EWM29546.1, cds1122 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|585112117|gb|EWM29546.1| (myb dna binding protein transcription factor-like protein [Nannochloropsis gaditana]) HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0 Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query: 1 MTTTMESDGGSVMMEDIQENDKQSELKPGIMGVRGSLRSRRREGEEDADSNANNNSNASVNTTIINAGHNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE 256
MTTTMESDGGSVMMEDIQENDKQSELKPGIMGVRGSLRSRRREGEEDADSNANNNSNASVNTTIINAGHNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE
Sbjct: 1 MTTTMESDGGSVMMEDIQENDKQSELKPGIMGVRGSLRSRRREGEEDADSNANNNSNASVNTTIINAGHNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE 256
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|219109824|ref|XP_002176665.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411200|gb|EEC51128.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 145.206 bits (365), Expect = 1.908e-39 Identity = 62/132 (46.97%), Postives = 87/132 (65.91%), Query Frame = 0
Query: 113 EGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMY-PKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEP 243
EG +G GK RW+A ++ EDY++ +M P GPYGYD ++ + PLE + L + P RR TV+E WSP+E+A FEGA+ GK+FY I K + +KST+E I+FYYVWK TSHY+ WK+++ P
Sbjct: 65 EGSTNGVDDGKSRSRWKAHQIVEDYIDFASHMMLLPTSQLGPYGYDTSRRQFPLETVSALAFVASPLRRPTVVERWSPYEIAIFEGAMAQYGKDFYHIHKFIKTKSTQEIIDFYYVWKKTSHYRLWKKTYIP 196
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|298706268|emb|CBJ29293.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 144.821 bits (364), Expect = 8.401e-36 Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 0
Query: 117 SGGGKGKPVE-RWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSF 241
S G KP E RWR RM EDY N+ G +MY V GP+GY+ +G P+ERP TLG++ RR TV+E WSP++VA FEGAI + GK F+++++ + K+ + +EFYY+WK T+HY+QWK F
Sbjct: 385 SKGPSNKPKEMRWRTHRMVEDYTNVCGKIMYGHVRTGPFGYNSVEGRFPMERPTTLGMIKAGMRRPTVIERWSPYDVALFEGAISVHGKVFHKVAEEIEGKTVADVVEFYYMWKKTNHYKQWKSMF 510
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|1210525398|dbj|GAX15741.1| (hypothetical protein FisN_3Lh180 [Fistulifera solaris]) HSP 1 Score: 134.42 bits (337), Expect = 1.222e-35 Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 0
Query: 106 SNKRSKVEGVGSGGGKGK------------PVER--WRAQRMAEDYVNLVGDLMYPKVS-FGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPH 247
+NKRS+ +G G K PVER W+ R+ E+YV+ +LM +S G YGYD +K + PLE + LG L P RR V+E WSP+E+A FE A++ GK F ++ + SK+TKE IEFYY+WK TSHY WK+ + P PH
Sbjct: 17 TNKRSRTQGSDEQGIDQKRMRSDESTDTTTPVERTRWKVHRLTEEYVDFASNLMLTPISELGSYGYDPSKLQFPLEAVSALGYLKSPMRRSLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKKKYIP--PH 171
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|1210525637|dbj|GAX15706.1| (hypothetical protein FisN_3Hh180 [Fistulifera solaris]) HSP 1 Score: 133.265 bits (334), Expect = 4.196e-35 Identity = 68/168 (40.48%), Postives = 95/168 (56.55%), Query Frame = 0
Query: 83 KNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVER--WRAQRMAEDYVNLVGDLMYPKVS-FGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPH 247
K +A + + G T + +++ S K PVER W+ R+ E+YV+ +LM +S FG YGYD K + PLE + LG L P RR V+E WSP+E+A FE A++ GK F ++ + SK+TKE IEFYY+WK TSHY WK+ + P PH
Sbjct: 7 KKAATLEEHDTNKRGRTLGNDEQGIDQKRMKSDESSIDKSTPVERTRWKVHRLTEEYVDFASNLMLTPISEFGSYGYDPNKLQFPLEAVSALGYLKSPLRRPLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKKQYIP--PH 172
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|569366918|gb|ETO09978.1| (hypothetical protein RFI_27398 [Reticulomyxa filosa]) HSP 1 Score: 88.5817 bits (218), Expect = 3.772e-18 Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0
Query: 159 AKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKR 239
A+ + +TL VL+ P R+R+ ++ WS EVA FE A+ GKNFYEISK++ +K K+ IEFYY WK ++HYQ WK+
Sbjct: 6 ARDNVATFEYSTLDVLLSPYRKRSPIDEWSAREVALFESAMCCKGKNFYEISKIIGTKCCKQVIEFYYFWKNSTHYQTWKQ 86
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|224009045|ref|XP_002293481.1| (MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220970881|gb|EED89217.1| MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 79.337 bits (194), Expect = 7.755e-16 Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query: 187 WSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFE 242
WSP+E+ FE A+ L GK F+++ K + +KSTKE +EFYY+WK TSHY++WK +E
Sbjct: 1 WSPYEIVTFEAAMALHGKIFHQVQKWVKTKSTKEIVEFYYIWKKTSHYRRWKSQYE 56
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|857973201|emb|CEP00482.1| (hypothetical protein PBRA_001536 [Plasmodiophora brassicae]) HSP 1 Score: 80.4925 bits (197), Expect = 2.687e-14 Identity = 28/70 (40.00%), Postives = 49/70 (70.00%), Query Frame = 0
Query: 169 NTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWK 238
+T+ L+ P R+R++ E WSP ++A FE + +GK+F+ I+KL+ +K+T++ + YY WK ++HY WK
Sbjct: 171 STIEALLSPLRKRSIWESWSPIQLAIFESGLCTLGKDFHAIAKLIENKTTRDVVNLYYHWKQSAHYHMWK 240
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|873223667|emb|CEM28293.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-14 Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0
Query: 171 LGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWK 238
+L+ R ++ W P EV FEGAI GK+F++I+KL+ +K+TKECI+FYY+WK TS Y+ WK
Sbjct: 321 FDLLISKYRHSHTIDLWGPKEVMIFEGAICRYGKDFHKIAKLVETKTTKECIDFYYLWKKTSRYRHWK 388
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|915147195|ref|XP_013338557.1| (hypothetical protein, conserved [Eimeria maxima] >gi|557243592|emb|CDJ61907.1| hypothetical protein, conserved [Eimeria maxima]) HSP 1 Score: 81.2629 bits (199), Expect = 7.360e-14 Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0
Query: 167 RPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWK 238
R L +L P R + +++ WSP E+A FE +I GKNF +I KL+ +K E IEFYY+WKMT+ Y+ WK
Sbjct: 1096 RLTPLEILTSPLRHKEIIDLWSPKEIAIFEASICKFGKNFNKIEKLIQTKKYNEIIEFYYLWKMTNRYKAWK 1167 The following BLAST results are available for this feature:
BLAST of EWM29546.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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