EWM29618.1, cds1100 (CDS) Nannochloropsis gaditana

Overview
NameEWM29618.1
Unique Namecds1100
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1181211..1181294 +
Alignment locationCM002456.1:1181500..1181592 +
Alignment locationCM002456.1:1181743..1183617 +
Alignment locationCM002456.1:1183822..1185428 +
Alignment locationCM002456.1:1185660..1185972 +
Alignment locationCM002456.1:1186091..1186683 +
Alignment locationCM002456.1:1186851..1187220 +
Alignment locationCM002456.1:1187370..1187390 +
Alignment locationCM002456.1:1187526..1187567 +
Alignment locationCM002456.1:1187732..1187752 +
Alignment locationCM002456.1:1188045..1188065 +
Alignment locationCM002456.1:1188179..1188199 +
Alignment locationCM002456.1:1188328..1188348 +
Alignment locationCM002456.1:1188493..1188576 +
Alignment locationCM002456.1:1188687..1188728 +
Alignment locationCM002456.1:1188877..1189041 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29618.1
Productrna polymerase ii largest subunit
Orig transcript idgnl|cribi|Naga_100006g66.8707.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1181211..1181294 +
CM002456.1supercontigCM002456.1:1181500..1181592 +
CM002456.1supercontigCM002456.1:1181743..1183617 +
CM002456.1supercontigCM002456.1:1183822..1185428 +
CM002456.1supercontigCM002456.1:1185660..1185972 +
CM002456.1supercontigCM002456.1:1186091..1186683 +
CM002456.1supercontigCM002456.1:1186851..1187220 +
CM002456.1supercontigCM002456.1:1187370..1187390 +
CM002456.1supercontigCM002456.1:1187526..1187567 +
CM002456.1supercontigCM002456.1:1187732..1187752 +
CM002456.1supercontigCM002456.1:1188045..1188065 +
CM002456.1supercontigCM002456.1:1188179..1188199 +
CM002456.1supercontigCM002456.1:1188328..1188348 +
CM002456.1supercontigCM002456.1:1188493..1188576 +
CM002456.1supercontigCM002456.1:1188687..1188728 +
CM002456.1supercontigCM002456.1:1188877..1189041 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005665RNA polymerase II, core complex
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006366transcription by RNA polymerase II
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR000684RNA_pol_II_repeat_euk
IPR000722RNA_pol_asu
IPR007066RNA_pol_Rpb1_3
IPR007081RNA_pol_Rpb1_5
IPR007083RNA_pol_Rpb1_4
IPR007080RNA_pol_Rpb1_1
IPR007073RNA_pol_Rpb1_7
IPR007075RNA_pol_Rpb1_6
IPR006592RNA_pol_N
Homology
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|585112189|gb|EWM29618.1| (rna polymerase ii largest subunit [Nannochloropsis gaditana])

HSP 1 Score: 3695.21 bits (9581), Expect = 0.000e+0
Identity = 1790/1790 (100.00%), Postives = 1790/1790 (100.00%), Query Frame = 0 
Query:    1 MDSYFEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCGAMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPRPLWTGKQVFSLVLPKGCNHRGNSNMKPPPKDELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDTYLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDVDIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGGDEDGIGGIGAGVGGATPGTLTPGVATPYGAFGYGAYGAGGASPGAMLTPGIHLGGGKDLSASPLNASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPAGVQEGAYSPSSPVYSPTAAMDEGDDVKKE 1790
            MDSYFEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCGAMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPRPLWTGKQVFSLVLPKGCNHRGNSNMKPPPKDELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDTYLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDVDIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGGDEDGIGGIGAGVGGATPGTLTPGVATPYGAFGYGAYGAGGASPGAMLTPGIHLGGGKDLSASPLNASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPAGVQEGAYSPSSPVYSPTAAMDEGDDVKKE
Sbjct:    1 MDSYFEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCGAMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPRPLWTGKQVFSLVLPKGCNHRGNSNMKPPPKDELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDTYLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDVDIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGGDEDGIGGIGAGVGGATPGTLTPGVATPYGAFGYGAYGAGGASPGAMLTPGIHLGGGKDLSASPLNASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPAGVQEGAYSPSSPVYSPTAAMDEGDDVKKE 1790
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|635365757|emb|CCI45926.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 1851.64 bits (4795), Expect = 0.000e+0
Identity = 951/1822 (52.20%), Postives = 1245/1822 (68.33%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVP-EGVSAD-PLAAAAAAEDQ---------GCGAMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKP--------RPLWTGKQVFSLVLPKGCNHRGNSNMKPPPKD--ELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGG--DEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAYGAGG--------ASPGAMLTPGIHLGG-GKDLSASPLNASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPAGVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEE+R MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P+YH+GF+ +VL+ILR VC++CS+++ D +D   +  +  +    RLKA+ E+C  G K    G  V  E +  D  L      +D+         GCG +QP+Y+R+G++++V FP+  E    + DRKQ LPA +   IFKN+SD     LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL+IDQVGVP SIA+NLTVPERVT  N+  + +L+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RD+D+VLFNRQPSLHKMSIM HRVKV  WSTFRLNLSVT+PYNADFDGDEMNLH+PQ+L ARAEA+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+E+DV+MN+LMWV          +P PAIL P        RP+WTGKQ+FS V+P+  N  G S+     +   +L+  DS+V++Q GE++ G+IDK+++G+SAGG+IH T L+ G +E   F+  VQ +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V+  Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV A+YD +VR  +G +IQFLYGEDGMDAVW+EKQ      LN+  FE KY+ D+  D  G VP  P + +L   +    R +  T  +L++E++QL  DR  L  +L +R +G+E+D    +PVN+ RLI  A++   +  +  S L P  +I+ +++LC K +VV G+D  +  A ENAT+ F I LRS  A+K V  E RLT  AF+++LG++E  F  + VS GEMAGV AAQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  T++ ED+  +  +Y +    + +   A SPW++RIEL+++ +A K++ + ++ + I   +G D    I +D N  + VLR+R V D+EE +           D  FLK VE  + T++K+ G   + KVY        W  + GF    E    T G N+++V+    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+ +L+LD +KL DA E  E      V+ G  DE      G G   ATP T TPG   ++P+   G     + G         SPG M +PG  +    +   AS   ASP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA      SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAY+PTSP YSPTSPAY+P+   SP      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEVRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHIELARPMYHLGFIKEVLKILRSVCFHCSKILSDERDHRFRSAMKIKDGKRRLKAVFEIC-NGKKLCEYGEEVDMEKMREDLNLGLQGGLDDKTKSKEGGHGGCGGLQPIYKRQGIKILVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNISDADCYSLGLDPRWARPDWLILTLMPVPPPHVRPSVALDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFINNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLEIDQVGVPLSIAMNLTVPERVTPFNMAAMHRLISNGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDEDLVLFNRQPSLHKMSIMSHRVKVFHWSTFRLNLSVTSPYNADFDGDEMNLHVPQSLTARAEAQELMMVHKVIITPQSNRPVMGIVQDSLLGVQKFTKRDIFIEKDVVMNLLMWV----FNWDGRIPTPAILVPKKGEIGKYRPIWTGKQIFSQVIPQ-INFTGFSSTHSSKESFAKLSPIDSRVIVQRGELLAGIIDKKTIGSSAGGLIHTTMLEKGPEEARYFLGAVQKLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVQRGQKGKLETQPGRTMVESFEQLVNKVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFQHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMARYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHRLNKVEFEQKYMFDISSDFLGCVPKCPEQLFLDPEIIKDIRTNQHTQHILRDEIAQLQKDRVNLRVILASRGQGQESDNAAQIPVNVRRLIENAQQLFSVDLQKPSSLHPAHIIDGVKELCKKIIVVQGNDPLSLEAQENATLFFQILLRSALASKCVTLEHRLTETAFEWLLGEIESKFTSSLVSAGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLQIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTAIYYDPDPMNTIIEEDQEFVSTYYEMP---DEDTPVARSPWLLRIELNREMMADKKLTMSEIASQIESEYGQD-LSCIFTDDNADKLVLRIRIVSDEEEKMQRTGESTVGQEDDTFLKRVEHNMLTQMKLRGVQSVKKVYIREGRPTHWFDDVGFKMTTEWVLDTDGTNLLDVLCFPQVDGTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGITDLVLDAKKLTDAIEY-EASEIQQVMRGINDEWRSPEQGPGTPMATPFTSTPGFSASSPFSPGGGSFSPSAGTFSPMTSPTSPGFMSSPGFSVASPARSPGASLDPASPAFSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT---SP------AYSPTSPAYSPTS 1795
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|301090036|ref|XP_002895253.1| (DNA-directed RNA polymerase II largest subunit [Phytophthora infestans T30-4] >gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora infestans T30-4])

HSP 1 Score: 1850.87 bits (4793), Expect = 0.000e+0
Identity = 959/1831 (52.38%), Postives = 1243/1831 (67.89%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPR--------PLWTGKQVFSLVLPKGCNHRG-NSNMKPPPK-DELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGG--DEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAY--GAGGASPGAM-LTPGIHLGGGKDLSASPLN-ASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYT----PTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEEIR MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGH+ELA+P+YH+GF+ +VL+ILRCVC++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR++G++++V FP+  E    + DRKQ LPA +   IFKN+SD+    LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + QL+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RDDD+VLFNRQPSLHKMSIM HRVKV DWSTFRLNLSVT+PYNADFDGDEMNLH+PQ++ ARA+A+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+ +D +MN+LMWV +        VP PAIL P+        P+WTGKQ+FS ++P   N  G +S  K   K  +L+  DS+V+IQ GE++ G+IDK+ +G+SAGG++H+T L+ G  ET R +  +Q +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V   Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV  +YD +VR  +G +IQFLYGEDGMDAVW+EKQ     +LN+  FE KYV D  D+  G VP  P + YL   +    R +  T  +L+EEL+QL  DR  L  +L +R +G+E+D    +PVN+ RL+  A++   I  +  S L P  +I  +++LC K +VV GDD  +  A ENAT+ F I LRST A+K V  E RLT  AF++++G++E  F  A VS GEMAGV  AQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  TVV ED+  +  +Y +    + +   A SPW++RIEL+   +A K++ + ++ A +   +G D    I +D N  R VLR+R + D+EE +           D  FLK VE  + T++K+ G + + KVY        W  + GF    E    T G N+++VM    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+++L+LD +KL +A E  E      V+ G  +E      G G   ATP   TPG   ++P+   G G++   AG  SP A   +PG          ASPLN  SP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA      SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAYT    PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHVELARPMYHMGFIKEVLKILRCVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEIC--SNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNW----DGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIVP-AINFTGFSSTHKSSEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYVFDPSDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMP---DEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQD-LSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEY-EASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGG-GSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1800
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|675214245|ref|XP_008916007.1| (DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica INRA-310] >gi|566031579|gb|ETI54490.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica P1569] >gi|567969264|gb|ETK94360.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica] >gi|567997657|gb|ETL47736.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica] >gi|568026877|gb|ETM00848.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica] >gi|568057360|gb|ETM54030.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica] >gi|568083699|gb|ETM98661.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica INRA-310] >gi|570335293|gb|ETO83241.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica P1976] >gi|570959337|gb|ETP24316.1| DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 1848.94 bits (4788), Expect = 0.000e+0
Identity = 959/1831 (52.38%), Postives = 1242/1831 (67.83%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPR--------PLWTGKQVFSLVLPKGCNHRG-NSNMKPPPK-DELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGG--DEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAY--GAGGASPGAM-LTPGIHLGGGKDLSASPLN-ASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYT----PTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEEIR MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P+YH+GF+ +VL+ILR VC++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR++G++++V FP+  E    + DRKQ LPA +   IFKN+SD+    LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + QL+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RDDD+VLFNRQPSLHKMSIM HRVKV DWSTFRLNLSVT+PYNADFDGDEMNLH+PQ++ ARA+A+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+ +D +MN+LMWV +        VP PAIL P+        P+WTGKQ+FS ++P   N  G +S  K   K  +L+  DS+V+IQ GE++ G+IDK+ +G+SAGG++H+T L+ G  ET R +  +Q +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V   Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV  +YD +VR  +G +IQFLYGEDGMDAVW+EKQ     +LN+  FE KYV D  D+  G VP  P + YL   +    R +  T  +L+EEL+QL  DR  L  +L +R +G+E+D    +PVN+ RL+  A++   I  +  S L P  +I  +++LC K +VV GDD  +  A ENAT+ F I LRST A+K V  E RLT  AF++++G++E  F  A VS GEMAGV  AQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  TVV ED+  +  +Y +    + +   A SPW++RIEL+   +A K++ + ++ A +   +G D    I +D N  R VLR+R + D+EE +           D  FLK VE  + T++K+ G + + KVY        W  + GF    E    T G N+++VM    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+++L+LD +KL +A E  E      V+ G  +E      G G   ATP   TPG   ++P+   G G++   AG  SP A   +PG          ASPLN  SP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA      SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAYT    PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEIC--SNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLIMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNW----DGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIIP-AINFTGFSSTHKSSEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVHFEKKYVFDPSDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMP---DEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQD-LSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEY-EASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGG-GSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1800

HSP 2 Score: 199.134 bits (505), Expect = 2.507e-47
Identity = 107/185 (57.84%), Postives = 133/185 (71.89%), Query Frame = 0 
Query: 1578 SPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAY----SPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSD 1756
            SP  SP   +    +P Y   +  +   +  Y   SPAY     S +SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAY    SP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SP++SP SP Y PT   Y+PT+  Y+P+D
Sbjct: 1670 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPASPEYNPTEGGYNPTASGYSPTD 1849
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|970630928|gb|KUF77727.1| (DNA-directed RNA polymerase [Phytophthora nicotianae])

HSP 1 Score: 1847.4 bits (4784), Expect = 0.000e+0
Identity = 956/1834 (52.13%), Postives = 1240/1834 (67.61%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPR--------PLWTGKQVFSLVLPKGCNHRG-NSNMKPPPK-DELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQ-----DAQEMPELGGGFGVLGGDEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAY--GAGGASPGAM-LTPGIHLGGGKDLSASPLN-ASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYT----PTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEEIR MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P+YH+GF+ +VL+ILR VC++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR++G++++V FP+  E    + DRKQ LPA +   IFKN+SD+    LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + QL+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RDDD+V FNRQPSLHKMSIM HRVKV DWSTFRLNLSVT+PYNADFDGDEMNLH+PQ++ ARA+A+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+ +D +MN+LMWV +        VP PAIL P+        P+WTGKQ+FS ++P   N  G +S  K   K  +L+  DS+V+IQ GE++ G+IDK+ +G+SAGG++H+T L+ G  ET R +  +Q +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V   Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV  +YD +VR  +G +IQFLYGEDGMDAVW+EKQ     +LN+  FE KYV D  D+  G VP  P + YL   +    R +  T  +L+EEL+QL  DR  L  +L +R +G+E+D    +PVN+ RL+  A++   I  +  S L P  +I  +++LC K +VV GDD  +  A ENAT+ F I LRST A+K V  E RLT  AF++++G++E  F  A VS GEMAGV  AQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  TVV ED+  +  +Y +    + +   A SPW++RIEL+   +A K++ + ++ A +   +G D    I +D N  R VLR+R + D+EE +           D  FLK VE  + T++K+ G + + KVY        W  + GF    E    T G N+++VM    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+++L+LD +KL      +A E+ ++  G        D     G G   ATP   TPG   ++P+   G G++   AG  SP A   +PG          ASPLN  SP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA      SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAYT    PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEIC--SNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEXMEDVPGSGDRKQNLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLIMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVXFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNW----DGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIIP-AINFTGFSSTHKSSEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNXWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVHFEKKYVFDPSDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMP---DEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQD-LSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEYEASEIQQVMQGLDNXWRSPDQ----GPGTPMATPFASTPGFSASSPFSPGG-GSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1800

HSP 2 Score: 199.134 bits (505), Expect = 2.507e-47
Identity = 107/185 (57.84%), Postives = 133/185 (71.89%), Query Frame = 0 
Query: 1578 SPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAY----SPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSD 1756
            SP  SP   +    +P Y   +  +   +  Y   SPAY     S +SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAY    SP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SP++SP SP Y PT   Y+PT+  Y+P+D
Sbjct: 1670 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPASPEYNPTEGGYNPTASGYSPTD 1849
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|970655156|gb|KUF93360.1| (hypothetical protein AM588_10004091 [Phytophthora nicotianae])

HSP 1 Score: 1847.02 bits (4783), Expect = 0.000e+0
Identity = 959/1831 (52.38%), Postives = 1242/1831 (67.83%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPR--------PLWTGKQVFSLVLPKGCNHRG-NSNMKPPPK-DELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGG--DEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAY--GAGGASPGAM-LTPGIHLGGGKDLSASPLN-ASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYT----PTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEEIR MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P+YH+GF+ +VL+ILR VC++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR++G++++V FP+  E    + DRKQ LPA +   IFKN+SD+    LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + QL+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RDDD+VLFNRQPSLHKMSIM HRVKV DWSTFRLNLSVT+PYNADFDGDEMNLH+PQ++ ARA+A+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+ +D +MN+LMWV +        VP PAIL P+        P+WTGKQ+FS ++P   N  G +S  K   K  +L+  DS+V+IQ GE++ G+IDK+ +G+SAGG++H+T L+ G  ET R +  +Q +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V   Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV  +YD +VR  +G +IQFLYGEDGMDAVW+EKQ     +LN+  FE KYV D  D+  G VP  P + YL   +    R +  T  +L+EEL+QL  DR  L  +L +R +G+E+D    +PVN+ RL+  A++   I  +  S L P  +I  +++LC K +VV GDD  +  A ENAT+ F I LRST A+K V  E RLT  AF++++G++E  F  A VS GEMAGV  AQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  TVV ED+  +  +Y +    + +   A SPW++RIEL+   +A K++ + ++ A +   +G D    I +D N  R VLR+R + D+EE +           D  FLK VE  + T++K+ G + + KVY        W  + GF    E    T G N+++VM    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+++L+LD +KL +A E  E      V+ G  +E      G G   ATP   TPG   ++P+   G G++   AG  SP A   +PG          ASPLN  SP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA      SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAYT    PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEIC--SNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLIMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNW----DGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIIP-AINFTGFSSTHKSSEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVHFEKKYVFDPSDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMP---DEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQD-LSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEY-EASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGG-GSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1800

HSP 2 Score: 155.992 bits (393), Expect = 3.017e-34
Identity = 92/167 (55.09%), Postives = 114/167 (68.26%), Query Frame = 0 
Query: 1578 SPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAY----SPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYS----PSSPAYSPSSPAFSPT 1734
            SP  SP   +    +P Y   +  +   +  Y   SPAY     S +SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAY    SP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYS        +YSP+SP ++PT
Sbjct: 1677 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----SYSPASPEYNPT 1834
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|695412681|ref|XP_009525799.1| (RNA polymerase II large subunit [Phytophthora sojae] >gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae])

HSP 1 Score: 1847.02 bits (4783), Expect = 0.000e+0
Identity = 958/1833 (52.26%), Postives = 1243/1833 (67.81%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPR--------PLWTGKQVFSLVLPKGCNHRGNSNMKPPPK--DELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGG--DEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAY--GAGGASPGAM-LTPGIHLGGGKDLSASPLN-ASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSS----PAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEEIR MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P+YH+GF+ +VL+ILR VC++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR++G++++V FP+  E    + DRKQ LPA +   IFKN+SD+    LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPN+ IDQVGVPRSIA+NLTVPERVT  N+  + QL+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RDDD+VLFNRQPSLHKMSIM HRVKV DWSTFRLNLSVT+PYNADFDGDEMNLH+PQ++ ARA+A+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+ +D +MN+LMWV +        VP PAIL P+        P+WTGKQ+FS ++P G N  G S+     +   +L+  DS+V+IQ GE++ G+IDK+ +G+SAGG+IH+T L+ G  ET R +  +Q +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V   Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV  +YD +VR  +G +IQFLYGEDGMDAVW+EKQ     +LN+  FE KYV D  D+  G VP  P + YL   +    R +  T  +L+EEL+QL  DR  L  +L +R +G+E+D    +PVN+ RL+  A++   I  +  S L P  +I  +++LC K +VV GDD  +  A ENAT+ F I LRST A+K V  E RLT  AF++++G++E  F  A VS GEMAGV  AQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  TVV ED+  +  +Y +    + +   A SPW++RIEL+   +A K++ + ++ A +   +G D    I +D N  R VLR+R + D+EE +           D  FLK VE  + T++K+ G + + KVY        W  + GF    E    T G N+++VM    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+++L+LD +KL +A E  E      V+ G  +E      G G   ATP   TPG   ++P+   G G++   AG  SP A   +PG          ASPLN  SP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+S    PAYSP+SPA+SPTSPAY+PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEIC--SNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNIAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLTKDWVMNLLMWVSNW----DGKVPTPAILVPKKGELGKYTPIWTGKQLFSTIVP-GINFTGFSSTHNSKEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLIHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYVFDPSDEELGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELAQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMP---DEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVESEYGQD-LSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDATRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEY-EASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGG-GSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1807
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|570995464|gb|ETP52302.1| (DNA-directed RNA polymerase II subunit RPB1 [Phytophthora parasitica P10297])

HSP 1 Score: 1846.63 bits (4782), Expect = 0.000e+0
Identity = 959/1831 (52.38%), Postives = 1242/1831 (67.83%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKPR--------PLWTGKQVFSLVLPKGCNHRG-NSNMKPPPK-DELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDT--YLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQDAQEMPELGGGFGVLGG--DEDGIGGIGAGVGGATPGTLTPG--VATPYGAFGYGAY--GAGGASPGAM-LTPGIHLGGGKDLSASPLN-ASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYT----PTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEEIR MSVT+ T V+ + +P GIS+ E Y NG PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P+YH+GF+ +VL+ILR VC++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR++G++++V FP+  E    + DRKQ LPA +   IFKN+SD+    LGLD RWARP+WL++T+ PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  +KGEP  I E+ E  LQ  +A F +NE+    Q + +SGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + QL+ NGP  HPGAKY++R+DG R DLRY  + S +AL  GW VERH+RDDD+VLFNRQPSLHKMSIM HRVKV DWSTFRLNLSVT+PYNADFDGDEMNLH+PQ++ ARA+A+++MMV + I++PQ+N PVMGIVQDSLLG  + T+RD F+ +D +MN+LMWV +        VP PAIL P+        P+WTGKQ+FS ++P   N  G +S  K   K  +L+  DS+V+IQ GE++ G+IDK+ +G+SAGG++H+T L+ G  ET R +  +Q +VN WL+  SFT+GV+DT+AD  TL  I   I  AK +V  +V   Q+G+LE QPG+T+  +FE  VN +LN+  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV  +YD +VR  +G +IQFLYGEDGMDAVW+EKQ     +LN+  FE KYV D  D+  G VP  P + YL   +    R +  T  +L+EEL+QL  DR  L  +L +R +G+E+D    +PVN+ RL+  A++   I  +  S L P  +I  +++LC K +VV GDD  +  A ENAT+ F I LRST A+K V  E RLT  AF++++G++E  F  A VS GEMAGV  AQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK V+TP + +++ PD A D  K   +   LEYTT+ D+T  + I YDPDP  TVV ED+  +  +Y +    + +   A SPW++RIEL+   +A K++ + ++ A +   +G D    I +D N  R VLR+R + D+EE +           D  FLK VE  + T++K+ G + + KVY        W  + GF    E    T G N+++VM    VD TRT  ND++EI + LGIEA R  +LNEIR V+ FDG Y+NYRH++ L DVMTFRG L A++RHGINR + GPL+R SFEETVE+L  A++F E D + GV+EN++LG++A +GTG+++L+LD +KL +A E  E      V+ G  +E      G G   ATP   TPG   ++P+   G G++   AG  SP A   +PG          ASPLN  SP  SPM  +    +P Y   +  +   +  Y   SPAY     S +SPA      SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAYT    PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILRSVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEIC--SNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLIMTLMPVPPPHVRPSVAIDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSMTARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSNW----DGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIIP-AINFTGFSSTHKSSEKFSDLSPIDSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRSFTVGVSDTIADVSTLKIIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVHFEKKYVFDPSDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVGAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMP---DEDTPIARSPWLLRIELNPKMMADKKLTMGEIAAQVEAEYGQD-LSCIFTDDNADRLVLRIRIMSDEEEKLQRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEWMLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVNYRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGVSENVMLGQLAPLGTGIMDLVLDAKKLANAIEY-EASEIQQVMQGLDNEWRSPDQGPGTPMATPFASTPGFSASSPFSPGG-GSFSPAAGAFSPMASPASPGFMAASPAHSPASPLNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1800

HSP 2 Score: 199.134 bits (505), Expect = 2.507e-47
Identity = 107/185 (57.84%), Postives = 133/185 (71.89%), Query Frame = 0 
Query: 1578 SPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAY----SPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSD 1756
            SP  SP   +    +P Y   +  +   +  Y   SPAY     S +SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAY    SP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SP++SP SP Y PT   Y+PT+  Y+P+D
Sbjct: 1670 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPASPEYNPTEGGYNPTASGYSPTD 1849
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|698787110|ref|XP_009826587.1| (hypothetical protein H257_03959 [Aphanomyces astaci] >gi|574117676|gb|ETV83157.1| hypothetical protein H257_03959 [Aphanomyces astaci])

HSP 1 Score: 1845.09 bits (4778), Expect = 0.000e+0
Identity = 959/1833 (52.32%), Postives = 1250/1833 (68.19%), Query Frame = 0 
Query:    3 SYFEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCV------GSPVPEGVS---ADPLAAAAAAED---QGCGAMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKP--------RPLWTGKQVFSLVLPK------GCNHRGNSNMKP---PPKDELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETD--TYLPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQ-----DAQEMPELGGGFGVLGGDEDGIGGIGAGVGGATPGTLTPGVATPYGAFGYGAYGAGG--ASPGAMLTPGIHLGGGKDLSASPLNASPFVSPMVASPGRA-TPGYEGGASPFVGAASP-YVSASPAYAGGYGSVS--SPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            S F  S AR+R V  +Q  V SP+E+R+MSVT+   V+ + +P GI++ E + NG+PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P++HVGF+    +IL C+C++CS++++D +D   +  +  +    RLK ++E+C   +K +C          V EG +      +    A +D    GCG   P YR+ G+ + V FP+  E    + D+KQ LPA++   IFKN++D     LG + RWARP+WL++T+ PVPPPHVRPSV +DG+ R +DDLTH LA+IVKANL LL+  KKGEP  I  + E  LQ  ++ F +NE+    Q + KSGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + QL+  GP  HPGAKY++R+DG R DLRY  S S +AL  GW VERH+RDDD VLFNRQPSLHKMSIM HRVKVLDWSTFRLN+SVTTPYNADFDGDEMNLH+PQ++ ARAEA+++M V +NI++PQ N+PVMGIVQDSLLG  + T+R+ FVE+D++MN+LMWV +        VP PAIL P        RP+WTGKQ+ S +LP          H  + N K    P + +++  D+ V+IQ+GE++ G+IDK+++G  AGG+IH T L+ G  E  RF+   Q++VN WL+ +SFT+G++DT+AD  TL NI   I  AK KV+ +V   Q+G+LE QPG+T+   FEM VNT+LNS  ++ G  A+ S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV ++YD +VR   G +IQFLYGEDGMDAVW+EKQ+     LNR  FEAK+ LD  DD  G VP  P E Y+   + T  + +  T   L++E  QL  DR  L  +L +R +G+E+D    +PVNL RLI  A++   I+    + L+P+++I  +RDLC + VVV GDD  +  A ENAT++F I LRST A KRVL E+RL   AF++++G+++  F+ + V+ GEMAGV AAQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK VKTP + +Y+ PD A D  K  ++   LEYTT+ D+T  + I YDPDP +TVV ED   +  +Y V    + +   A SPW++RIEL++  +A K ++++++   I + +G D    I +D N  + VLR+R + ++E+ V           D  FLK VE  + T++++ G   + KV+   +    W  E GF   KE    T G N+++++    +D +RT  ND++EI E LGIEA R  +LNEIR+V+ FDG Y+NYRH++ L DVMTFRG L AV+RHGINR + GPL+R SFEETVE+L  A++F + D++ GVTENI+LG++A++GTGV++L+LD  KL      DA E+  +   F       D +    A   G TP   TP   TP    GYG  GAG    SP    +P +        S SP N     SP   SPG A +PG     SP     SP Y   SPAY+    + S  SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAY+PTSP YSPTSPAY+P+   SPA      AYSPSSP YSPT+
Sbjct:    4 SQFSYSSARLRRVEYLQFGVFSPDEVRQMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGAKVNDCPGHFGHIELARPMFHVGFIKICKQILSCICFHCSKVLVDERDHRFRAAMRQKNGQRRLKMVYEIC--KNKGMCEYGDESNMEKVQEGWNLGLQGGITNEQAPKDVGHGGCGGRLPKYRQVGISLQVEFPETMEDIPGSGDKKQNLPADKVLSIFKNITDADCIALGFNPRWARPDWLILTLIPVPPPHVRPSVAIDGAARGEDDLTHNLASIVKANLALLNCVKKGEPSHIISQFEQLLQFNLSTFVNNEQPGLPQAQQKSGKPLKTMRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMVLMHQLISRGPLEHPGAKYIIREDGNRIDLRYIKSKSELALKCGWIVERHLRDDDYVLFNRQPSLHKMSIMAHRVKVLDWSTFRLNISVTTPYNADFDGDEMNLHVPQSMTARAEAQELMSVHKNIITPQRNAPVMGIVQDSLLGVQKFTKRNIFVEKDLVMNMLMWVYTW----DGKVPTPAILLPDKSQAGQYRPIWTGKQIMSTILPNINFIGYCSTHESDQNKKDCDLPFRRKMSPRDTHVIIQNGELLAGIIDKKTIGPGAGGLIHNTVLELGHDEAKRFLGATQYLVNQWLVWHSFTVGISDTIADVSTLKNIVDIITNAKIKVQDLVVTGQKGKLELQPGRTMIETFEMFVNTVLNSARDQSGREAQGSLDETNNIKATVTSGSKGSYLNISQIIACVGQQNVEGKRIPYGFHHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMSRYDGTVRNSNGEIIQFLYGEDGMDAVWVEKQNFDGHTLNRAKFEAKFKLDPFDDQLGTVPHCPDELYMDPQIITDIQSNPTTQLFLRDEYIQLQKDRLNLRVILGSRGQGQESDQAAQVPVNLRRLIQNAQQLFSISLLHPTTLNPQNIIQGVRDLCREIVVVQGDDHLSIEAQENATLLFQILLRSTLAVKRVLLEYRLNDSAFEWLMGEIKSKFLSSLVAAGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLKPDCAHDAEKAKQIQSTLEYTTLMDVTASTAIYYDPDPTSTVVEEDADFVASYYDVI---DEDTPLARSPWLLRIELNRIMMADKNLEMKEIALQIENEYGQD-LSCIYTDDNADKLVLRIRIMSEEEDKVSQNGSASVGQEDDTFLKRVEHNMLTQMRLRGVPNVKKVFMRENPQNQWDEEKGFIMVKEWVLDTDGTNLLDIICHESIDASRTISNDIVEIIEVLGIEAVRRALLNEIRNVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQLAQLGTGVMDLVLDANKLSQAIEYDASEIENVMREFSKDYTTPD-VNTPMATPWGQTPMYGTPAPGTP----GYGTPGAGSPLMSPSGSFSPFV--------SFSPHNVP--ASPYSQSPGYAQSPGL-NPTSPIYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPSSPAYSPTS 1805

HSP 2 Score: 158.688 bits (400), Expect = 4.792e-35
Identity = 86/144 (59.72%), Postives = 103/144 (71.53%), Query Frame = 0 
Query: 1578 SPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAVGLGSA--SPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSP 1719
            SP  SP   +    +P Y   +  +   +  Y   SPAY     S +SPA    S   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSPSSPAYSP+SPAYSP+SPAYSPSSPAYSP+SP Y+P
Sbjct: 1693 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY-----SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPAYSPTSPAYSPTSPAYSPSSPAYSPASPEYNP 1831
[Close]
BLAST of EWM29618.1 vs. NCBI_GenBank
Match: gi|1173943296|gb|OQR92170.1| (DNA-directed RNA polymerase II largest subunit [Achlya hypogyna])

HSP 1 Score: 1835.85 bits (4754), Expect = 0.000e+0
Identity = 952/1837 (51.82%), Postives = 1239/1837 (67.45%), Query Frame = 0 
Query:    5 FEVSKARVRPVARVQMSVLSPEEIRRMSVTQATTVDRQPLPAGISKAENYFNGRPVYGGVNDPRMGSLDRRDPCKTCGCTYNQVGQRNRVNECPGHFGHIELAKPVYHVGFVDDVLRILRCVCYNCSRLMIDPKDEMVKRILATRRRAARLKALHELCLKGSKRVCVGSPVPEGVSADPLAAAAAAEDQGCG--------------------AMQPVYRREGLRVMVIFPDVAEGGAPNPDRKQYLPAEEAYRIFKNMSDDAVEMLGLDLRWARPEWLLITVFPVPPPHVRPSVVMDGSQRSDDDLTHQLATIVKANLKLLDAKKKGEPRDIQEKLELYLQEKIANFFDNERANADQEKHKSGKVLKTIRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLQIDQVGVPRSIALNLTVPERVTRLNIQELQQLVENGPDVHPGAKYVVRDDGTRQDLRYAPSTSGVALNVGWTVERHMRDDDVVLFNRQPSLHKMSIMGHRVKVLDWSTFRLNLSVTTPYNADFDGDEMNLHLPQTLNARAEAEQIMMVPRNIVSPQANSPVMGIVQDSLLGCSRLTRRDTFVERDVMMNILMWVGSLGIEHQAPVPMPAILKP--------RPLWTGKQVFSLVLPK------GCNHRGNSNMKP---PPKDELNSNDSQVLIQDGEVITGVIDKRSVGNSAGGIIHVTWLDHGWKETARFMIQVQHVVNYWLLQNSFTIGVADTVADTDTLTNIAKEIEIAKGKVRRIVEDAQQGRLEPQPGQTVFSAFEMNVNTLLNSLTERVGEMARNSIDYTNNIVAMILGGSKGNNFNITQIMCCLGQQNVEGKRIPFGFARRSLPHFSKDDYGPESRGFVENSYLKGLTPQEFFFHAMGGREGCIDTAVKTAEVGYIQRRLVKFMESVQAKYDRSVRTVRGSVIQFLYGEDGMDAVWIEKQSLRHLELNRRAFEAKYVLDVLDDSFGQVPGRPGEFYLTESVRTACRRDTATATMLQEELSQLLDDRTRLARVLTARPRGKETDTY--LPVNLDRLITTARRNERITDKTQSDLDPKDVINAIRDLCNKTVVVPGDDAFARTANENATIMFHIFLRSTFAAKRVLYEFRLTSVAFKYILGQVEDHFIQAQVSPGEMAGVQAAQSIGQPATQMTLNTFHLAGVSAKNVTLGVPRLNELLNVAKTVKTPRMSVYMYPDAASDQAKVIRLGQHLEYTTIEDLTLKSEIIYDPDPKTTVVAEDEALLEYWYGVDVDGEAEGEGAASPWVIRIELDKDKVAAKRVQLEDLQALIIDVFGPDTFQIIVSDQNMPRQVLRLRFVPDDEEDV-----------DIEFLKSVEEQIRTKLKVSGYDKILKVYGLTDDIKTWSPETGFSDRKEPYFVTHGVNMMEVMACADVDFTRTTCNDLIEIFETLGIEAARAGMLNEIRSVLFFDGGYINYRHMSILVDVMTFRGALTAVSRHGINRGEQGPLLRASFEETVEVLNQASLFGEYDDVEGVTENILLGRIARVGTGVVELLLDEEKLQ-----DAQEMPELGGGFGVLGGDEDGIGGIGAGVGGATPGTLTPGVATP-YGAFGYGAYGAGGASPGAMLTPGIHLGGGKDLSASPLNASPFVSPMVASPGRATPGYEGGASPFVGAASPYVSASPAYAGGYGSVSSPAV-----GLGSASPAVGGYSPSSPAYSPSSPSYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAYSPSSPAFSPTSPAYTPTSPQYSPTSPAYTPSDIGSPA-GVQEGAYSPSSPVYSPTA 1779
            F  S AR+R V  +Q  V SPEE+R MSVT+   V+ + +P GI++ E + NG+PV GG+ DPRMG+ D R  CKTC CTY+  G   +VN+CPGHFGHIELA+P++HVGF+    +IL C+C++CS+++ D +D   +  +  +    RLKA++E+C   +K +C       G  AD        ED   G                     +QP YR+ G+ + V FP+  E    + DRKQ LPA +   IFKN++D+    LG D +WARP+WL++TV PVPPPHVRPSV +DG  R +DDLTH LA+IVKANL LL+  KKGEP  I  + E  LQ  ++ F +NE+    Q + KSGK LKT+RQRLRGKEGRIRGNLMGKRVDFSARTVITADPNL IDQVGVPRSIA+NLTVPERVT  N+  + +L+  GP  HPGAKY++R+DG R DLRY  S S +AL  GW VERH+RDDD VLFNRQPSLHKMSIM HRVKVLDWSTFRLN+SVTTPYNADFDGDEMNLH+PQ++ ARAEA+++M+V +NI++PQ NSPVMGIVQDSLLG  + T+R+ F+E+D++MN+LMWVG+        VP PAIL P        RPLWTGKQ+FS + P          H+ ++N +    P   +++  D+ V++Q+GE++ G+IDK+++G  AGG+IH T L+ G  E  RF+   Q +VN WL+ +SFT+G+ DT+AD  TL  I   I  AK +V  +V   Q+G LE QPG+T+   FE  VN +LNS  ++ G  A++S+D TNNI A +  GSKG+  NI+QI+ C+GQQNVEGKRIP+GF  R+LPH+ KDD GPESRGFVENSYLKGLTPQEFFFHAMGGREG IDTAVKTAE GYIQRRLVK MESV ++YD +VR  +G +IQFLYGEDGMDAVW+EKQS     L    F+AKY L+  D   G VP  P E Y+   + +  + +  T  +L+EE ++L  DR +L  +L +R  G+E+D    +PVN+ RL+  A++   I+    S L P+ +I  +R+LC   +VV GDD  +  A ENAT++F I +RST A KRVL EFRL   AF++++G+++  F+ + V+ GEMAGV AAQSIG+PATQMTLNTFH AGVSAKNVTLGVPRL E++N+AK VKTP + +Y+  D   D  K   L   LEYTT+ D+T  + I YDPDP +TVV ED+  +  +Y V +D +     A SPW++RIEL++  +A K ++++++ A I   +G D    I +D N  + VLR+R + D+EE +           D  FLK VE  + T++K+ G  KI KV+   + +  W  + GF+ +KE    T G N+++V+   ++D TRT  ND++EI E LGIEA R  +LNEIR+V+ FDG Y+NYRH++ L DVMTFRG L AV+RHGINR + GPL+R SFEETVE+L  A++F + D++ GVTENI+LG++A +GTGV++L+LD +KL      DA EM ++  GF       D            TP  +TP   TP YG  GYG             TPG    G    + SP+N     SPM                   GA SPYVS SPA AG  G ++SPA      GL   SP    YSP+SPAYSP+SP+YSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPAYSP+SPA+SPTSPAY+PTSP YSPTSPAY+P+   SPA      AYSP+SP YSPT+
Sbjct:    6 FSYSSARLRRVEYLQFGVFSPEEVRAMSVTKQIKVNDRIIPDGITRPETFINGQPVIGGIGDPRMGTCDFRARCKTCDCTYS--GSGAKVNDCPGHFGHIELARPMFHVGFIKVCKQILSCICFHCSKVLSDERDHRFRAAMRIKNGQRRLKAVYEIC--KNKSMC-----EYGEEAD---MEKMREDLNIGLQGGLQNEHAPKEGGHGGCGGLQPKYRQVGITLQVEFPEQMEDVPGSGDRKQNLPAAKVLSIFKNITDEGCIALGFDPKWARPDWLVLTVIPVPPPHVRPSVAIDGQARGEDDLTHNLASIVKANLALLNCVKKGEPSHIISQFEQLLQFNLSTFVNNEQPGLPQAQQKSGKPLKTMRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMALMHELIAKGPLEHPGAKYIIREDGNRIDLRYIKSKSDLALKCGWIVERHLRDDDYVLFNRQPSLHKMSIMAHRVKVLDWSTFRLNISVTTPYNADFDGDEMNLHVPQSMTARAEAQELMIVHKNIITPQRNSPVMGIVQDSLLGVQKFTKRNIFIEKDLVMNLLMWVGTW----DGRVPTPAILIPNKQRVGHYRPLWTGKQMFSTICPNINFVSVCSTHQSDANKRDYDLPFHRKVSPRDTHVIVQNGELLAGIIDKKNIGTGAGGLIHNTVLELGHDEAKRFLGATQRLVNCWLVAHSFTVGICDTIADVKTLKQIVDIITNAKIQVSDLVLSGQKGNLELQPGRTMIETFEQFVNKVLNSARDQSGREAQDSLDETNNIKATVTSGSKGSYLNISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAMESVMSRYDGTVRNSQGEIIQFLYGEDGMDAVWVEKQSFDAHRLPPAQFDAKYKLNPGDPLLGCVPHCPEELYMDPLIISDIQTNPHTQQLLREEYAKLGSDREKLRSILASRGPGQESDNVVQVPVNIKRLVQNAQQLFSISTLQPSTLHPRHIIEGVRELCRDIIVVKGDDNLSIEAQENATLLFQILVRSTLAVKRVLLEFRLNDSAFEWLMGEIKSKFLASLVAAGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINIAKDVKTPSIQIYLSGDYQEDAEKAKSLQSQLEYTTLMDVTANTAIYYDPDPTSTVVEEDQEFVASYYDV-IDEDT--PLARSPWLLRIELNRKMMADKNLEMKEIAAQIESEYGQD-LSCIYTDDNADKLVLRIRIMSDEEEKLQRSGEASVGQEDDTFLKRVEHNMLTQMKLRGVPKIKKVFMRENQMTKWDEDKGFTMKKEWILDTDGTNLLDVICFENIDATRTISNDIVEIIEVLGIEAVRRALLNEIRAVISFDGAYVNYRHLACLADVMTFRGHLMAVTRHGINRVDSGPLVRCSFEETVEILMDAAMFSQGDELAGVTENIMLGQLAHLGTGVMDLILDAKKLADAIEYDASEMQQVMHGFAKEWTTPD----------VNTP-MMTPWGQTPMYGTPGYG-------------TPGFQTPGSS--AGSPMN-----SPM-------------------GAFSPYVSFSPASAGSPGYMASPAYVPNSPGLNPTSP---NYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT---SPAYSPTSPAYSPTSPAYSPTS 1766
The following BLAST results are available for this feature:
BLAST of EWM29618.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112189|gb|EWM29618.1|0.000e+0100.00rna polymerase ii largest subunit [Nannochloropsis... [more]
gi|635365757|emb|CCI45926.1|0.000e+052.20unnamed protein product [Albugo candida][more]
gi|301090036|ref|XP_002895253.1|0.000e+052.38DNA-directed RNA polymerase II largest subunit [Ph... [more]
gi|675214245|ref|XP_008916007.1|2.507e-4752.38DNA-directed RNA polymerase II subunit RPB1 [Phyto... [more]
gi|970630928|gb|KUF77727.1|2.507e-4752.13DNA-directed RNA polymerase [Phytophthora nicotian... [more]
gi|970655156|gb|KUF93360.1|3.017e-3452.38hypothetical protein AM588_10004091 [Phytophthora ... [more]
gi|695412681|ref|XP_009525799.1|0.000e+052.26RNA polymerase II large subunit [Phytophthora soja... [more]
gi|570995464|gb|ETP52302.1|2.507e-4752.38DNA-directed RNA polymerase II subunit RPB1 [Phyto... [more]
gi|698787110|ref|XP_009826587.1|4.792e-3552.32hypothetical protein H257_03959 [Aphanomyces astac... [more]
gi|1173943296|gb|OQR92170.1|0.000e+051.82DNA-directed RNA polymerase II largest subunit [Ac... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1101rna1101Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications