EWM29527.1, cds1068 (CDS) Nannochloropsis gaditana

Overview
NameEWM29527.1
Unique Namecds1068
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1114985..1115017 +
Alignment locationCM002456.1:1115170..1115631 +
Alignment locationCM002456.1:1115818..1116694 +
Alignment locationCM002456.1:1116884..1116919 +
Alignment locationCM002456.1:1117124..1117929 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29527.1
Productdna repair rad54-like protein
Orig transcript idgnl|cribi|Naga_100006g99.8616.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1114985..1115017 +
CM002456.1supercontigCM002456.1:1115170..1115631 +
CM002456.1supercontigCM002456.1:1115818..1116694 +
CM002456.1supercontigCM002456.1:1116884..1116919 +
CM002456.1supercontigCM002456.1:1117124..1117929 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N
IPR027417P-loop_NTPase
IPR014001Helicase_ATP-bd
IPR001650Helicase_C
Homology
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|585112098|gb|EWM29527.1| (dna repair rad54-like protein [Nannochloropsis gaditana])

HSP 1 Score: 1510.74 bits (3910), Expect = 0.000e+0
Identity = 737/737 (100.00%), Postives = 737/737 (100.00%), Query Frame = 0
Query:    1 MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVRCETYDLLRSGGGRAEGKREWKDYTGPKDIPDACLRSVVEAQGTGGSMVNFVHEEEDGRGEEEDKEKKRGDDEGDGDMGLDSRLVHEEDAVEDEEVSGFGGSVAVAGSDEAAIRKRKRIVVSCETESDDEFESIDGRSGEKDSGRGAAMGPTSEGGSRDAEEGYDMEEEEEWETLMNS 737
            MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVRCETYDLLRSGGGRAEGKREWKDYTGPKDIPDACLRSVVEAQGTGGSMVNFVHEEEDGRGEEEDKEKKRGDDEGDGDMGLDSRLVHEEDAVEDEEVSGFGGSVAVAGSDEAAIRKRKRIVVSCETESDDEFESIDGRSGEKDSGRGAAMGPTSEGGSRDAEEGYDMEEEEEWETLMNS
Sbjct:    1 MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVRCETYDLLRSGGGRAEGKREWKDYTGPKDIPDACLRSVVEAQGTGGSMVNFVHEEEDGRGEEEDKEKKRGDDEGDGDMGLDSRLVHEEDAVEDEEVSGFGGSVAVAGSDEAAIRKRKRIVVSCETESDDEFESIDGRSGEKDSGRGAAMGPTSEGGSRDAEEGYDMEEEEEWETLMNS 737          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|553191247|ref|XP_005855347.1| (DNA repair and recombination protein RAD54 and RAD54-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293722|gb|EKU21022.1| DNA repair and recombination protein RAD54 and RAD54-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 914.064 bits (2361), Expect = 0.000e+0
Identity = 446/446 (100.00%), Postives = 446/446 (100.00%), Query Frame = 0
Query:   12 GLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFL 457
            GLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFL
Sbjct:    1 GLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFL 446          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|749763656|gb|KII88390.1| (hypothetical protein PLICRDRAFT_161431 [Plicaturopsis crispa FD-325 SS-3])

HSP 1 Score: 394.815 bits (1013), Expect = 3.310e-122
Identity = 238/568 (41.90%), Postives = 328/568 (57.75%), Query Frame = 0
Query:    4 GAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWL-QVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHST--VLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKS---AGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVRCETYD 565
            G I+AD+MGLGKTLQ IALLW L +QSP   R   +EK ++ CP++L+  WA EL KWL +  L+ + +D   GK   K D    V  +  + G++ T  V+ +SYE  R  +A L  C  IGLL+CDE HRLK   S T  AL+    + R+ LTGTP+QNDL E++SL++F NP  LG    FR N+   I+R RD +A+   K+  EQ+ +E+  LV++F +RRT   +L   +P K   VVFC L+P Q  LY+  +    +  ++      A +  LK I+ L+K+CNHP             D+  +  G    SES I                E   G +KSG   GG  S    GG     +RC  G  GK  V E  L  I  +T D++V+ S+YT +LD+ + LC+++ +   RLDG++SI++R  LV+ FN   G     KE  F+FLLS++AGG G+NL+G NRLILFD  +NP+AD QA ARVWRDGQ+K C +YR +S GT+EEK+FQRQ  K+ L S +V+      R+FS D LRKLF L      CET+D
Sbjct:  255 GCIMADEMGLGKTLQCIALLWTLLKQSPHPGR-PSIEKCIIACPATLVKNWANELVKWLGKDALTCLAID---GKG-TKADMLAAVARWVAARGRNVTQPVMIVSYETLRTLSAHLAGCS-IGLLLCDEGHRLKNSESLTFQALSTLDVRRRVILTGTPIQNDLSEYFSLLNFANPNFLGSKDDFRKNFEHAIIRGRDAEATDAIKEKSEQKLKELGGLVTKFIIRRT-NDLLSKYLPVKYEQVVFCGLSPFQLSLYRLFISSPEIKALLRG----ADSQPLKAINILKKLCNHPELL----------DLPNDLHG----SESLI---------------PEGFVGANKSGGKSGGTTSRDRNGGGRNQGVRCDWG--GKFVVLERFLHKIRTETTDKIVLISNYTQTLDLFEKLCRSKQYGCFRLDGTMSITKRQKLVDQFNDPNG-----KE--FIFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKECFVYRFISTGTIEEKIFQRQAQKQALSSAVVDEMEDAERHFSVDSLRKLF-LFNEQTLCETHD 772          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|67624313|ref|XP_668439.1| (DNA repair protein RAD54-like [Cryptosporidium hominis TU502] >gi|961505696|emb|CUV04061.1| unnamed protein product [Cryptosporidium hominis] >gi|1129250636|gb|OLQ18568.1| SNF2 family N-terminal domain [Cryptosporidium hominis])

HSP 1 Score: 391.349 bits (1004), Expect = 1.966e-120
Identity = 242/622 (38.91%), Postives = 333/622 (53.54%), Query Frame = 0
Query:    2 GRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFC-TSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHE----PAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKK-------SAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHE--TRNFSPDELRKLFVLAGPHV----------RC-----ETYDLLRSGGGRAEGKREWKDYTGPKDIPDACL 594
            G G ILADDMGLGKTLQ+I +LW L  Q  F  +   V KAVVVCP+SL+  WA+E++KWLQ +     V         + D ++ V+ F        S +L  SYE +R+H   L+    I L+ICDEAHRLK   +KT +A+   PA+ RL L+GTP+QNDL EFYSLV   NP VLG +S F+  Y +PIL  R+P AS   ++   QR +E+  + + F LRR A  +L  ++PPK  L +FC L P+Q  LY+  +R      ++  +    P   +   L  I +L K+CNHP    T + P+ S   G+  EG    SE  +  I                 G S SG+ GG  K       S     RT       +SGKL +   LL  I + T DRVV+ S+YT +LD+ + LC+      +RLDGS SI++RH LV+ FN           + F FLLS++AGG G+NL+G NRL++FD  +NP+ D QA ARVWRDGQ+K C +YRL S GT+EEK++QRQ+ K  L + LV +  +     + S D +R LF L    +          RC     +  D++    G  +    W  Y    +IPD  L
Sbjct:  160 GNGCILADDMGLGKTLQSITILWTLLNQG-FDGK-PSVRKAVVVCPASLVKNWASEIEKWLQGKCKCTPV--------AERDREKVVSAFAGFKYDTMSRILIASYETFRMHVEQLDGVP-IDLVICDEAHRLKNDKTKTAMAINNLPAKKRLLLSGTPIQNDLVEFYSLVSLANPQVLGDVSQFKKIYANPILEGREPDASEYQQELATQRLQELSNITNHFILRR-ANTLLAKVLPPKIILNIFCNLTPIQNYLYRRFLRSSACKKLLDSDSTGNPTGLTGQVLSSIQSLMKLCNHP----TLIRPKTSGGYGKGFEG----SEKYLEMI----------------HGRSASGESGGEYKKRVTVGSSIRNSNRTGFSSKPNLSGKLYLLSRLLFHIRSNTKDRVVLVSNYTQTLDVFECLCRDLQVPCVRLDGSTSITRRHNLVKTFN-------DPNSNSFAFLLSSKAGGCGINLIGANRLVMFDPDWNPANDKQALARVWRDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTSGGNNELKDSISADLVRDLFTLKEDTISDTHDMIQCNRCHDSSGQPLDMVPQTTGLEDDLNTWGHYHSFSEIPDEIL 738          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|1098426461|gb|OII74562.1| (RAD54 like SWI SNF2 ATPase [Cryptosporidium ubiquitum])

HSP 1 Score: 390.963 bits (1003), Expect = 2.225e-120
Identity = 245/623 (39.33%), Postives = 338/623 (54.25%), Query Frame = 0
Query:    2 GRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFC-TSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHE----PAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKK---SAGGQTRTSLRCPI----GMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHE--TRNFSPDELRKLFVLAGPHVRCETYDLLR------SGG----------GRAEGKREWKDYTGPKDIPDACL 594
            G G ILADDMGLGKTLQ+I +LW L  Q  F  +   V KAVVVCP+SL+  WA+E++KWLQ +     V         + D ++ V+ F        S +L  SYE +R+H   L+    I L+ICDEAHRLK   +KT +A+   PA+ RL L+GTP+QNDL EFYSLV   NP VLG +S F+  Y +PIL  R+P AS   ++   QR +E+  + + F LRR A  +L  ++PPK  L +FC L P+Q  LY+  +R      ++  E    P   +   L  I +L K+CNHP      + P+ S   G+  EG    SE  +  I                 G S SG+ GG  K   +AG   R S R        +SGKL +   LL  I + T DRVV+ S+YT +LD+ + LC+      +RLDGS SI++RH LV+ FN           + F FLLS++AGG G+NL+G NRL++FD  +NP+ D QA ARVWRDGQ+K C +YRL S GT+EEK++QRQ+ K  L + LV +  +     + S D +R LF L    +  +T+D+++      S G          G  +    W  Y    +IPD  L
Sbjct:  159 GNGCILADDMGLGKTLQSITILWTLLNQG-FDGK-PSVRKAVVVCPASLVKNWASEIEKWLQGKCKCTPV--------AERDREKVVSAFAGFKYDTMSRILIASYETFRMHVEQLDGVP-IDLVICDEAHRLKNDKTKTAMAINNLPAKKRLLLSGTPIQNDLVEFYSLVSLANPQVLGDVSQFKKIYANPILEGREPDASEYQQELATQRLQELSNITNHFILRR-ANTLLAKVLPPKIILNIFCNLTPIQNYLYRRFLRSSACRKLLDSESTGNPTGLTGQVLSSIQSLMKLCNHPSL----IRPKTSGGYGKGFEG----SEKYLEMI----------------HGRSYSGESGGDYKKRIAAGSSMRNSSRTGFSSKPNLSGKLYLLSRLLFHIRSNTKDRVVLVSNYTQTLDVFECLCRDLQVPCVRLDGSTSITRRHNLVKTFN-------DPNSNSFAFLLSSKAGGCGINLIGANRLVMFDPDWNPANDKQALARVWRDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTSGGNNELKDSISADLVRDLFTLKEDTIS-DTHDMIQCNRCYDSNGQLMNMVPQTTGLEDDLNTWGHYHSFSEIPDEIL 737          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|662527586|gb|KEQ84965.1| (hypothetical protein M438DRAFT_255866, partial [Aureobasidium pullulans EXF-150])

HSP 1 Score: 389.423 bits (999), Expect = 3.776e-120
Identity = 226/570 (39.65%), Postives = 327/570 (57.37%), Query Frame = 0
Query:    1 MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWL-QVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVR--CETYDLL 567
            +G GAILAD+MGLGKTLQTIAL+W L +Q+P       ++KA++VCP +L+N W  E KKWL   ++  MV +          + K +++ F  + G+   +L I YE  R     L     + ++I DE HRLK   +K+ VA+ +   + R+ L+GTP+QNDL EFY++VDFVNPG+L   SSF+  Y SPIL++R P A++   + G+  + E+ ++  +F LRRT A +L   +PPKT  VV+CR   VQ+ +Y+ VV  G++   +      +S    +MI+ L+K+CN P              I    EG  G  +S + K+        A DL                 +SAGG            S KL V +E L  +  +T ++VVV S+YT +LDM+  L  A  +  LRLDGS     R GLV+ FNR +        + FVFLLS +AGG GLNL+G +RL+LFD  +NP+ DLQA  RV RDGQ+ P  +YR L+ G +EEK+FQRQ++K+ L  ++V+N A+ + +FSP+ELR LF L    +R  C+T+DLL
Sbjct:  230 VGEGAILADEMGLGKTLQTIALVWTLLKQNPIYEDGPVIKKALIVCPVTLINNWRKEFKKWLGNEKVGVMVAE----------NNKTRLSDF--TKGKSYNILIIGYEKLRNVQEELQQGIGVDIVIADEGHRLKTANNKSAVAIKSLNTERRIILSGTPIQNDLSEFYTMVDFVNPGLLKTYSSFKKQYESPILKSRTPGATAKDIEKGQACSEELASITGQFILRRT-AEILSKYLPPKTEYVVYCRPTQVQKDVYEAVVSTGVLNIALK-----SSESAFQMINVLKKLCNSPKLL-----------IKDAAEGEEGTVKSLLSKV-------PAKDL-----------------QSAGG------------SSKLQVLDEFLHLVRTKTQEKVVVVSNYTATLDMIGKLLTAMEYPHLRLDGSTPAKDRQGLVDKFNRTSA------NNCFVFLLSAKAGGVGLNLIGASRLVLFDIDWNPATDLQAMGRVHRDGQKHPVHIYRFLTKGALEEKIFQRQLTKQGLADSIVDNKANAS-SFSPEELRDLFTL---DLREGCQTHDLL 724          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|662500320|gb|KEQ57964.1| (hypothetical protein M437DRAFT_10207, partial [Aureobasidium melanogenum CBS 110374])

HSP 1 Score: 387.497 bits (994), Expect = 4.869e-120
Identity = 221/568 (38.91%), Postives = 326/568 (57.39%), Query Frame = 0
Query:    1 MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWL-QVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVRCETYDLL 567
            +G GAILAD+MGLGKTLQTIAL+W L +Q+P       ++KA++VCP +L+N W  E KKWL   ++  MV +          + K +++ F  + G+   +L I YE  R     L     + ++I DE HRLK   +K+  A+ +   + R+ L+GTP+QNDL EF+++VDFVNPG+L   SSF+  Y  PIL++R P A++   + G+  + E+ ++  +F LRRT A +L   +PPKT  VV+CR   VQ+ +Y+ VV  G++  V+    A       +MI+ L+K+CN P                   EG  G   S + K+        A+DL                 K+AGG            S KL V ++LL  ++  T ++VVV S+YT +LDM+  L  +  +  LRLDGS   +QR GLV+ FNR +       ++ FVFLLS +AGG GLNL+G +RL+LFD  +NP+ DLQA  RV RDGQ+ P  +YR L+ G +EEK+FQRQ++K+ L  ++V+N A+ + +F+P+ELR LF L      C+T+DLL
Sbjct:  231 VGEGAILADEMGLGKTLQTIALIWTLLKQNPIYEDGPVIKKALIVCPVTLINNWRKEFKKWLGNEKVGVMVAE----------NNKTRLSDF--TKGKSYNILIIGYEKLRNVQEELQQGLGVDIVIADEGHRLKTANNKSAAAIKSLNTERRIILSGTPIQNDLSEFFTMVDFVNPGLLKTYSSFKKQYEIPILKSRTPGATAKDIEKGQACSEELASITGQFILRRT-AEILSKYLPPKTEYVVYCRPTRVQKDVYEAVVSTGVLNQVLKSNEA-----AFQMINILKKLCNSPSLLKN------------PSEGEEGTVNSLLAKV-------PASDL-----------------KAAGG------------SSKLGVLDDLLHCVHTMTQEKVVVVSNYTATLDMIGKLLTSLEYPYLRLDGSTPANQRQGLVDKFNRTSA------KNCFVFLLSAKAGGVGLNLIGASRLVLFDIDWNPATDLQAMGRVHRDGQKHPVHIYRFLTKGALEEKIFQRQLTKQGLADSIVDNKANAS-SFTPEELRDLFTLDS-REGCQTHDLL 724          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|66361996|ref|XP_627962.1| (RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II] >gi|46227534|gb|EAK88469.1| RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum Iowa II])

HSP 1 Score: 389.808 bits (1000), Expect = 7.123e-120
Identity = 263/747 (35.21%), Postives = 378/747 (50.60%), Query Frame = 0
Query:    2 GRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWLQVRLSFMVVDSAMGKALGKGDAKEQVNTFC-TSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHE----PAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKK-------SAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHE--TRNFSPDELRKLFVLAGPHV----------RC-----ETYDLLRSGGGRAEGKREWKDYTGPKDIPDACL------------RSVVEAQG---------TGGSMVNFV-------HEEEDGRGEEEDKEKKRGDDEGDGDMGLDSRLVHEEDAVEDEEVSGFGGSVAVAGSDEAAIRKRKRIVVSCETESDDEFE 691
            G G ILADDMGLGKTLQ+I +LW L  Q  F  +   V KAVVVCP+SL+  WA+E++KWLQ +     V         + D ++ V+ F        S +L  SYE +R+H   L+    I L+ICDEAHRLK   +KT +A+   PA+ RL L+GTP+QNDL EFYSLV   NP VLG +S F+  Y +PIL  R+P AS   ++   QR +E+  + + F LRR A  +L  ++PPK  L +FC L P+Q  LY+  +R      ++  +    P   +   L  I +L K+CNHP    T + P+ S   G+  EG    SE  +  I                 G S SG+ GG  K       S     RT       +SGKL +   LL  I + T DRVV+ S+YT +LD+ + LC+      +RLDGS SI++RH LV+ FN           + F FLLS++AGG G+NL+G NRL++FD  +NP+ D QA ARVWRDGQ+K C +YRL S GT+EEK++QRQ+ K  L + LV +  +     + S D +R LF L    +          RC     +  D++    G  +    W  Y    +IPD  L            +  V+ +G         +    V+FV        ++ED + +E + EK    D+ + +   D+ + + +D   D  +S     + + G   +   KR +     E +   EF+
Sbjct:  160 GNGCILADDMGLGKTLQSITILWTLLNQG-FDGK-PSVRKAVVVCPASLVKNWASEIEKWLQGKCKCTPV--------AERDREKVVSAFAGFKYDTMSRILIASYETFRMHVEQLDGVP-IDLVICDEAHRLKNDKTKTAMAINNLPAKKRLLLSGTPIQNDLVEFYSLVSLANPQVLGDVSQFKKIYANPILEGREPDASEYQQELATQRLQELSNITNHFILRR-ANTLLAKVLPPKIILNIFCNLTPIQNYLYRRFLRSSACKKLLDSDSTGNPTGLTGQVLSSIQSLMKLCNHP----TLIRPKTSGGYGKGFEG----SEKYLEMI----------------HGRSVSGESGGEYKKRVTIGSSIRNSNRTGFSSKPNLSGKLYLLSRLLFHIRSNTKDRVVLVSNYTQTLDVFECLCRDLQVPCVRLDGSTSITRRHNLVKTFN-------DPNSNSFAFLLSSKAGGCGINLIGANRLVMFDPDWNPANDKQALARVWRDGQKKNCYIYRLFSTGTIEEKIYQRQLCKDGLSAMLVTSGGNNELKDSISADLVRDLFTLKEDTISDTHDMIQCNRCHDSNGQPLDMVPQTTGLEDDLNTWGHYHSFSEIPDEILSLTLNECSNETNKMAVDMEGEKPHPLELPSDFQPVSFVMACRIELQDQEDEQTKESNGEKPMEVDKENYNK--DNTICNIDDTRTDNSISPVNPVINIFGGHVSPDAKRIKDSNGSEDDYASEFD 861          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|597907640|ref|XP_007301119.1| (SNF2 family domain-containing protein [Stereum hirsutum FP-91666 SS1] >gi|389748911|gb|EIM90088.1| SNF2 family domain-containing protein [Stereum hirsutum FP-91666 SS1])

HSP 1 Score: 387.497 bits (994), Expect = 1.442e-119
Identity = 231/568 (40.67%), Postives = 329/568 (57.92%), Query Frame = 0
Query:    4 GAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWL-QVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHST--VLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVRCETYDLLR 568
            G I+AD+MGLGKTLQ IALLW L +QSP   +   +EK ++ CPSSL+  WA EL KWL +  ++ M VD   GK  GK +  ++V  +  +SG++ T  V+ +SYE  R     LN CQ IGLL+CDE HRLK   S T  AL A   + R+ L+GTP+QNDL E++SL++F NP +LG  + FR N+ + I+R RD  A+   K   E++ +E+  LVS+F +RRT   +L   +P K   VVFC L+  Q +LY+  +    +  ++      A +  LK I+ L+K+CNHP   +        + +  EG                      A D     KGGS+ G      + AG    T        SGK  V E  L  ++ +T D++V+ S+YT +LD+ + + +++ +   RLDG+++I +R  LV+ FN   G     KE  FVFLLS++AGG G+NL+G NRLILFD  +NP+AD QA ARVWRDGQ+K C +YR +S GT+EEK+FQRQ SK+ L S +V+      R+FS D LR+LF L      CET++  +
Sbjct:  250 GCIMADEMGLGKTLQCIALLWTLLKQSPRSGK-GTLEKCIIACPSSLVKNWANELAKWLGKDTITPMAVD---GKG-GKAELLQRVERWVAASGRNVTQPVMIVSYETLRTLTVYLNGCQ-IGLLLCDEGHRLKNSESLTFQALDAINVKRRVILSGTPIQNDLSEYFSLLNFANPNLLGTKNDFRKNFENIIIRGRDADATDKDKAECEKKLKELGELVSKFIIRRT-NDLLSKYLPVKYEQVVFCGLSDFQLQLYRLFISSPEIKALLRG----AESQPLKAINILKKLCNHPELLNLPQDLRGCDHLIPEG-------------------FCGAGDDSNKPKGGSRGG------RDAGQNVHTE------WSGKFIVLERFLHRLHTETNDKIVLISNYTQTLDIFEKMLRSKKYGYFRLDGTMNIPKRQKLVDQFNNPEG-----KE--FVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKECFVYRFISTGTIEEKIFQRQASKQALSSAVVDEKEDAERHFSIDSLRQLF-LFNEKTLCETHETFK 767          
BLAST of EWM29527.1 vs. NCBI_GenBank
Match: gi|1041761806|gb|OBW66656.1| (hypothetical protein AUREO_032740 [Aureobasidium pullulans])

HSP 1 Score: 388.652 bits (997), Expect = 8.962e-119
Identity = 225/570 (39.47%), Postives = 327/570 (57.37%), Query Frame = 0
Query:    1 MGRGAILADDMGLGKTLQTIALLWALTRQSPFQHRYADVEKAVVVCPSSLLNQWAAELKKWL-QVRLSFMVVDSAMGKALGKGDAKEQVNTFCTSSGQHSTVLFISYEGYRIHAAALNACQQIGLLICDEAHRLKEGASKTLVALAASPAQARLALTGTPVQNDLEEFYSLVDFVNPGVLGPLSSFRSNYISPILRARDPKASSVTKQCGEQRTREVMALVSRFFLRRTAAAVLKTLIPPKTSLVVFCRLAPVQRKLYQEVVRIGLMPGVMGHEPAVASALGLKMIDALRKICNHPCFFSTEVSPERSEDIGREGEGRGGLSESAIIKILRTTRSNSAADLDEDKKGGSKSGKMGGGKKSAGGQTRTSLRCPIGMSGKLAVTEELLEAIYAQTADRVVVCSSYTLSLDMLQDLCQARGWHVLRLDGSVSISQRHGLVEAFNRGAGCPAREKEDPFVFLLSTRAGGQGLNLVGGNRLILFDSCFNPSADLQAQARVWRDGQRKPCVLYRLLSAGTMEEKVFQRQISKRELHSTLVENTAHETRNFSPDELRKLFVLAGPHVR--CETYDLL 567
            +G GAILAD+MGLGKTLQTIAL+W L +Q+P       ++KA++VCP +L+N W  E KKWL   ++  MV +          + K +++ F  + G+   +L I YE  R     L     + ++I DE HRLK   +K+ +A+ +   + R+ L+GTP+QNDL EFY++VDFVNPG+L   SSF+  Y SPIL++R P A++   + G+  + E+ ++  +F LRRT A +L   +PPKT  VV+CR   VQ+ +Y+ VV  G++   +      +S    +MI+ L+K+CN P              I    EG  G  +S + K+        A DL                 +SAGG            S KL V +E L  +  +T ++VVV S+YT +LDM+  L  A  +  LRLDGS     R GLV+ FNR +        + FVFLLS +AGG GLNL+G +RL+LFD  +NP+ DLQA  RV RDGQ+ P  +YR L+ G +EEK+FQRQ++K+ L  ++V+N A+ + +FSP+ELR LF L    +R  C+T+DLL
Sbjct:  298 VGEGAILADEMGLGKTLQTIALVWTLLKQNPIYEDGPVIKKALIVCPVTLINNWRKEFKKWLGNEKVGVMVAE----------NNKTRLSDF--TKGKSYNILIIGYEKLRNVQEELQQGIGVDIVIADEGHRLKTANNKSAMAIKSLNTERRIILSGTPIQNDLSEFYTMVDFVNPGLLKTYSSFKKQYESPILKSRTPGATAKDIEKGQACSEELASITGQFILRRT-AEILSKYLPPKTEYVVYCRPTQVQKDVYEAVVSTGVLNIALK-----SSESAFQMINVLKKLCNSPKLL-----------IKDAAEGEEGTVKSLLSKV-------PAKDL-----------------QSAGG------------SSKLQVLDEFLHLVRTKTQEKVVVVSNYTATLDMIGKLLTAMEYPHLRLDGSTPAKDRQGLVDKFNRTSA------NNCFVFLLSAKAGGVGLNLIGASRLVLFDIDWNPATDLQAMGRVHRDGQKHPVHIYRFLTKGALEEKIFQRQLTKQGLADSIVDNKANAS-SFSPEELRDLFTL---DLREGCQTHDLL 792          
The following BLAST results are available for this feature:
BLAST of EWM29527.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112098|gb|EWM29527.1|0.000e+0100.00dna repair rad54-like protein [Nannochloropsis gad... [more]
gi|553191247|ref|XP_005855347.1|0.000e+0100.00DNA repair and recombination protein RAD54 and RAD... [more]
gi|749763656|gb|KII88390.1|3.310e-12241.90hypothetical protein PLICRDRAFT_161431 [Plicaturop... [more]
gi|67624313|ref|XP_668439.1|1.966e-12038.91DNA repair protein RAD54-like [Cryptosporidium hom... [more]
gi|1098426461|gb|OII74562.1|2.225e-12039.33RAD54 like SWI SNF2 ATPase [Cryptosporidium ubiqui... [more]
gi|662527586|gb|KEQ84965.1|3.776e-12039.65hypothetical protein M438DRAFT_255866, partial [Au... [more]
gi|662500320|gb|KEQ57964.1|4.869e-12038.91hypothetical protein M437DRAFT_10207, partial [Aur... [more]
gi|66361996|ref|XP_627962.1|7.123e-12035.21RAD54 like SWI/SNF2 ATpase [Cryptosporidium parvum... [more]
gi|597907640|ref|XP_007301119.1|1.442e-11940.67SNF2 family domain-containing protein [Stereum hir... [more]
gi|1041761806|gb|OBW66656.1|8.962e-11939.47hypothetical protein AUREO_032740 [Aureobasidium p... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1069rna1069Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications