EWM29592.1, cds1120 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|585112163|gb|EWM29592.1| (stomatal cytokinesis defective scd1 protein [Nannochloropsis gaditana]) HSP 1 Score: 2642.07 bits (6847), Expect = 0.000e+0 Identity = 1293/1293 (100.00%), Postives = 1293/1293 (100.00%), Query Frame = 0
Query: 1 MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSFSGQGYEGGGRQRDAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDAGVRSPGGEESNGAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDKEDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRAPTTNSGLSVPDPAATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRRSYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQGGHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDALGYGYHAVHVARSTDAKKSNHESMLRNGSAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREPDRETPPDGAVETMDV 1293
MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSFSGQGYEGGGRQRDAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDAGVRSPGGEESNGAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDKEDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRAPTTNSGLSVPDPAATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRRSYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQGGHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDALGYGYHAVHVARSTDAKKSNHESMLRNGSAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREPDRETPPDGAVETMDV
Sbjct: 1 MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSFSGQGYEGGGRQRDAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDAGVRSPGGEESNGAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDKEDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRAPTTNSGLSVPDPAATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRRSYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQGGHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDALGYGYHAVHVARSTDAKKSNHESMLRNGSAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREPDRETPPDGAVETMDV 1293
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|743931451|ref|XP_011009996.1| (PREDICTED: uncharacterized protein LOC105114954 isoform X2 [Populus euphratica]) HSP 1 Score: 73.559 bits (179), Expect = 2.401e-9 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query: 827 LPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
L P LP HVD SF PL+Q L + LLK FTAVLLER ++++S+ +L +A E + LIYPF W Y PLL GV
Sbjct: 26 LEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV 105
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|743931449|ref|XP_011009995.1| (PREDICTED: uncharacterized protein LOC105114954 isoform X1 [Populus euphratica]) HSP 1 Score: 73.1738 bits (178), Expect = 3.562e-9 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query: 827 LPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
L P LP HVD SF PL+Q L + LLK FTAVLLER ++++S+ +L +A E + LIYPF W Y PLL GV
Sbjct: 192 LEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV 271
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|566196987|ref|XP_002317936.2| (STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein [Populus trichocarpa] >gi|550326464|gb|EEE96156.2| STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein [Populus trichocarpa]) HSP 1 Score: 73.1738 bits (178), Expect = 3.612e-9 Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query: 827 LPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
L P LP HVD SF PL+Q L + LLK FTAVLLER ++++S+ +L +A E + LIYPF W Y PLL GV
Sbjct: 192 LEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV 271
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|764594677|ref|XP_011465682.1| (PREDICTED: DENN domain and WD repeat-containing protein SCD1 [Fragaria vesca subsp. vesca]) HSP 1 Score: 72.0182 bits (175), Expect = 7.849e-9 Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 0
Query: 806 TNSGLSVPDPAATSSSSSSCPLPPP------------LLT-------SLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
++SG S P +S S+ PLP P LL+ LP HVD SF PL+Q L + L+K FTAVLLER ++++S +L +A E + LIYPF W Y PLL GV
Sbjct: 152 SSSGSSKPLWDIIASMVSNVPLPTPGKDRVLFAIDNVLLSVETPPKDGLP-HVDISFQPLVQCLDVDNLIKFFTAVLLERRILIRSHKYSLLTLASEAICYLIYPFRWQQVYIPLLFFSGV 271
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1035929626|gb|OAY59212.1| (hypothetical protein MANES_01G013600 [Manihot esculenta]) HSP 1 Score: 70.8626 bits (172), Expect = 1.541e-8 Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0
Query: 838 HVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
HVD SF PL+Q L + L+K FTAVLLER ++++S+ ++ + EG+ LIYPF W Y PLL GV
Sbjct: 202 HVDISFQPLVQCLDVDNLIKFFTAVLLERRILLRSNKYSILTLVSEGICHLIYPFRWQHVYIPLLFFSGV 271
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1035929627|gb|OAY59213.1| (hypothetical protein MANES_01G013600 [Manihot esculenta]) HSP 1 Score: 70.8626 bits (172), Expect = 1.645e-8 Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0
Query: 838 HVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
HVD SF PL+Q L + L+K FTAVLLER ++++S+ ++ + EG+ LIYPF W Y PLL GV
Sbjct: 202 HVDISFQPLVQCLDVDNLIKFFTAVLLERRILLRSNKYSILTLVSEGICHLIYPFRWQHVYIPLLFFSGV 271
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|901806028|gb|KMZ63402.1| (Stomatal cytokinesis defective / SCD1 protein [Zostera marina]) HSP 1 Score: 70.8626 bits (172), Expect = 1.760e-8 Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0
Query: 838 HVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
H D SF PL+Q L + L+K FTAVLLER ++++S+ TL + E LIYPF WL Y PLL GV
Sbjct: 209 HADISFQPLVQCLDVDNLIKLFTAVLLERRILLRSNKYTLLTLVSEAFCNLIYPFRWLHVYIPLLFFSGV 278
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1208503655|gb|OWM65148.1| (hypothetical protein CDL15_Pgr008735 [Punica granatum]) HSP 1 Score: 70.0922 bits (170), Expect = 2.518e-8 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 800 PKRAPTTNSGL--SVPDPA--------ATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
P+ P +G+ +VP P A +S S PP LP HVD SF P+IQ L + L+K FTAVLLER ++++S+ +L + E + LIYPF W Y PLL GV
Sbjct: 81 PRSYPIVLTGVVSNVPLPTPGKDRVLFAIENSLLSVEAPPK--DGLP-HVDISFQPIIQCLDVDNLIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGV 195
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1102711265|gb|OIW10047.1| (hypothetical protein TanjilG_32787 [Lupinus angustifolius]) HSP 1 Score: 70.0922 bits (170), Expect = 2.936e-8 Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 0
Query: 824 SCPLP--PPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
SC L P + LP HVD SF PL+Q L + L++ FTAVLLER ++++++ +L +A E + LIYPF W Y PLL GV
Sbjct: 187 SCLLSVESPPVDGLP-HVDISFQPLVQCLDVDNLMRLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFFSGV 271 The following BLAST results are available for this feature:
BLAST of EWM29592.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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