EWM29546.1, cds1122 (CDS) Nannochloropsis gaditana

Overview
NameEWM29546.1
Unique Namecds1122
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1245031..1245096 +
Alignment locationCM002456.1:1245169..1245873 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29546.1
Productmyb dna binding protein transcription factor-like protein
Orig transcript idgnl|cribi|Naga_100006g44.8635.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1245031..1245096 +
CM002456.1supercontigCM002456.1:1245169..1245873 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeodomain-like
IPR017884SANT_dom
IPR001005SANT/Myb
Homology
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|585112117|gb|EWM29546.1| (myb dna binding protein transcription factor-like protein [Nannochloropsis gaditana])

HSP 1 Score: 533.102 bits (1372), Expect = 0.000e+0
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0
Query:    1 MTTTMESDGGSVMMEDIQENDKQSELKPGIMGVRGSLRSRRREGEEDADSNANNNSNASVNTTIINAGHNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE 256
            MTTTMESDGGSVMMEDIQENDKQSELKPGIMGVRGSLRSRRREGEEDADSNANNNSNASVNTTIINAGHNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE
Sbjct:    1 MTTTMESDGGSVMMEDIQENDKQSELKPGIMGVRGSLRSRRREGEEDADSNANNNSNASVNTTIINAGHNDKESVGRSSARIKNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPHPFSILPPDE 256          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|219109824|ref|XP_002176665.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411200|gb|EEC51128.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 145.206 bits (365), Expect = 1.908e-39
Identity = 62/132 (46.97%), Postives = 87/132 (65.91%), Query Frame = 0
Query:  113 EGVGSGGGKGKPVERWRAQRMAEDYVNLVGDLMY-PKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEP 243
            EG  +G   GK   RW+A ++ EDY++    +M  P    GPYGYD ++ + PLE  + L  +  P RR TV+E WSP+E+A FEGA+   GK+FY I K + +KST+E I+FYYVWK TSHY+ WK+++ P
Sbjct:   65 EGSTNGVDDGKSRSRWKAHQIVEDYIDFASHMMLLPTSQLGPYGYDTSRRQFPLETVSALAFVASPLRRPTVVERWSPYEIAIFEGAMAQYGKDFYHIHKFIKTKSTQEIIDFYYVWKKTSHYRLWKKTYIP 196          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|298706268|emb|CBJ29293.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 144.821 bits (364), Expect = 8.401e-36
Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = 0
Query:  117 SGGGKGKPVE-RWRAQRMAEDYVNLVGDLMYPKVSFGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSF 241
            S G   KP E RWR  RM EDY N+ G +MY  V  GP+GY+  +G  P+ERP TLG++    RR TV+E WSP++VA FEGAI + GK F+++++ +  K+  + +EFYY+WK T+HY+QWK  F
Sbjct:  385 SKGPSNKPKEMRWRTHRMVEDYTNVCGKIMYGHVRTGPFGYNSVEGRFPMERPTTLGMIKAGMRRPTVIERWSPYDVALFEGAISVHGKVFHKVAEEIEGKTVADVVEFYYMWKKTNHYKQWKSMF 510          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|1210525398|dbj|GAX15741.1| (hypothetical protein FisN_3Lh180 [Fistulifera solaris])

HSP 1 Score: 134.42 bits (337), Expect = 1.222e-35
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 0
Query:  106 SNKRSKVEGVGSGGGKGK------------PVER--WRAQRMAEDYVNLVGDLMYPKVS-FGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPH 247
            +NKRS+ +G    G   K            PVER  W+  R+ E+YV+   +LM   +S  G YGYD +K + PLE  + LG L  P RR  V+E WSP+E+A FE A++  GK F ++   + SK+TKE IEFYY+WK TSHY  WK+ + P  PH
Sbjct:   17 TNKRSRTQGSDEQGIDQKRMRSDESTDTTTPVERTRWKVHRLTEEYVDFASNLMLTPISELGSYGYDPSKLQFPLEAVSALGYLKSPMRRSLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKKKYIP--PH 171          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|1210525637|dbj|GAX15706.1| (hypothetical protein FisN_3Hh180 [Fistulifera solaris])

HSP 1 Score: 133.265 bits (334), Expect = 4.196e-35
Identity = 68/168 (40.48%), Postives = 95/168 (56.55%), Query Frame = 0
Query:   83 KNSAERDSTSSGPSGNTTSTSAGSNKRSKVEGVGSGGGKGKPVER--WRAQRMAEDYVNLVGDLMYPKVS-FGPYGYDMAKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFEPLDPH 247
            K +A  +   +   G T         + +++   S   K  PVER  W+  R+ E+YV+   +LM   +S FG YGYD  K + PLE  + LG L  P RR  V+E WSP+E+A FE A++  GK F ++   + SK+TKE IEFYY+WK TSHY  WK+ + P  PH
Sbjct:    7 KKAATLEEHDTNKRGRTLGNDEQGIDQKRMKSDESSIDKSTPVERTRWKVHRLTEEYVDFASNLMLTPISEFGSYGYDPNKLQFPLEAVSALGYLKSPLRRPLVIEKWSPYEIAVFEAALIQHGKQFEKVQSEIGSKTTKEVIEFYYMWKKTSHYSSWKKQYIP--PH 172          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|569366918|gb|ETO09978.1| (hypothetical protein RFI_27398 [Reticulomyxa filosa])

HSP 1 Score: 88.5817 bits (218), Expect = 3.772e-18
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0
Query:  159 AKGEIPLERPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKR 239
            A+  +     +TL VL+ P R+R+ ++ WS  EVA FE A+   GKNFYEISK++ +K  K+ IEFYY WK ++HYQ WK+
Sbjct:    6 ARDNVATFEYSTLDVLLSPYRKRSPIDEWSAREVALFESAMCCKGKNFYEISKIIGTKCCKQVIEFYYFWKNSTHYQTWKQ 86          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|224009045|ref|XP_002293481.1| (MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220970881|gb|EED89217.1| MYB DNA binding protein/ transcription factor-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 79.337 bits (194), Expect = 7.755e-16
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 0
Query:  187 WSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWKRSFE 242
            WSP+E+  FE A+ L GK F+++ K + +KSTKE +EFYY+WK TSHY++WK  +E
Sbjct:    1 WSPYEIVTFEAAMALHGKIFHQVQKWVKTKSTKEIVEFYYIWKKTSHYRRWKSQYE 56          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|857973201|emb|CEP00482.1| (hypothetical protein PBRA_001536 [Plasmodiophora brassicae])

HSP 1 Score: 80.4925 bits (197), Expect = 2.687e-14
Identity = 28/70 (40.00%), Postives = 49/70 (70.00%), Query Frame = 0
Query:  169 NTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWK 238
            +T+  L+ P R+R++ E WSP ++A FE  +  +GK+F+ I+KL+ +K+T++ +  YY WK ++HY  WK
Sbjct:  171 STIEALLSPLRKRSIWESWSPIQLAIFESGLCTLGKDFHAIAKLIENKTTRDVVNLYYHWKQSAHYHMWK 240          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|873223667|emb|CEM28293.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-14
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  171 LGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWK 238
              +L+   R    ++ W P EV  FEGAI   GK+F++I+KL+ +K+TKECI+FYY+WK TS Y+ WK
Sbjct:  321 FDLLISKYRHSHTIDLWGPKEVMIFEGAICRYGKDFHKIAKLVETKTTKECIDFYYLWKKTSRYRHWK 388          
BLAST of EWM29546.1 vs. NCBI_GenBank
Match: gi|915147195|ref|XP_013338557.1| (hypothetical protein, conserved [Eimeria maxima] >gi|557243592|emb|CDJ61907.1| hypothetical protein, conserved [Eimeria maxima])

HSP 1 Score: 81.2629 bits (199), Expect = 7.360e-14
Identity = 34/72 (47.22%), Postives = 47/72 (65.28%), Query Frame = 0
Query:  167 RPNTLGVLMCPARRRTVMEHWSPFEVACFEGAIVLVGKNFYEISKLLPSKSTKECIEFYYVWKMTSHYQQWK 238
            R   L +L  P R + +++ WSP E+A FE +I   GKNF +I KL+ +K   E IEFYY+WKMT+ Y+ WK
Sbjct: 1096 RLTPLEILTSPLRHKEIIDLWSPKEIAIFEASICKFGKNFNKIEKLIQTKKYNEIIEFYYLWKMTNRYKAWK 1167          
The following BLAST results are available for this feature:
BLAST of EWM29546.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112117|gb|EWM29546.1|0.000e+0100.00myb dna binding protein transcription factor-like ... [more]
gi|219109824|ref|XP_002176665.1|1.908e-3946.97predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|298706268|emb|CBJ29293.1|8.401e-3649.21conserved unknown protein [Ectocarpus siliculosus][more]
gi|1210525398|dbj|GAX15741.1|1.222e-3543.31hypothetical protein FisN_3Lh180 [Fistulifera sola... [more]
gi|1210525637|dbj|GAX15706.1|4.196e-3540.48hypothetical protein FisN_3Hh180 [Fistulifera sola... [more]
gi|569366918|gb|ETO09978.1|3.772e-1848.15hypothetical protein RFI_27398 [Reticulomyxa filos... [more]
gi|224009045|ref|XP_002293481.1|7.755e-1653.57MYB DNA binding protein/ transcription factor-like... [more]
gi|857973201|emb|CEP00482.1|2.687e-1440.00hypothetical protein PBRA_001536 [Plasmodiophora b... [more]
gi|873223667|emb|CEM28293.1|6.487e-1448.53unnamed protein product [Vitrella brassicaformis C... [more]
gi|915147195|ref|XP_013338557.1|7.360e-1447.22hypothetical protein, conserved [Eimeria maxima] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1123rna1123Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications