EWM20443.1, cds10230 (CDS) Nannochloropsis gaditana

Overview
NameEWM20443.1
Unique Namecds10230
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037268.1:17694..18155 -
Alignment locationKK037268.1:17319..17530 -

Link to JBrowse

Properties
Property NameValue
Start range17319
Start range.
Protein idEWM20443.1
Productdihydrofolate reductase
Partialtrue
Orig transcript idgnl|cribi|Naga_101645g1.2641.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:17694..18155 -
KK037268.1supercontigKK037268.1:17319..17530 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0006545glycine biosynthetic process
GO:0055114oxidation-reduction process
GO:0009165nucleotide biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004146dihydrofolate reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR024072DHFR-like_dom
IPR001796DHFR_dom
Homology
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|585100066|gb|EWM20443.1| (dihydrofolate reductase, partial [Nannochloropsis gaditana])

HSP 1 Score: 446.432 bits (1147), Expect = 2.074e-158
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0
Query:    1 MLLRRCLQHCLDTSAPNGIKRVDIRRYTALDTQFPPSTSFTASSSCSSSLASSSSSSSSFSFFLPSTSPPPSSPCPSFSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYEVTIPVPVESDNKGEGGVGGWDGASGGREEKGGRREEEGGREGGREGGW 224
            MLLRRCLQHCLDTSAPNGIKRVDIRRYTALDTQFPPSTSFTASSSCSSSLASSSSSSSSFSFFLPSTSPPPSSPCPSFSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYEVTIPVPVESDNKGEGGVGGWDGASGGREEKGGRREEEGGREGGREGGW
Sbjct:    1 MLLRRCLQHCLDTSAPNGIKRVDIRRYTALDTQFPPSTSFTASSSCSSSLASSSSSSSSFSFFLPSTSPPPSSPCPSFSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYEVTIPVPVESDNKGEGGVGGWDGASGGREEKGGRREEEGGREGGREGGW 224          
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|652832577|ref|WP_027116555.1| (hypothetical protein [Lachnospiraceae bacterium P6B14])

HSP 1 Score: 60.077 bits (144), Expect = 8.868e-8
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYE 176
            ++MIA VAP  + IGKGG++PW+LPEDR+ F   T G  L++GR++YE
Sbjct:    2 LKMIAAVAPGGV-IGKGGRIPWNLPEDRRMFREITMGGTLIVGRKTYE 48          
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|655070465|ref|WP_028518702.1| (dihydrofolate reductase [Ruminococcus flavefaciens])

HSP 1 Score: 59.6918 bits (143), Expect = 1.067e-7
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 0
Query:  129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYE 176
            + +IA VA  N  IG  G++PWD+PEDR YF + T+G+I ++GR++YE
Sbjct:    2 INIIAAVAA-NRIIGSKGKIPWDIPEDRAYFRNLTKGNICIMGRKTYE 48          
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|916272764|ref|WP_051007810.1| (hypothetical protein [Ruminococcus flavefaciens])

HSP 1 Score: 57.3806 bits (137), Expect = 5.362e-7
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0
Query:  129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSY-EVTIPVP 182
            + +IA VA  N  IG GG++PW +P+D  YF   T GHI+++GRRS+ E+  P+P
Sbjct:    2 INIIAAVAA-NGVIGSGGKIPWHIPQDMNYFRRITSGHIIIMGRRSFEEIGRPLP 55          
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|916849660|ref|WP_051456716.1| (dihydrofolate reductase [Ruminococcus flavefaciens] >gi|585217856|gb|EWM52290.1| hypothetical protein RF007C_13130 [Ruminococcus flavefaciens 007c])

HSP 1 Score: 57.7658 bits (138), Expect = 6.012e-7
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0
Query:  129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSY-EVTIPVP 182
            + +IA VA  N  IG GG++PW +P+D  YF   T GHI+++GRRS+ E+  P+P
Sbjct:    2 INIIAAVAA-NGVIGSGGKIPWHIPQDMNYFRRITSGHIIIMGRRSFEEIGRPLP 55          
The following BLAST results are available for this feature:
BLAST of EWM20443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585100066|gb|EWM20443.1|2.074e-158100.00dihydrofolate reductase, partial [Nannochloropsis ... [more]
gi|652832577|ref|WP_027116555.1|8.868e-854.17hypothetical protein [Lachnospiraceae bacterium P6... [more]
gi|655070465|ref|WP_028518702.1|1.067e-750.00dihydrofolate reductase [Ruminococcus flavefaciens... [more]
gi|916272764|ref|WP_051007810.1|5.362e-747.27hypothetical protein [Ruminococcus flavefaciens][more]
gi|916849660|ref|WP_051456716.1|6.012e-747.27dihydrofolate reductase [Ruminococcus flavefaciens... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10261rna10261Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications