EWM29611.1, cds1071 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|585112182|gb|EWM29611.1| (spermidine synthase [Nannochloropsis gaditana]) HSP 1 Score: 676.396 bits (1744), Expect = 0.000e+0 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query: 1 MAAGASDDRQELLNLIKDGWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQVKPRS 325
MAAGASDDRQELLNLIKDGWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQVKPRS
Sbjct: 1 MAAGASDDRQELLNLIKDGWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQVKPRS 325
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|553191250|ref|XP_005855348.1| (spermidine synthase, partial [Nannochloropsis gaditana CCMP526] >gi|422293723|gb|EKU21023.1| spermidine synthase, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 616.69 bits (1589), Expect = 0.000e+0 Identity = 297/297 (100.00%), Postives = 297/297 (100.00%), Query Frame = 0
Query: 29 TGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQVKPRS 325
TGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQVKPRS
Sbjct: 1 TGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQVKPRS 297
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|1173959992|gb|OQS06162.1| (spermidine synthase [Thraustotheca clavata]) HSP 1 Score: 352.058 bits (902), Expect = 3.401e-118 Identity = 169/311 (54.34%), Postives = 216/311 (69.45%), Query Frame = 0
Query: 9 RQELLNLIKDGWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHC-TYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEAR 318
R+ + + WF E ++ W GQ+F L E+VLFH +S +QDVL+F+S +YG VLVLDGVIQ TERDE +YQEMISHLPL++H NP+ VLI+GGGDGGVLREVAKHPS++ I MCEID MV DVSK+F ++TLAT++ DPRLTL+ DDAA ++ ++G+C YD IIVDSSDPVGPAE LF + F++++ ALNP GI+CTQ EC WLHLD I+ V F V+YAYT IPTYPSGQIGF+L C +L R A+ +L++YN +H AAF LP FA +K+ R
Sbjct: 14 RRVVRTMSTTKWFSETEAMWPGQKFCLAQEEVLFHGKSNFQDVLVFKSQTYGNVLVLDGVIQCTERDEFSYQEMISHLPLYSHANPKSVLIVGGGDGGVLREVAKHPSVEKIVMCEIDPMVCDVSKQFFANTLATTFNDPRLTLMHDDAAAYL-RNGNCGKYDVIIVDSSDPVGPAEVLFRSEFYENMKNALNPNGIVCTQGECLWLHLDLIADVLGRVGKFFPTVQYAYTTIPTYPSGQIGFVL---------------CSLDESPNALNKPKRVVDAKTAENLRYYNSKIHEAAFILPSFAEKKIAPVR 308
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|813163968|ref|XP_012203044.1| (spermidine synthase [Saprolegnia parasitica CBS 223.65] >gi|641532309|gb|KDO26346.1| spermidine synthase [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 350.132 bits (897), Expect = 1.175e-117 Identity = 168/300 (56.00%), Postives = 210/300 (70.00%), Query Frame = 0
Query: 20 WFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHC-TYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEAR 318
WF E ++ W GQ+F L E+VLFH +S +QDVL+F+S +YG VLVLDGVIQ TERDE +YQEMISHLPL++H NP+ VLI+GGGDGGVLREVAKHPS++ I MCEID MV DVSK+F +DTLAT++ DPRLTL+ DDAA F+ ++G C YD IIVDSSDPVGPAE LF + F++++ ALNP GI+CTQ EC WLH+D I+ V F V+YAYT IPTYPSGQIGF+L C +L R + +L++YN +H AAF LP FA +K+ R
Sbjct: 6 WFSETEAMWPGQKFCLAQEEVLFHGKSDFQDVLVFKSQTYGNVLVLDGVIQVTERDEFSYQEMISHLPLYSHANPKSVLIVGGGDGGVLREVAKHPSVEKIVMCEIDPMVCDVSKKFFADTLATTFNDPRLTLMHDDAAAFL-RNGDCGKYDVIIVDSSDPVGPAEVLFRSEFYENMKNALNPNGIVCTQGECLWLHIDLIADVLGRVGGFFPTVQYAYTTIPTYPSGQIGFVL---------------CSLDESPNALNKPKRIVDEKTAENLRYYNSKIHEAAFVLPSFAEKKIAPVR 289
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|298706538|emb|CBJ29508.1| (spermidine/spermine synthase [Ectocarpus siliculosus]) HSP 1 Score: 349.747 bits (896), Expect = 1.430e-117 Identity = 169/303 (55.78%), Postives = 219/303 (72.28%), Query Frame = 0
Query: 16 IKDGWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEAR 318
IKDGWF E + W GQ+FSL+V++VLFH RS +QDVL+F S YGKVLVLDGVIQ TERDE +YQEM++H+P FA +P+KVLI+GGGDGGVLRE+A+HP ++TIHMCEID MV +VSK F T A+++ D RL LV +DAA+FV ++G+ YD IIVDSSDPVGPAE LF+ +F+Q++ +AL P G+I TQ EC WLHL I+ V RAC +IF V+YA+T +P+YPSGQIGF+L S E D L A TP+A + L++Y+P +H AAF LP FA +++ R
Sbjct: 3 IKDGWFSETEVLWPGQKFSLEVKEVLFHERSDFQDVLVFDSVHYGKVLVLDGVIQLTERDECSYQEMLTHIPCFAQGHPKKVLIVGGGDGGVLREIARHPGVETIHMCEIDSMVCEVSKRFEFCT-ASAFGDARLKLVHEDAAEFVKKEGNNGYDVIIVDSSDPVGPAETLFQPSFYQNMKQALAPMGVIATQGECLWLHLPLITTVLRACAEIFGSVDYAFTTVPSYPSGQIGFVL------ASVEERD-----------LSTPASTPNAAMTEVLRYYSPEVHQAAFVLPVFAEKEIAGVR 287
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|669147204|ref|XP_008609164.1| (spermidine synthase [Saprolegnia diclina VS20] >gi|669147206|ref|XP_008609165.1| spermidine synthase, variant [Saprolegnia diclina VS20] >gi|530739402|gb|EQC37644.1| spermidine synthase [Saprolegnia diclina VS20] >gi|530739403|gb|EQC37645.1| spermidine synthase, variant [Saprolegnia diclina VS20]) HSP 1 Score: 350.132 bits (897), Expect = 3.302e-117 Identity = 166/300 (55.33%), Postives = 211/300 (70.33%), Query Frame = 0
Query: 20 WFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHC-TYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEAR 318
WF E ++ W GQ+F L E+VLFH +S +QDVL+F+S +YG VLVLDGVIQ TERDE +YQEMISHLPL++H NP+ VLI+GGGDGGVLREVAKHPS++ I MCEID MV DVSK+F +++LAT++ DPRLTL+ DDAA ++ ++G C YD IIVDSSDPVGPAE LF + F++++ ALNP GI+CTQ EC WLH+D I+ V F V+YAYT IPTYPSGQIGF+L C +L R + A+L++YN +H AAF LP FA +K+ R
Sbjct: 34 WFSETEAMWPGQKFCLAQEEVLFHGKSDFQDVLVFKSQTYGNVLVLDGVIQVTERDEFSYQEMISHLPLYSHANPKSVLIVGGGDGGVLREVAKHPSVEKIVMCEIDPMVCDVSKQFFANSLATTFNDPRLTLMHDDAAAYL-RNGQCGKYDVIIVDSSDPVGPAEVLFRSEFYENMKNALNPNGIVCTQGECLWLHIDLIADVLGRVGQFFPTVQYAYTTIPTYPSGQIGFVL---------------CSLDESPNALNKPKRIVDEKTAANLRYYNSKIHEAAFVLPSFAEKKIAPVR 317
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|953500045|emb|CEG38686.1| (spermidine synthase [Plasmopara halstedii]) HSP 1 Score: 348.977 bits (894), Expect = 3.496e-117 Identity = 161/299 (53.85%), Postives = 214/299 (71.57%), Query Frame = 0
Query: 20 WFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEAR 318
WF E ++ W GQ+F+LQVEKVLF +S +QDVL+F+ST+YG VLVLDGVIQ TERDE AYQEMI+HLP+FAH P++VLI+GGGDGGVLREV KH ++ I MCEID MV DVSK+F ++T+AT++ DPR+TL+ DAA ++ ++ +D +IVDSSDPVGPAE L++A F+QS+ AL+P G+ICTQ EC WLHLD I V + C +F+ V YAY+ IPTYPSGQIGF++ G S+ RTP A++ +L++Y+ +H A+F LP FA +K+ R
Sbjct: 11 WFSETEAMWPGQKFALQVEKVLFQGKSDFQDVLVFKSTTYGNVLVLDGVIQLTERDEFAYQEMITHLPMFAHKQPKRVLIVGGGDGGVLREVIKHDCVEEIIMCEIDSMVCDVSKKFFTETVATAFNDPRVTLLHADAALYLHENTTNKFDVVIVDSSDPVGPAEVLYKAEFYQSMKNALSPDGVICTQGECLWLHLDLIVDVMQRCQSLFSTVNYAYSTIPTYPSGQIGFIMCSSG------------------QSVDKPKRTPDAKMSKTLRYYSAKIHEASFVLPGFAEQKIATVR 291
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|1173935960|gb|OQR86998.1| (spermidine synthase [Achlya hypogyna]) HSP 1 Score: 347.821 bits (891), Expect = 2.602e-116 Identity = 166/300 (55.33%), Postives = 211/300 (70.33%), Query Frame = 0
Query: 20 WFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHC-TYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEAR 318
WF E ++ W GQ+F L E+VL+H +S +QDVL+F+S +YG VLVLDGVIQ TERDE +YQEMISHLPL++H NP+ VLI+GGGDGGVLREVAKHPS++ I MCEID MV DVSK++ +++LAT++ DPRLTL+ DDAA ++ ++G C YD IIVDSSDPVGPAE LF + F++++ KALNP GI+CTQ EC WLHLD I+ V F V+YAYT IPTYPSGQIGF+L C +L RT + L++YN +H AAF LP FA +K+ R
Sbjct: 35 WFSETEAMWPGQKFCLAQEEVLYHGKSDFQDVLVFKSQTYGNVLVLDGVIQCTERDEFSYQEMISHLPLYSHANPKSVLIVGGGDGGVLREVAKHPSVEKIVMCEIDPMVCDVSKKYFANSLATTFNDPRLTLMHDDAAAYL-RNGQCGKYDVIIVDSSDPVGPAEVLFRSEFYENMKKALNPNGIVCTQGECLWLHLDLIADVLGRVGQFFPTVQYAYTTIPTYPSGQIGFVL---------------CSLDESPNALSKPKRTVDPKTAEELRYYNSKIHEAAFVLPSFAEKKIAPVR 318
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|676389231|ref|XP_009037894.1| (hypothetical protein AURANDRAFT_59112 [Aureococcus anophagefferens] >gi|323451384|gb|EGB07261.1| hypothetical protein AURANDRAFT_59112 [Aureococcus anophagefferens]) HSP 1 Score: 346.665 bits (888), Expect = 3.629e-116 Identity = 172/308 (55.84%), Postives = 216/308 (70.13%), Query Frame = 0
Query: 17 KDGWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLV----------VDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFTEVEYAYTAIPTYPSGQIGFMLLYKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKL 314
K+ WF E + W GQRFSL+V +VL H+RSA+QD+L+FQS +YG+VLVLDGVIQ TERDE AYQEMI+HLPLF+HP P++VLI+GGGDGGVLREVA+H ++TI MCEID V++VSK+F +++ AT+Y D RLTLV A+ T G YD IIVDSSDPVGPAE LFE AF+ S+ AL PGG +CTQ EC WLHL ISKV AC D+F VEYAYT +PTYPSGQIGF++ + D+ + ++P+ R P +Q LK+Y+P +H AAF LP FA R+L
Sbjct: 7 KENWFAESEVMWPGQRFSLKVGEVLHHSRSAFQDILVFQSETYGRVLVLDGVIQLTERDEFAYQEMIAHLPLFSHPEPKRVLIVGGGDGGVLREVARHACVETIDMCEIDAGVVEVSKKFFAESTATAYGDARLTLVHADAAADPAVAAALARRQTPGGWPGYDVIIVDSSDPVGPAETLFEPAFYDSMRAALAPGGAVCTQGECMWLHLPLISKVVSACRDLFPTVEYAYTCVPTYPSGQIGFIM--------CSLDESRHALVKPV-------RAPVGHLQDQLKYYSPDVHAAAFVLPPFAEREL 299
BLAST of EWM29611.1 vs. NCBI_GenBank
Match: gi|1109059813|ref|XP_010460158.2| (PREDICTED: spermidine synthase 1 [Camelina sativa]) HSP 1 Score: 347.436 bits (890), Expect = 4.041e-115 Identity = 172/304 (56.58%), Postives = 215/304 (70.72%), Query Frame = 0
Query: 19 GWFEERQSFWTGQRFSLQVEKVLFHARSAYQDVLLFQSTSYGKVLVLDGVIQATERDEMAYQEMISHLPLFAHPNPRKVLIIGGGDGGVLREVAKHPSIDTIHMCEIDKMVIDVSKEFMSDTLATSYEDPRLTLVVDDAAKFVTQDGHCTYDCIIVDSSDPVGPAEALFEAAFFQSLHKALNPGGIICTQAECQWLHLDFISKVYRACCDIFT-EVEYAYTAIPTYPSGQIGFMLL-YKGPETSAAEDDGKCDDLRPLTSLRVAARTPSAEVQASLKFYNPALHTAAFALPEFARRKLDEARAQ 320
GWF E W G+ SL+VEKVLF +S YQDV++FQS +YGKVLVLDGVIQ TERDE AYQEMI+HLPL + PNP+KVL+IGGGDGGVLREVA+HPS++ I MCEIDKMV+DVSK+F D +A YEDPR+ LV+ D F+ +YD +IVDSSDP+GPA+ LFE FFQS+ +AL PGG++CTQAE WLH+D I + C +IF V YA+T++PTYPSG IGFML +GPE D PL + + S++ LKFYN +H+AAF LP FA RK+ E++A
Sbjct: 103 GWFSEMSPMWPGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHPSVEHIDMCEIDKMVVDVSKQFFPD-VAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPEV---------DFKHPLNPIDES----SSKSNGPLKFYNAEIHSAAFCLPSFA-RKVIESKAN 391 The following BLAST results are available for this feature:
BLAST of EWM29611.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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