP 1 Score: 93.5893 bits (231), Expect = 1.044e-17
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 0
Query:  133 NCEVEGCGRKS--RGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVH 251
            +C VEGC   +  RG    C RHGGG  C+ PGCT  ++  G C  HGG+ +C V GC + A+  G C  HGG   C   GC    ++KG+C  HGG   C   GC RPA +S++N+C  H
Sbjct:  111 SCCVEGCTNYTIDRG---LCFRHGGGKSCSKPGCTASAKHRGLCWKHGGSTLCTVEGCTRGAKSRGLCWSHGGGTKCSVAGCQKTTISKGLCWTHGGGKRCAFEGCKRPASQSKQNFCSKH 228          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|1214676078|gb|OWY97461.1| (hypothetical protein PHMEG_00031998 [Phytophthora megakarya])

HSP 1 Score: 92.4337 bits (228), Expect = 1.340e-17
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 0
Query:  133 NCEVEGCGRKS--RGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVH 251
            +C +EGC   +  RG    C RHGGG  C++PGCT  ++  G C  HGG+ +C V GC + A+  G C  HGG   C    C    ++KG+C  HGG+  C   GC RPA +S++N+C  H
Sbjct:   94 SCSIEGCSNYTIDRG---LCFRHGGGKSCSMPGCTASAKHRGLCWKHGGSTLCTVEGCTRGAKSRGLCWSHGGGTKCSVANCQKTTISKGLCWTHGGKR-CGFDGCKRPASQSKQNYCSKH 210          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|567963152|gb|ETK88657.1| (hypothetical protein L915_07124 [Phytophthora parasitica] >gi|570987842|gb|ETP46441.1| hypothetical protein F442_07318 [Phytophthora parasitica P10297])

HSP 1 Score: 92.4337 bits (228), Expect = 1.604e-17
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  133 NCEVEGCGRKS--RGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVH 251
             C VEGC   +  RG    C RHGGG  C++PGCT  ++  G C  HGG+ +C V GC + A+  G C  HGG   C    C    ++KG+C  HGG   C   GC RPA +S++N+C  H
Sbjct:   96 QCCVEGCTNYTIDRG---LCFRHGGGKSCSMPGCTASAKHRGLCWKHGGSTLCTVEGCTRGAKSRGLCWSHGGGTKCSVTNCQKTTISKGLCWTHGGGKRCAFDGCKRPASQSKQNFCTKH 213          
BLAST of EWM29529.1 vs. NCBI_GenBank
Match: gi|970645968|gb|KUF86282.1| (hypothetical protein AM588_10001112 [Phytophthora nicotianae])

HSP 1 Score: 91.6633 bits (226), Expect = 1.793e-17
Identity = 51/121 (42.15%), Postives = 67/121 (55.37%), Query Frame = 0
Query:  133 NCEVEGCGRKS--RGSTRRCRRHGGGAMCTVPGCTGFSRLEGKCSVHGGAQMCIVMGCDKRARFYGRCTRHGGFVNCRFQGCLLRAVTKGVCAKHGGRDPCRHPGCARPAIKSQENWCQVH 251
             C VEGC   +  RG    C RHGGG  C++PGCT  ++  G C  HGG+ +C V GC + A+  G C  HGG   C    C    ++KG+C  HGG   C   GC RPA +S++N+C  H
Sbjct:   73 QCCVEGCTNYTIDRG---LCFRHGGGKSCSMPGCTASAKHRGLCWKHGGSTLCTVEGCTRGAKSRGLCWSHGGGTKCSVTNCQKTTISKGLCWTHGGGKRCAFDGCKRPASQSKQNFCTKH 190          
The following BLAST results are available for this feature:
BLAST of EWM29529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112100|gb|EWM29529.1|0.000e+0100.00hypothetical protein Naga_100006g33 [Nannochlorops... [more]
gi|585112943|gb|EWM30284.1|9.603e-11642.11hypothetical protein Naga_100003g26 [Nannochlorops... [more]
gi|635365737|emb|CCI45906.1|3.157e-2041.96unnamed protein product [Albugo candida][more]
gi|325183781|emb|CCA18240.1|7.977e-2043.08conserved hypothetical protein [Albugo laibachii N... [more]
gi|695459228|ref|XP_009537672.1|2.031e-1839.26hypothetical protein PHYSODRAFT_565788 [Phytophtho... [more]
gi|673025916|ref|XP_008866919.1|6.576e-1841.09hypothetical protein H310_04370 [Aphanomyces invad... [more]
gi|695459187|ref|XP_009537659.1|1.044e-1742.98hypothetical protein PHYSODRAFT_341067 [Phytophtho... [more]
gi|1214676078|gb|OWY97461.1|1.340e-1741.32hypothetical protein PHMEG_00031998 [Phytophthora ... [more]
gi|567963152|gb|ETK88657.1|1.604e-1742.15hypothetical protein L915_07124 [Phytophthora para... [more]
gi|970645968|gb|KUF86282.1|1.793e-1742.15hypothetical protein AM588_10001112 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1133rna1133Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications