EWM29592.1, cds1120 (CDS) Nannochloropsis gaditana

Overview
NameEWM29592.1
Unique Namecds1120
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1242567..1242618 -
Alignment locationCM002456.1:1238605..1242434 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM29592.1
Productstomatal cytokinesis defective scd1 protein
Orig transcript idgnl|cribi|Naga_100006g46.8681.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1242567..1242618 -
CM002456.1supercontigCM002456.1:1238605..1242434 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO:0038032termination of G protein-coupled receptor signaling pathway
Vocabulary: INTERPRO
TermDefinition
IPR024066RGS_subdom1
IPR005112dDENN_dom
IPR016137RGS
IPR001194DENN_dom
Homology
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|585112163|gb|EWM29592.1| (stomatal cytokinesis defective scd1 protein [Nannochloropsis gaditana])

HSP 1 Score: 2642.07 bits (6847), Expect = 0.000e+0
Identity = 1293/1293 (100.00%), Postives = 1293/1293 (100.00%), Query Frame = 0
Query:    1 MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSFSGQGYEGGGRQRDAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDAGVRSPGGEESNGAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDKEDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRAPTTNSGLSVPDPAATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRRSYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQGGHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDALGYGYHAVHVARSTDAKKSNHESMLRNGSAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREPDRETPPDGAVETMDV 1293
            MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSFSGQGYEGGGRQRDAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDAGVRSPGGEESNGAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDKEDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRAPTTNSGLSVPDPAATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRRSYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQGGHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDALGYGYHAVHVARSTDAKKSNHESMLRNGSAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREPDRETPPDGAVETMDV
Sbjct:    1 MGDKYIRTSISFEHLIDDPGWMPYFLDFLSKHGQSHLLLFWLEVEVFELAAGGGPSLVTQATRIYESYLGEGAPKRIDVPDVMLTFLEGEITSGAPNINVFAAVHAFVFRRLHQTWYPAFLLSTTYRSLLVHLKNSFRTPLKEVLLDEVQSRYIEAFLLNSTSPTGPCTVGNVYLWKKIQHDLRPLGARLSRDRLVGPAGDARNANDLRTFIMDAKAVYEAYIQPSPQVGVSGGPSLSSRSFSGQGYEGGGRQRDAPSATALGPELRYSIAECLGRLASQSRYYSGVGTGGIGQIDRSIIGELNTYLIEAQRVILAWLEAEVYPSFLESNLVGILSGEIQSQRSAPLRRKKRLRTLFKSVRSFRHVYVPPCPRSEGRGLVLVSTEDVFRKPEPLTHEFVWAFDVAVFPVDLTAGRALRAADLRTDVGRRESEVDGEGGEKEDAGVRSPGGEESNGAVGGAILCSKNEDGDSGFFHLDEPVPNSKGTSLGQEEEQGHRKKAKRPLHFSSAVRSSQVLGLPKPSVYGSNDVAGADTATEDKEDVATSLCAAIETRLVREIQRLAFPSLCLMPLERSTFVLFSPKLVVPEATLHHFVLPISRKDVDPELRRDIRSADGRDLASSLGNRSPSPFVASPRVAVRSPSGEGELAPPDLKADQSIDLYGACLMEWAPAGADVLLPRCVVLVSTEPRVASLRRAVVRMRESMGQPGVGGSPIMPDTPKKTPWQLEDEQLRQQSERVQTMLDTSLFAPARGGKRSERPTDFQKTDAGDKTDAEESAAYWLRAWKKTGMAASASTVLFSPKRAPTTNSGLSVPDPAATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGVCSFWDDVKRSAGGRSWYDYVFEEDGLDESLMRIAGRRSYAEPMTASSAMRQVPGFLVGIETCIVDAALTATKIVSPAYSDGDGDSANSSSGCHAWACATCDVHEMGVFSGMDGVPSFDVDSPFSPGHPSPLSTRSMPLSTRGQGGHGLSPSGVATAGHAARNTSTTKYGELPPCVRASTRELLASAFIVDLDNDCVEGPRRGDPATATLPVLPEAAVCTLLTSIQQLVNPSMGSPTGAGNGDALGYGYHAVHVARSTDAKKSNHESMLRNGSAAPSSEETKSKDNAMKNVTGNVQLHAAFVTFFRQLLLDRYREYTLSYLEEQMVAFHADSFLASQPEPTHAFWTDMFQTRLFAYFLLVEHQRVAASFREPDRETPPDGAVETMDV 1293          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|743931451|ref|XP_011009996.1| (PREDICTED: uncharacterized protein LOC105114954 isoform X2 [Populus euphratica])

HSP 1 Score: 73.559 bits (179), Expect = 2.401e-9
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  827 LPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            L  P    LP HVD SF PL+Q L  + LLK FTAVLLER ++++S+  +L  +A E +  LIYPF W   Y PLL   GV
Sbjct:   26 LEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV 105          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|743931449|ref|XP_011009995.1| (PREDICTED: uncharacterized protein LOC105114954 isoform X1 [Populus euphratica])

HSP 1 Score: 73.1738 bits (178), Expect = 3.562e-9
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  827 LPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            L  P    LP HVD SF PL+Q L  + LLK FTAVLLER ++++S+  +L  +A E +  LIYPF W   Y PLL   GV
Sbjct:  192 LEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV 271          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|566196987|ref|XP_002317936.2| (STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein [Populus trichocarpa] >gi|550326464|gb|EEE96156.2| STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein [Populus trichocarpa])

HSP 1 Score: 73.1738 bits (178), Expect = 3.612e-9
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 0
Query:  827 LPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            L  P    LP HVD SF PL+Q L  + LLK FTAVLLER ++++S+  +L  +A E +  LIYPF W   Y PLL   GV
Sbjct:  192 LEAPPKDGLP-HVDISFQPLVQCLDVDNLLKLFTAVLLERRILLRSNKYSLLTIASEAICHLIYPFRWQHVYIPLLFFSGV 271          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|764594677|ref|XP_011465682.1| (PREDICTED: DENN domain and WD repeat-containing protein SCD1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 72.0182 bits (175), Expect = 7.849e-9
Identity = 49/121 (40.50%), Postives = 64/121 (52.89%), Query Frame = 0
Query:  806 TNSGLSVPDPAATSSSSSSCPLPPP------------LLT-------SLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            ++SG S P     +S  S+ PLP P            LL+        LP HVD SF PL+Q L  + L+K FTAVLLER ++++S   +L  +A E +  LIYPF W   Y PLL   GV
Sbjct:  152 SSSGSSKPLWDIIASMVSNVPLPTPGKDRVLFAIDNVLLSVETPPKDGLP-HVDISFQPLVQCLDVDNLIKFFTAVLLERRILIRSHKYSLLTLASEAICYLIYPFRWQQVYIPLLFFSGV 271          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1035929626|gb|OAY59212.1| (hypothetical protein MANES_01G013600 [Manihot esculenta])

HSP 1 Score: 70.8626 bits (172), Expect = 1.541e-8
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0
Query:  838 HVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            HVD SF PL+Q L  + L+K FTAVLLER ++++S+  ++  +  EG+  LIYPF W   Y PLL   GV
Sbjct:  202 HVDISFQPLVQCLDVDNLIKFFTAVLLERRILLRSNKYSILTLVSEGICHLIYPFRWQHVYIPLLFFSGV 271          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1035929627|gb|OAY59213.1| (hypothetical protein MANES_01G013600 [Manihot esculenta])

HSP 1 Score: 70.8626 bits (172), Expect = 1.645e-8
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 0
Query:  838 HVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            HVD SF PL+Q L  + L+K FTAVLLER ++++S+  ++  +  EG+  LIYPF W   Y PLL   GV
Sbjct:  202 HVDISFQPLVQCLDVDNLIKFFTAVLLERRILLRSNKYSILTLVSEGICHLIYPFRWQHVYIPLLFFSGV 271          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|901806028|gb|KMZ63402.1| (Stomatal cytokinesis defective / SCD1 protein [Zostera marina])

HSP 1 Score: 70.8626 bits (172), Expect = 1.760e-8
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0
Query:  838 HVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            H D SF PL+Q L  + L+K FTAVLLER ++++S+  TL  +  E    LIYPF WL  Y PLL   GV
Sbjct:  209 HADISFQPLVQCLDVDNLIKLFTAVLLERRILLRSNKYTLLTLVSEAFCNLIYPFRWLHVYIPLLFFSGV 278          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1208503655|gb|OWM65148.1| (hypothetical protein CDL15_Pgr008735 [Punica granatum])

HSP 1 Score: 70.0922 bits (170), Expect = 2.518e-8
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 0
Query:  800 PKRAPTTNSGL--SVPDPA--------ATSSSSSSCPLPPPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            P+  P   +G+  +VP P         A  +S  S   PP     LP HVD SF P+IQ L  + L+K FTAVLLER ++++S+  +L  +  E +  LIYPF W   Y PLL   GV
Sbjct:   81 PRSYPIVLTGVVSNVPLPTPGKDRVLFAIENSLLSVEAPPK--DGLP-HVDISFQPIIQCLDVDNLIKLFTAVLLERRILLRSNKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGV 195          
BLAST of EWM29592.1 vs. NCBI_GenBank
Match: gi|1102711265|gb|OIW10047.1| (hypothetical protein TanjilG_32787 [Lupinus angustifolius])

HSP 1 Score: 70.0922 bits (170), Expect = 2.936e-8
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 0
Query:  824 SCPLP--PPLLTSLPLHVDASFFPLIQALSPEILLKAFTAVLLERPMVVKSSSRTLTMVACEGLRRLIYPFAWLLPYKPLLPVGGV 907
            SC L    P +  LP HVD SF PL+Q L  + L++ FTAVLLER ++++++  +L  +A E +  LIYPF W   Y PLL   GV
Sbjct:  187 SCLLSVESPPVDGLP-HVDISFQPLVQCLDVDNLMRLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFFSGV 271          
The following BLAST results are available for this feature:
BLAST of EWM29592.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112163|gb|EWM29592.1|0.000e+0100.00stomatal cytokinesis defective scd1 protein [Nanno... [more]
gi|743931451|ref|XP_011009996.1|2.401e-949.38PREDICTED: uncharacterized protein LOC105114954 is... [more]
gi|743931449|ref|XP_011009995.1|3.562e-949.38PREDICTED: uncharacterized protein LOC105114954 is... [more]
gi|566196987|ref|XP_002317936.2|3.612e-949.38STOMATAL CYTOKINESIS-DEFECTIVE 1 family protein [P... [more]
gi|764594677|ref|XP_011465682.1|7.849e-940.50PREDICTED: DENN domain and WD repeat-containing pr... [more]
gi|1035929626|gb|OAY59212.1|1.541e-848.57hypothetical protein MANES_01G013600 [Manihot escu... [more]
gi|1035929627|gb|OAY59213.1|1.645e-848.57hypothetical protein MANES_01G013600 [Manihot escu... [more]
gi|901806028|gb|KMZ63402.1|1.760e-850.00Stomatal cytokinesis defective / SCD1 protein [Zos... [more]
gi|1208503655|gb|OWM65148.1|2.518e-839.83hypothetical protein CDL15_Pgr008735 [Punica grana... [more]
gi|1102711265|gb|OIW10047.1|2.936e-845.35hypothetical protein TanjilG_32787 [Lupinus angust... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1121rna1121Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications