EWM29561.1, cds1131 (CDS) Nannochloropsis gaditana

Overview
NameEWM29561.1
Unique Namecds1131
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1268030..1268211 -
Alignment locationCM002456.1:1267808..1267830 -
Alignment locationCM002456.1:1267236..1267376 -
Alignment locationCM002456.1:1266665..1266938 -
Alignment locationCM002456.1:1266525..1266609 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29561.1
Productglutaredoxin
Orig transcript idgnl|cribi|Naga_100006g34.8650.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1268030..1268211 -
CM002456.1supercontigCM002456.1:1267808..1267830 -
CM002456.1supercontigCM002456.1:1267236..1267376 -
CM002456.1supercontigCM002456.1:1266665..1266938 -
CM002456.1supercontigCM002456.1:1266525..1266609 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0019725cellular homeostasis
GO:0045454cell redox homeostasis
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR012336Thioredoxin-like_fold
IPR002109Glutaredoxin
IPR011899Glutaredoxin_euk/vir
IPR014025Glutaredoxin_subgr
Homology
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|585112132|gb|EWM29561.1| (glutaredoxin [Nannochloropsis gaditana])

HSP 1 Score: 491.5 bits (1264), Expect = 6.191e-176
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MPQRTRRFSSRMQDFLMRLDGMLGKESSAKRSMMGCFLHILTQQQNEKFKHWRTTQNLGQDLQYFTLTANSRFTPGHICSNTIELHWPPCMGNLLGGTAVAATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALKHDMEKRAFNSLNPCPVICHTLLLVPFS 234
            MPQRTRRFSSRMQDFLMRLDGMLGKESSAKRSMMGCFLHILTQQQNEKFKHWRTTQNLGQDLQYFTLTANSRFTPGHICSNTIELHWPPCMGNLLGGTAVAATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALKHDMEKRAFNSLNPCPVICHTLLLVPFS
Sbjct:    1 MPQRTRRFSSRMQDFLMRLDGMLGKESSAKRSMMGCFLHILTQQQNEKFKHWRTTQNLGQDLQYFTLTANSRFTPGHICSNTIELHWPPCMGNLLGGTAVAATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALKHDMEKRAFNSLNPCPVICHTLLLVPFS 234          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|1072990032|ref|XP_018445734.1| (PREDICTED: glutaredoxin-C4-like [Raphanus sativus])

HSP 1 Score: 117.087 bits (292), Expect = 9.842e-30
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 0
Query:  100 VAATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALKHDM 210
            V+A+ EA +FVK T+ +HK+V+FSK+YCP+   AK        V HVVELD+R DGG IQ+AL E+ GRRTVP VF+ GK IGG DDTV    +G++ ++L   G  + ++
Sbjct:   23 VSASPEA-EFVKKTISSHKIVIFSKSYCPYCRRAKSVFSELNQVPHVVELDEREDGGSIQSALGEIVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLLGVSGNTRAEL 132          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|703122235|ref|XP_010102526.1| (hypothetical protein L484_014582 [Morus notabilis] >gi|587905428|gb|EXB93590.1| hypothetical protein L484_014582 [Morus notabilis])

HSP 1 Score: 116.701 bits (291), Expect = 1.085e-29
Identity = 55/104 (52.88%), Postives = 75/104 (72.12%), Query Frame = 0
Query:  106 AMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGALKHD 209
            A++ VK  + +H VVVFSKTYC + +  K  L   GA F V+ELD+ SDGGD+QAALAE TGRRTVPNVF+ GK+IGG D  + L ++G++  +L+  GA+ +D
Sbjct:   18 ALNKVKQIVSSHPVVVFSKTYCGYCTRVKNLLTQLGAAFKVIELDEESDGGDMQAALAEWTGRRTVPNVFIAGKNIGGCDSVLELHQSGQLLPLLTNAGAIAND 121          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|698799696|ref|XP_009832877.1| (glutaredoxin [Aphanomyces astaci] >gi|574112274|gb|ETV77767.1| glutaredoxin [Aphanomyces astaci])

HSP 1 Score: 115.931 bits (289), Expect = 1.387e-29
Identity = 59/106 (55.66%), Postives = 72/106 (67.92%), Query Frame = 0
Query:  104 AEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSD---GGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206
            A  + FVK  +  H VVVFSKT CP+  MAK  L+S GA FHVVEL++  D   G D+Q A  ++TG+RTVPNVF+ G SIGGG DT AL R+GK+  ML   GAL
Sbjct:    2 ATGLQFVKNAIAQHAVVVFSKTTCPYCVMAKEVLKSTGATFHVVELNRMGDEPTGDDVQNACFQLTGQRTVPNVFVSGTSIGGGSDTKALHRSGKLVPMLREAGAL 107          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|669155206|ref|XP_008613165.1| (glutaredoxin 3 [Saprolegnia diclina VS20] >gi|530735283|gb|EQC33525.1| glutaredoxin 3 [Saprolegnia diclina VS20])

HSP 1 Score: 115.546 bits (288), Expect = 1.902e-29
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 0
Query:  105 EAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSD---GGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206
              + FVK+ +  H VVVFSKT CP+  MAK  L S GA FHVVEL+Q  D   G D+Q A  ++TG+RTVPNVF+ GKSIGGG DT AL +AGK+  +L   GAL
Sbjct:    3 SGVQFVKSLISQHGVVVFSKTTCPYCRMAKDVLGSVGARFHVVELNQMGDEPTGDDVQNACFQLTGQRTVPNVFVNGKSIGGGSDTAALQKAGKLVPLLKTAGAL 107          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|813177613|ref|XP_012205276.1| (hypothetical protein SPRG_10650 [Saprolegnia parasitica CBS 223.65] >gi|641529802|gb|KDO23954.1| hypothetical protein SPRG_10650 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 115.161 bits (287), Expect = 2.141e-29
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 0
Query:  105 EAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSD---GGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206
              + FVK+ +  H VVVFSKT CP+  MAK  L S GA FHVVEL+Q  D   G D+Q A  ++TG+RTVPNVF+ GKSIGGG DT AL +AGK+  +L   GAL
Sbjct:    3 SGVQFVKSLISQHGVVVFSKTTCPYCRMAKDVLGSVGARFHVVELNQMGDAPTGDDVQNACFQLTGQRTVPNVFINGKSIGGGSDTAALQKAGKLVPLLKDAGAL 107          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|673037840|ref|XP_008872881.1| (glutaredoxin [Aphanomyces invadans] >gi|574471677|gb|ETV98684.1| glutaredoxin [Aphanomyces invadans])

HSP 1 Score: 115.161 bits (287), Expect = 3.370e-29
Identity = 55/106 (51.89%), Postives = 71/106 (66.98%), Query Frame = 0
Query:  101 AATAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206
             AT EA  FV+  +  + V +FSKTYCP+  MAK+TL S GA F V+EL++R DG  IQ+ L E+TGR TVPNVF++  +IGGG D   L R GK+ +ML   G L
Sbjct:    8 GATPEAAAFVQQAINTNGVTIFSKTYCPYCDMAKKTLTSVGAQFEVIELNKRPDGDAIQSVLEELTGRDTVPNVFIKTTTIGGGTDVAKLHRDGKLVQMLKEAGVL 113          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|685375446|ref|XP_009120800.1| (PREDICTED: glutaredoxin-C4-like [Brassica rapa] >gi|923728608|ref|XP_013667303.1| PREDICTED: glutaredoxin-C4-like [Brassica napus])

HSP 1 Score: 115.161 bits (287), Expect = 4.447e-29
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 0
Query:  108 DFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEML 200
            DFVK T+ +HK+V+FSK+YCP+   AK        V HVVELD+R DGG IQ+AL E+ GRRTVP VF+ GK IGG DDTV    +G++ ++L
Sbjct:   30 DFVKKTISSHKIVIFSKSYCPYCRRAKSVFSELNQVPHVVELDEREDGGSIQSALGEIVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLL 122          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|698798560|ref|XP_009832309.1| (glutaredoxin [Aphanomyces astaci] >gi|574112480|gb|ETV77972.1| glutaredoxin [Aphanomyces astaci])

HSP 1 Score: 114.775 bits (286), Expect = 4.707e-29
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 0
Query:  103 TAEAMDFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEMLSALGAL 206
            T EA  FV+T +  + V VFSKTYCP+   AK  L+S GA F V+ELD+R DG  IQ+AL E+TGR TVPNVF++  +IGGG D   L R GK+ ++L   G L
Sbjct:   10 TPEAAAFVQTAINTNGVTVFSKTYCPYCDQAKTALKSAGATFEVIELDKRPDGDAIQSALGELTGRFTVPNVFVKTTTIGGGSDVAKLHREGKLVQLLKEAGVL 113          
BLAST of EWM29561.1 vs. NCBI_GenBank
Match: gi|674940945|emb|CDX92459.1| (BnaA10g14980D [Brassica napus])

HSP 1 Score: 115.161 bits (287), Expect = 5.205e-29
Identity = 51/93 (54.84%), Postives = 66/93 (70.97%), Query Frame = 0
Query:  108 DFVKTTLRAHKVVVFSKTYCPFASMAKRTLQSEGAVFHVVELDQRSDGGDIQAALAEMTGRRTVPNVFLEGKSIGGGDDTVALARAGKMKEML 200
            DFVK T+ +HK+V+FSK+YCP+   AK        V HVVELD+R DGG IQ+AL E+ GRRTVP VF+ GK IGG DDTV    +G++ ++L
Sbjct:   28 DFVKKTISSHKIVIFSKSYCPYCRRAKSVFSELNQVPHVVELDEREDGGSIQSALGEIVGRRTVPQVFINGKHIGGSDDTVDAHESGELAKLL 120          
The following BLAST results are available for this feature:
BLAST of EWM29561.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112132|gb|EWM29561.1|6.191e-176100.00glutaredoxin [Nannochloropsis gaditana][more]
gi|1072990032|ref|XP_018445734.1|9.842e-3049.55PREDICTED: glutaredoxin-C4-like [Raphanus sativus][more]
gi|703122235|ref|XP_010102526.1|1.085e-2952.88hypothetical protein L484_014582 [Morus notabilis]... [more]
gi|698799696|ref|XP_009832877.1|1.387e-2955.66glutaredoxin [Aphanomyces astaci] >gi|574112274|gb... [more]
gi|669155206|ref|XP_008613165.1|1.902e-2956.19glutaredoxin 3 [Saprolegnia diclina VS20] >gi|5307... [more]
gi|813177613|ref|XP_012205276.1|2.141e-2956.19hypothetical protein SPRG_10650 [Saprolegnia paras... [more]
gi|673037840|ref|XP_008872881.1|3.370e-2951.89glutaredoxin [Aphanomyces invadans] >gi|574471677|... [more]
gi|685375446|ref|XP_009120800.1|4.447e-2954.84PREDICTED: glutaredoxin-C4-like [Brassica rapa] >g... [more]
gi|698798560|ref|XP_009832309.1|4.707e-2952.88glutaredoxin [Aphanomyces astaci] >gi|574112480|gb... [more]
gi|674940945|emb|CDX92459.1|5.205e-2954.84BnaA10g14980D [Brassica napus][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1132rna1132Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications