EWM20492.1, cds10181 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|585100156|gb|EWM20492.1| (elongation factor ts, partial [Nannochloropsis gaditana]) HSP 1 Score: 334.339 bits (856), Expect = 5.272e-116 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 Query: 1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRGG 168 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRGG Sbjct: 1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRGG 168
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|585111101|gb|EWM28678.1| (elongation factor ts [Nannochloropsis gaditana]) HSP 1 Score: 123.635 bits (309), Expect = 8.219e-31 Identity = 67/114 (58.77%), Postives = 79/114 (69.30%), Query Frame = 0 Query: 49 PMDLIKKLRGMSGAPIMDCKKALAEEKLD--VEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFV---AGA---AKTALGLTQGAKPGV 154 P+ L+K+LR SGAPI DCKKAL E +D + AF+WLRKKGQAT+ K +RA EGLV +AV+G GV VEVNSETDFVARNADFQ FV AGA +G+ G P V Sbjct: 37 PLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPPTVGMDGGPAPSV 150
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1189750508|ref|WP_085795613.1| (translation elongation factor Ts [Tropicibacter litoreus] >gi|1188041075|emb|SLN40692.1| Elongation factor Ts [Tropicibacter litoreus R37]) HSP 1 Score: 117.087 bits (292), Expect = 6.507e-29 Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 0 Query: 52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGL 146 L+K+LR +GA +MD KKAL E D+EAA DWLR KG A AK+ R EGLVA+ VDG +GVAVEVNSETDFVA+NADFQ FV G AK ALG+ Sbjct: 7 LVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVVVDGGKGVAVEVNSETDFVAKNADFQEFVGGIAKAALGV 102
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|914215189|ref|WP_050531434.1| (elongation factor Ts [Aestuariivita atlantica] >gi|910302295|gb|KNG92947.1| elongation factor Ts [Aestuariivita atlantica]) HSP 1 Score: 116.316 bits (290), Expect = 1.399e-28 Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0 Query: 53 IKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLT 147 +K+LR M+GA +MD KKAL E D+EAA DWLR KG A AK+ R EGLVA+ VDG RGVAVEVN+ETDFVA+NADFQ V+G A ALG++ Sbjct: 8 VKELREMTGAGMMDAKKALTENDGDIEAAIDWLRTKGLAKAAKKSGRVAAEGLVAVKVDGGRGVAVEVNAETDFVAKNADFQSMVSGIADAALGVS 103
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|503841876|ref|WP_014075870.1| (elongation factor Ts [Sphingobium sp. SYK-6] >gi|345136610|dbj|BAK66219.1| elongation factor Ts [Sphingobium sp. SYK-6]) HSP 1 Score: 116.316 bits (290), Expect = 1.691e-28 Identity = 62/93 (66.67%), Postives = 70/93 (75.27%), Query Frame = 0 Query: 53 IKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTAL 144 +K+LR SGA +MDCKKALAE DVEAA DWLR KG A K+ R EGLVA+AVDGT+GVAVEVNSETDFVA+N FQ FV AA+ AL Sbjct: 9 VKELRERSGAGMMDCKKALAETDGDVEAAVDWLRAKGLAAAQKKSSRTAAEGLVAVAVDGTKGVAVEVNSETDFVAKNEQFQNFVRAAAEVAL 101
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1097297709|emb|SFS10485.1| (translation elongation factor Ts (EF-Ts) [Loktanella litorea]) HSP 1 Score: 115.931 bits (289), Expect = 1.788e-28 Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0 Query: 52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145 ++K+LR +GA +MD KKAL E D+EAA DWLR KG A AK+ R EGLVA+AV+G +G+AVEVNSETDFVA+NADFQ VAG A+TALG Sbjct: 7 MVKELRDSTGAGMMDAKKALTENDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGKGIAVEVNSETDFVAKNADFQKMVAGIAQTALG 101
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1189788453|ref|WP_085825224.1| (translation elongation factor Ts [Roseovarius gaetbuli] >gi|1188024271|emb|SLN11156.1| Elongation factor Ts [Roseovarius gaetbuli]) HSP 1 Score: 115.161 bits (287), Expect = 3.173e-28 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0 Query: 52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145 ++K+LR +GA +MD KKAL E D+EAA DWLR KG A AK+ R EGLVA+ V+G RGVAVEVNSETDFVA+NA+FQG VAG AK ALG Sbjct: 7 MVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVQVEGGRGVAVEVNSETDFVAKNAEFQGMVAGIAKAALG 101
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1120329338|ref|WP_073194194.1| (translation elongation factor Ts [Roseovarius marisflavi] >gi|1110107667|emb|SHK80501.1| translation elongation factor Ts (EF-Ts) [Roseovarius marisflavi]) HSP 1 Score: 115.161 bits (287), Expect = 3.310e-28 Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0 Query: 52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145 ++K+LR +GA +MD KKAL E D+EAA DWLR KG A AK+ R EGLVA+ V+G RGVAVEVNSETDFVA+NA+FQG VAG AK ALG Sbjct: 7 MVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVQVEGGRGVAVEVNSETDFVAKNAEFQGMVAGIAKAALG 101
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|737263850|ref|WP_035247790.1| (elongation factor Ts [Actibacterium atlanticum] >gi|628971195|gb|KCV83689.1| elongation factor Ts [Actibacterium atlanticum]) HSP 1 Score: 115.161 bits (287), Expect = 3.920e-28 Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 0 Query: 52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGL 146 L+K+LR +GA +MD KKAL E D+EAA DWLR KG A AK+ R EGLVA+AV+G +GVAVEVNSETDFVA+NA+FQG V G AK ALG+ Sbjct: 7 LVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGKGVAVEVNSETDFVAKNAEFQGMVGGIAKAALGV 102
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1200523081|gb|OUW36185.1| (translation elongation factor Ts [Alphaproteobacteria bacterium TMED176]) HSP 1 Score: 115.161 bits (287), Expect = 4.411e-28 Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 0 Query: 52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145 L+K+LR SGA +MDCKKALAE D+EAA DWLR KG AT AK+ R EGLVA VDGT+G +E+N+ETDFVARN +FQ F + AK ALG Sbjct: 7 LVKELREKSGAGMMDCKKALAETDGDMEAAVDWLRTKGLATAAKKSGRVASEGLVAFCVDGTKGAVIELNAETDFVARNTEFQEFASTLAKLALG 101 The following BLAST results are available for this feature:
BLAST of EWM20492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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