EWM20570.1, cds10103 (CDS) Nannochloropsis gaditana

Overview
NameEWM20570.1
Unique Namecds10103
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037263.1:29660..29750 +
Alignment locationKK037263.1:29830..30042 +
Alignment locationKK037263.1:30147..30246 +
Alignment locationKK037263.1:30314..30426 +
Alignment locationKK037263.1:30500..30541 +
Alignment locationKK037263.1:30664..30740 +
Alignment locationKK037263.1:30833..30855 +
Alignment locationKK037263.1:30920..31014 +
Alignment locationKK037263.1:31122..31268 +
Alignment locationKK037263.1:31393..31502 +
Alignment locationKK037263.1:31612..31675 +
Alignment locationKK037263.1:31783..31898 +

Link to JBrowse

Properties
Property NameValue
Start range29660
Start range.
Protein idEWM20570.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101450g1.5810.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037263.1supercontigKK037263.1:29660..29750 +
KK037263.1supercontigKK037263.1:29830..30042 +
KK037263.1supercontigKK037263.1:30147..30246 +
KK037263.1supercontigKK037263.1:30314..30426 +
KK037263.1supercontigKK037263.1:30500..30541 +
KK037263.1supercontigKK037263.1:30664..30740 +
KK037263.1supercontigKK037263.1:30833..30855 +
KK037263.1supercontigKK037263.1:30920..31014 +
KK037263.1supercontigKK037263.1:31122..31268 +
KK037263.1supercontigKK037263.1:31393..31502 +
KK037263.1supercontigKK037263.1:31612..31675 +
KK037263.1supercontigKK037263.1:31783..31898 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20570.1 vs. NCBI_GenBank
Match: gi|553193511|ref|XP_005855790.1| (hypothetical protein NGA_0630800, partial [Nannochloropsis gaditana CCMP526] >gi|422293266|gb|EKU20566.1| hypothetical protein NGA_0630800, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 820.461 bits (2118), Expect = 0.000e+0
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query:    1 FLLLAAATVGTAKFNNITGGLPNARRPKYPGTKKCDPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPPLTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVAKLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINNQLYAKATWASVGLNCSMSSDPAEVQAFSVENAFVPYMAGFN 396
            FLLLAAATVGTAKFNNITGGLPNARRPKYPGTKKCDPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPPLTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVAKLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINNQLYAKATWASVGLNCSMSSDPAEVQAFSVENAFVPYMAGFN
Sbjct:    2 FLLLAAATVGTAKFNNITGGLPNARRPKYPGTKKCDPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPPLTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVAKLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINNQLYAKATWASVGLNCSMSSDPAEVQAFSVENAFVPYMAGFN 397          
BLAST of EWM20570.1 vs. NCBI_GenBank
Match: gi|585100290|gb|EWM20570.1| (hypothetical protein Naga_101450g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 820.076 bits (2117), Expect = 0.000e+0
Identity = 396/396 (100.00%), Postives = 396/396 (100.00%), Query Frame = 0
Query:    1 FLLLAAATVGTAKFNNITGGLPNARRPKYPGTKKCDPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPPLTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVAKLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINNQLYAKATWASVGLNCSMSSDPAEVQAFSVENAFVPYMAGFN 396
            FLLLAAATVGTAKFNNITGGLPNARRPKYPGTKKCDPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPPLTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVAKLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINNQLYAKATWASVGLNCSMSSDPAEVQAFSVENAFVPYMAGFN
Sbjct:    1 FLLLAAATVGTAKFNNITGGLPNARRPKYPGTKKCDPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPPLTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVAKLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINNQLYAKATWASVGLNCSMSSDPAEVQAFSVENAFVPYMAGFN 396          
BLAST of EWM20570.1 vs. NCBI_GenBank
Match: gi|971511287|dbj|GAQ86914.1| (hypothetical protein KFL_003200060 [Klebsormidium nitens])

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-11
Identity = 91/355 (25.63%), Postives = 138/355 (38.87%), Query Frame = 0
Query:   11 TAKFNNITGGLPNARRPKYPGTKKC-----DPTRCICTPEAFIEAFLNTPNLSGNLTTNPNLNSTVIPFPVCVGEELVGRVNGNGIPP----LTPTLSPLDRQKHMTFVFDNIGLEKILALGQYRAKQILSLIGYGAIDTFSCNPDPAKQQLVVLQIKEPNVGGACRRKNPNDPYSKIPNKCNRKLRMSAIWDNALVWLERVFRKDLSRFEPAMNILKTTRFETLTGCRPDDVA-KLYFPFDRTFANLTAAGCSDVFANAVVEFATTPCYKPSIAQMNEYASKYLYYSEGRKGRKTNYCEADILLQQLDPTSPDIAQQLRAYFFITQSFNGYYAGYGWTANDYALPQIPEWWINN 355
            TA+    +  L  A +P    T  C     DP +CI TP  +++  +          ++  LN T      CV + ++GR+           L P LS    ++ + F      LEKIL  G   A + +  +GYG  D F C   P  +     Q +       C  KN                 +   W N   ++   + K+L +    +  L+ T F  LT C PD +  K + P     A    AGCS  +  A+ +F    C        N+ + +   Y++         C A+  L  L   SP    +LRA+   TQ F   Y GY +TAN+Y  P   E+WI+N
Sbjct:   62 TAQLKAASMQLSAANKPGSKHTDACMARAHDP-QCIKTPAEYVKILMERSK------SHVALNRTA-----CVADNMLGRMYTGAFQSDDWQLDPVLSNAPARR-IIFAIGPRMLEKILVWGHNAADKAVKSLGYG--DAFVCGGAPDYR--ASCQYRLLVWTSECTVKNEGP-------------LVRGDWANLEAFMREDYGKELPKLTRQIAELEATTFRELTKCDPDVLQIKAWDP-----AQQVKAGCSPEYIAALAKFPYKAC--------NDSSPQVTKYTK---------CPAEEAL--LHGGSPPTTLELRAFLQQTQGFMPQYTGYSYTANEYDDPLSQEFWIHN 362          
The following BLAST results are available for this feature:
BLAST of EWM20570.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|553193511|ref|XP_005855790.1|0.000e+0100.00hypothetical protein NGA_0630800, partial [Nannoch... [more]
gi|585100290|gb|EWM20570.1|0.000e+0100.00hypothetical protein Naga_101450g1, partial [Nanno... [more]
gi|971511287|dbj|GAQ86914.1|2.067e-1125.63hypothetical protein KFL_003200060 [Klebsormidium ... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10134rna10134Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications