EWM29629.1, cds1031 (CDS) Nannochloropsis gaditana

Overview
NameEWM29629.1
Unique Namecds1031
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:1003749..1003928 +
Alignment locationCM002456.1:1004134..1004580 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM29629.1
Producthistone h1
Orig transcript idgnl|cribi|Naga_100050g28.6852.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:1003749..1003928 +
CM002456.1supercontigCM002456.1:1004134..1004580 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006334nucleosome assembly
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR005818Histone_H1/H5_H15
IPR005819Histone_H5
Homology
[Close]
BLAST of EWM29629.1 vs. NCBI_GenBank
Match: gi|585112201|gb|EWM29629.1| (histone h1 [Nannochloropsis gaditana])

HSP 1 Score: 375.17 bits (962), Expect = 7.179e-131
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 
Query:    1 MSKPSNFDLIREAILALKDRTGSSPAAIRAYLTKNSPSFQDDHHFKAALRSGEKTGKLIKVKASYKLSEAAKKVAKAVKAVKKVTKKASAVARKSAPKEKVASLKRAAAGPAPAKKVVAKKNYAPGKKSSTKKAVPAKKRTAAKKSAPAKRPVAKKTGAKNIAPTKKAASSKKSASSKKTTPATKAVASKKTAPKRAALKKKSTLKKK 208
            MSKPSNFDLIREAILALKDRTGSSPAAIRAYLTKNSPSFQDDHHFKAALRSGEKTGKLIKVKASYKLSEAAKKVAKAVKAVKKVTKKASAVARKSAPKEKVASLKRAAAGPAPAKKVVAKKNYAPGKKSSTKKAVPAKKRTAAKKSAPAKRPVAKKTGAKNIAPTKKAASSKKSASSKKTTPATKAVASKKTAPKRAALKKKSTLKKK
Sbjct:    1 MSKPSNFDLIREAILALKDRTGSSPAAIRAYLTKNSPSFQDDHHFKAALRSGEKTGKLIKVKASYKLSEAAKKVAKAVKAVKKVTKKASAVARKSAPKEKVASLKRAAAGPAPAKKVVAKKNYAPGKKSSTKKAVPAKKRTAAKKSAPAKRPVAKKTGAKNIAPTKKAASSKKSASSKKTTPATKAVASKKTAPKRAALKKKSTLKKK 208
[Close]
BLAST of EWM29629.1 vs. NCBI_GenBank
Match: gi|1214710662|gb|OWZ21731.1| (Histone H1 [Phytophthora megakarya])

HSP 1 Score: 60.077 bits (144), Expect = 2.063e-7
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 0 
Query:    2 SKPSNFDLIREAILALKDRTGSSPAAIRAYLTKNSPSFQDDHHFKAALRSGEKTGKLIKVKASYKLS 68
            S PS FDL+ +AI  LK+R+GSS  AI   +     ++   HH   ALR+G + GKLI++K SYKLS
Sbjct:   73 SGPSYFDLVVDAIKELKERSGSSRQAIGKVVEAKKNNYAS-HHLNKALRTGVEAGKLIQIKGSYKLS 138
The following BLAST results are available for this feature:
BLAST of EWM29629.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585112201|gb|EWM29629.1|7.179e-131100.00histone h1 [Nannochloropsis gaditana][more]
gi|1214710662|gb|OWZ21731.1|2.063e-747.76Histone H1 [Phytophthora megakarya][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna1032rna1032Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications