EWM20440.1, cds10231 (CDS) Nannochloropsis gaditana

Overview
NameEWM20440.1
Unique Namecds10231
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037268.1:19982..20058 +
Alignment locationKK037268.1:20322..20507 +
Alignment locationKK037268.1:20695..20908 +

Link to JBrowse

Properties
Property NameValue
Start range19982
Start range.
Protein idEWM20440.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101072g3.10026.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:19982..20058 +
KK037268.1supercontigKK037268.1:20322..20507 +
KK037268.1supercontigKK037268.1:20695..20908 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20440.1 vs. NCBI_GenBank
Match: gi|585100061|gb|EWM20440.1| (hypothetical protein Naga_101072g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 298.516 bits (763), Expect = 4.114e-102
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 
Query:    1 SSASPSISTTVGTRSSAALTRKPPIRRRKTEETASSLRPRRLSMRNRKREGRRKGWRGRRRTSSGSKRWSPARSSMRSVVYSSPLCNWRTTETYSWCTRRATRTPTGSPSASSFSPTSACTSDSPARSLGTLTCKASNVVALAACTPRVRMTAGQCQG 158
            SSASPSISTTVGTRSSAALTRKPPIRRRKTEETASSLRPRRLSMRNRKREGRRKGWRGRRRTSSGSKRWSPARSSMRSVVYSSPLCNWRTTETYSWCTRRATRTPTGSPSASSFSPTSACTSDSPARSLGTLTCKASNVVALAACTPRVRMTAGQCQG
Sbjct:    1 SSASPSISTTVGTRSSAALTRKPPIRRRKTEETASSLRPRRLSMRNRKREGRRKGWRGRRRTSSGSKRWSPARSSMRSVVYSSPLCNWRTTETYSWCTRRATRTPTGSPSASSFSPTSACTSDSPARSLGTLTCKASNVVALAACTPRVRMTAGQCQG 158
The following BLAST results are available for this feature:
BLAST of EWM20440.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100061|gb|EWM20440.1|4.114e-102100.00hypothetical protein Naga_101072g3, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10262rna10262Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications