EWM20306.1, cds10368 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20306.1
Unique Name	cds10368
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037279.1:15676..15809 +
Alignment location	KK037279.1:15995..16157 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20306.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101636g2.7688.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037279.1	supercontig	KK037279.1:15676..15809 +
KK037279.1	supercontig	KK037279.1:15995..16157 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM20306.1 vs. NCBI_GenBank
Match: gi|585099788|gb|EWM20306.1| (hypothetical protein Naga_101636g2 [Nannochloropsis gaditana])

HSP 1 Score: 203.371 bits (516), Expect = 2.483e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MLKSTFLHVRQLIRSSKCLLYICLKVCRRFVCSQHIKGKRAKAMNMWRVFKAGNNKKVDARQGRGHDHSETLPKYMFYQFLWRKLAKSLSTTKRKSGQ 98
            MLKSTFLHVRQLIRSSKCLLYICLKVCRRFVCSQHIKGKRAKAMNMWRVFKAGNNKKVDARQGRGHDHSETLPKYMFYQFLWRKLAKSLSTTKRKSGQ
Sbjct:    1 MLKSTFLHVRQLIRSSKCLLYICLKVCRRFVCSQHIKGKRAKAMNMWRVFKAGNNKKVDARQGRGHDHSETLPKYMFYQFLWRKLAKSLSTTKRKSGQ 98

The following BLAST results are available for this feature:

BLAST of EWM20306.1 vs. NCBI_GenBank

BLAST of EWM20306.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585099788\|gb\|EWM20306.1\|	2.483e-66	100.00	hypothetical protein Naga_101636g2 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10401	rna10401	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications