EWM20485.1, cds10188 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|585100146|gb|EWM20485.1| (wd repeat-containing protein 92 [Nannochloropsis gaditana]) HSP 1 Score: 388.652 bits (997), Expect = 7.847e-137 Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query: 1 MSIALIREKGGEQSHVVKINLNPKRLCYGRPKNTEKRKTSFIGPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLPPSLPPSLAWSLPSSILFLSPPQIARLHSLFLAFST 189
MSIALIREKGGEQSHVVKINLNPKRLCYGRPKNTEKRKTSFIGPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLPPSLPPSLAWSLPSSILFLSPPQIARLHSLFLAFST
Sbjct: 1 MSIALIREKGGEQSHVVKINLNPKRLCYGRPKNTEKRKTSFIGPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLPPSLPPSLAWSLPSSILFLSPPQIARLHSLFLAFST 189
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|553191799|ref|XP_005855457.1| (wd repeat-containing protein 92, partial [Nannochloropsis gaditana CCMP526] >gi|422293599|gb|EKU20899.1| wd repeat-containing protein 92, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 199.519 bits (506), Expect = 2.482e-63 Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0
Query: 47 MVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCV 141
MVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATA+GKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCV
Sbjct: 1 MVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATATGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCV 95
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|1198303303|gb|OUM60205.1| (hypothetical protein PIROE2DRAFT_14100, partial [Piromyces sp. E2]) HSP 1 Score: 99.3673 bits (246), Expect = 1.722e-23 Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
PQ IPH Q +L++T DVKW+PCSAR V +G + G G +++Y + G LK T ET + +C TFGA++L R ATGD++G L +W
Sbjct: 2 PQIIPHLQKSLNFTAFDVKWVPCSARFVVLGQYSRGTGVMQVYEIDNGELKVTQETEKTHAFKCGTFGASSLNTRHFATGDFSGRLSLW 90
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|537262402|gb|ERE90242.1| (WD repeat-containing protein 92 [Cricetulus griseus]) HSP 1 Score: 98.2117 bits (243), Expect = 2.979e-23 Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0
Query: 54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
PQ I H Q L+YT D KW+PCSA+ V++G A G G +++Y + G LK E A+ ++C TFGAA+L++R LATGD++G+L +W
Sbjct: 7 PQIIVHIQKGLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRYLATGDFDGNLHIW 95
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|405955292|gb|EKC22462.1| (WD repeat-containing protein 92 [Crassostrea gigas]) HSP 1 Score: 99.3673 bits (246), Expect = 4.182e-23 Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 0
Query: 52 DGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLP 154
D PQ I H + +L YT D KWIPCSA+ V +G+ A G G ++IY LS G + E A++L+C TFGA++L++R LATGD++G + +W + P LP
Sbjct: 2 DKPQIIAHIEKSLDYTLFDTKWIPCSAKFVVLGSHARGTGAIQIYELSHGQINCVKEIEKAKALKCGTFGASSLQQRYLATGDFDGRMQIWNL----ETPELP 100
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|91086191|ref|XP_971352.1| (PREDICTED: WD repeat-containing protein 92 [Tribolium castaneum] >gi|270010235|gb|EFA06683.1| WD repeat-containing protein 92-like Protein [Tribolium castaneum]) HSP 1 Score: 102.064 bits (253), Expect = 1.575e-22 Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0
Query: 54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
PQ I H Q L+YT HDVKWIPCSA+ VS+G ++G G +E Y++SG ++K AE +C TF A++L +R LATGD++G L VW
Sbjct: 7 PQIICHVQQALNYTVHDVKWIPCSAKFVSIGGKSNGAGIIETYSISGDGIEKVAEFGKKDHFKCGTFHASSLRDRHLATGDFSGRLQVW 95
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|966644413|gb|KTF79325.1| (hypothetical protein cypCar_00038163 [Cyprinus carpio]) HSP 1 Score: 97.0561 bits (240), Expect = 1.866e-22 Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
PQ I H Q +L+YT D +WIPCSA+ V +G A G G L+IY + G L+ E A+ ++C TFGA +L++R LATGD++G L VW
Sbjct: 8 PQIIAHIQKSLNYTVFDSRWIPCSAKFVCMGNFARGSGVLQIYEIQRGELQLVREIEKAKPIKCGTFGATSLQQRHLATGDFDGGLNVW 96
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|30575632|gb|AAP32828.1| (HZGJ-like protein [Mus musculus]) HSP 1 Score: 100.523 bits (249), Expect = 2.281e-22 Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0
Query: 43 GPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVP 151
GP TM + PQ I H Q L+YT D KW+PCSA+ V++G A G G +++Y + G LK E A+ ++C TFGAA+L++R LATGD+ G+L +W + A P +P
Sbjct: 26 GPLTMSTFEK-PQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRFLATGDFGGNLHIWNLEA-PEMP 132
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|1004664572|ref|XP_015747077.1| (PREDICTED: WD repeat-containing protein 92 [Python bivittatus]) HSP 1 Score: 101.679 bits (252), Expect = 2.395e-22 Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 0
Query: 54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVP 151
PQ I HTQ +LSYT D KW+PCSARL+ +G+ G G +++Y L GG L E ++ ++C TFGAA+L++R LATGD+ G+L +W + A P +P
Sbjct: 10 PQIIAHTQHSLSYTVFDCKWVPCSARLLCLGSFPRGTGVIQLYELQGGRLNLLREIEKSRPIKCGTFGAASLQQRYLATGDFGGNLNIWNLEA-PEIP 106
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|1020605283|ref|XP_016118562.1| (PREDICTED: WD repeat-containing protein 92-like [Sinocyclocheilus grahami]) HSP 1 Score: 96.6709 bits (239), Expect = 2.719e-22 Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0
Query: 54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
PQ I H Q +LSYT D +W+PCSA+ V +G A G G L+IY + G L+ E A+ ++C TFGA +L++R LATGD++G L VW
Sbjct: 8 PQIIAHIQKSLSYTVFDSRWLPCSAKFVCMGNFARGTGVLQIYEVQRGELQLVREIEKAKPIKCGTFGATSLQQRHLATGDFDGSLDVW 96 The following BLAST results are available for this feature:
BLAST of EWM20485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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