EWM20529.1, cds10145 (CDS) Nannochloropsis gaditana

Overview
NameEWM20529.1
Unique Namecds10145
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:54393..54875 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20529.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101670g1.459.mrna
GbkeyCDS
End range.
End range54875
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:54393..54875 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20529.1 vs. NCBI_GenBank
Match: gi|585100211|gb|EWM20529.1| (hypothetical protein Naga_101670g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 305.064 bits (780), Expect = 1.306e-104
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 
Query:    1 KEEGNEEGEEEAKEPGRKEGGNQGEAKDGMERATTGEQDPPEEKRASASNIPMLASEAQAPAGVVTPTDEAGIEGKTASISPGALLSIVPLAPAFPSTLPPSPHPTLTILSTGSDKGQPTVRVEEKEGAEAAGGSIGEGGMKVGSEKEEDGRGAVGMDVA 160
            KEEGNEEGEEEAKEPGRKEGGNQGEAKDGMERATTGEQDPPEEKRASASNIPMLASEAQAPAGVVTPTDEAGIEGKTASISPGALLSIVPLAPAFPSTLPPSPHPTLTILSTGSDKGQPTVRVEEKEGAEAAGGSIGEGGMKVGSEKEEDGRGAVGMDVA
Sbjct:    1 KEEGNEEGEEEAKEPGRKEGGNQGEAKDGMERATTGEQDPPEEKRASASNIPMLASEAQAPAGVVTPTDEAGIEGKTASISPGALLSIVPLAPAFPSTLPPSPHPTLTILSTGSDKGQPTVRVEEKEGAEAAGGSIGEGGMKVGSEKEEDGRGAVGMDVA 160
[Close]
BLAST of EWM20529.1 vs. NCBI_GenBank
Match: gi|553192805|ref|XP_005855651.1| (hypothetical protein NGA_0646600, partial [Nannochloropsis gaditana CCMP526] >gi|422293417|gb|EKU20717.1| hypothetical protein NGA_0646600, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 95.1301 bits (235), Expect = 3.533e-23
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0 
Query:   30 MERATTGEQDPPEEKRASASNIPMLASEAQAPAGVVTPTDEAGIEGKT 77
            MERATTGEQDPPEEKRASASNIPMLASEAQAPAGVVTPTDEAGIEGKT
Sbjct:    1 MERATTGEQDPPEEKRASASNIPMLASEAQAPAGVVTPTDEAGIEGKT 48
The following BLAST results are available for this feature:
BLAST of EWM20529.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100211|gb|EWM20529.1|1.306e-104100.00hypothetical protein Naga_101670g1, partial [Nanno... [more]
gi|553192805|ref|XP_005855651.1|3.533e-23100.00hypothetical protein NGA_0646600, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10176rna10176Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications