EWM20552.1, cds10121 (CDS) Nannochloropsis gaditana

Overview
NameEWM20552.1
Unique Namecds10121
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037264.1:4436..4595 +
Alignment locationKK037264.1:4880..5175 +

Link to JBrowse

Properties
Property NameValue
End range.
End range5175
Protein idEWM20552.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101174g1.4949.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:4436..4595 +
KK037264.1supercontigKK037264.1:4880..5175 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20552.1 vs. NCBI_GenBank
Match: gi|585100252|gb|EWM20552.1| (hypothetical protein Naga_101174g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 301.212 bits (770), Expect = 2.446e-103
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 
Query:    1 MRNAYHRRGVLIFLLAIYASIDTMLRHGLGKVQGARPLQAGRVRTLFLGASSTGHVQRPHPHPYTHRTSSKSIAWTRAAAALGGMSLLTSVTGTAGGGSGGPTAPTKGMTSMAAGEGGVGGGNALLEQDGLPKFGKITPEAVVPAIRRLSEV 152
            MRNAYHRRGVLIFLLAIYASIDTMLRHGLGKVQGARPLQAGRVRTLFLGASSTGHVQRPHPHPYTHRTSSKSIAWTRAAAALGGMSLLTSVTGTAGGGSGGPTAPTKGMTSMAAGEGGVGGGNALLEQDGLPKFGKITPEAVVPAIRRLSEV
Sbjct:    1 MRNAYHRRGVLIFLLAIYASIDTMLRHGLGKVQGARPLQAGRVRTLFLGASSTGHVQRPHPHPYTHRTSSKSIAWTRAAAALGGMSLLTSVTGTAGGGSGGPTAPTKGMTSMAAGEGGVGGGNALLEQDGLPKFGKITPEAVVPAIRRLSEV 152
The following BLAST results are available for this feature:
BLAST of EWM20552.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100252|gb|EWM20552.1|2.446e-103100.00hypothetical protein Naga_101174g1, partial [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10152rna10152Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications