EWM20623.1, cds10050 (CDS) Nannochloropsis gaditana

Overview
NameEWM20623.1
Unique Namecds10050
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:95193..95567 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20623.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101524g1.8897.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:95193..95567 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20623.1 vs. NCBI_GenBank
Match: gi|585100398|gb|EWM20623.1| (hypothetical protein Naga_101524g1 [Nannochloropsis gaditana])

HSP 1 Score: 252.292 bits (643), Expect = 6.818e-85
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0
Query:    1 MGEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLVKTLCGGVKLCQLIWRDLKILILEGQNMKFN 124
            MGEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLVKTLCGGVKLCQLIWRDLKILILEGQNMKFN
Sbjct:    1 MGEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLVKTLCGGVKLCQLIWRDLKILILEGQNMKFN 124          
BLAST of EWM20623.1 vs. NCBI_GenBank
Match: gi|553180048|ref|XP_005853322.1| (hypothetical protein NGA_0718300 [Nannochloropsis gaditana CCMP526] >gi|422295724|gb|EKU23023.1| hypothetical protein NGA_0718300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 247.669 bits (631), Expect = 3.748e-83
Identity = 121/124 (97.58%), Postives = 123/124 (99.19%), Query Frame = 0
Query:    1 MGEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLVKTLCGGVKLCQLIWRDLKILILEGQNMKFN 124
            MG DDLLLGRDDC+PTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLV+TLCGGVKLCQLIWRDLKILILEGQNMKFN
Sbjct:    1 MGVDDLLLGRDDCLPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLVRTLCGGVKLCQLIWRDLKILILEGQNMKFN 124          
BLAST of EWM20623.1 vs. NCBI_GenBank
Match: gi|585108501|gb|EWM26454.1| (hypothetical protein Naga_100144g13 [Nannochloropsis gaditana])

HSP 1 Score: 186.037 bits (471), Expect = 3.817e-55
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 0
Query:    1 MGEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGF 91
            MGEDDLLLGRDDCIPTVLTVSNGC LNMFPI VCVPEWEVESVILGCPKEK NDLVFMQSACLETLLKRYG ANKKTTQCLP FSISPFG 
Sbjct:  123 MGEDDLLLGRDDCIPTVLTVSNGCTLNMFPIYVCVPEWEVESVILGCPKEKRNDLVFMQSACLETLLKRYGLANKKTTQCLPYFSISPFGL 213          
BLAST of EWM20623.1 vs. NCBI_GenBank
Match: gi|299117349|emb|CBN75305.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.2554 bits (186), Expect = 5.872e-14
Identity = 47/104 (45.19%), Postives = 57/104 (54.81%), Query Frame = 0
Query:    1 MGEDDLLLGRDDCIPTVLTVSNG-------CALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSISPFGFGLVKTL 97
            MGED ++LGR + IP  L  S+G         L  FPI VCVPE EV +VI  CP +K +DLVFM S CLE LLK  G    + TQ    FS+   G   V  +
Sbjct:   47 MGED-VVLGRGEAIPDSLPCSSGKGEDGEPAMLQNFPIYVCVPEEEVAAVIDSCPDDKKDDLVFMSSGCLEPLLKSRGMCRGEQTQATLYFSVDKVGGRAVDAM 149          
BLAST of EWM20623.1 vs. NCBI_GenBank
Match: gi|551669787|ref|XP_005837652.1| (hypothetical protein GUITHDRAFT_151218 [Guillardia theta CCMP2712] >gi|428181809|gb|EKX50672.1| hypothetical protein GUITHDRAFT_151218 [Guillardia theta CCMP2712])

HSP 1 Score: 69.707 bits (169), Expect = 1.485e-11
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 0
Query:    2 GEDDLLLGRDDCIPTVLTVSNGCALNMFPIDVCVPEWEVESVILGCPKEKPNDLVFMQSACLETLLKRYGWANKKTTQCLPDFSI 86
            G DD+++GR   IP V        L  FP+ VCVP  E+E+VI  CP+ K +DLVF+Q   +E +LK+Y     + TQ LP F++
Sbjct:   91 GGDDVVVGRGGQIPEVHE-----GLESFPVYVCVPTSELENVIRSCPQSKLDDLVFVQDGMIEPILKKYALCGNENTQMLPYFTL 170          
BLAST of EWM20623.1 vs. NCBI_GenBank
Match: gi|553180283|ref|XP_005853379.1| (hypothetical protein NGA_0116102 [Nannochloropsis gaditana CCMP526] >gi|553191635|ref|XP_005855420.1| hypothetical protein NGA_0116101 [Nannochloropsis gaditana CCMP526] >gi|422293651|gb|EKU20951.1| hypothetical protein NGA_0116101 [Nannochloropsis gaditana CCMP526] >gi|422295684|gb|EKU22983.1| hypothetical protein NGA_0116102 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 66.2402 bits (160), Expect = 9.547e-11
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 0
Query:   58 MQSACLETLLKRYGWANKKTTQCLPDFSISPFGF 91
            MQSACLETLLKRYG ANKKTTQCLP FSISPFG 
Sbjct:    1 MQSACLETLLKRYGLANKKTTQCLPYFSISPFGL 34          
The following BLAST results are available for this feature:
BLAST of EWM20623.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585100398|gb|EWM20623.1|6.818e-85100.00hypothetical protein Naga_101524g1 [Nannochloropsi... [more]
gi|553180048|ref|XP_005853322.1|3.748e-8397.58hypothetical protein NGA_0718300 [Nannochloropsis ... [more]
gi|585108501|gb|EWM26454.1|3.817e-5593.41hypothetical protein Naga_100144g13 [Nannochlorops... [more]
gi|299117349|emb|CBN75305.1|5.872e-1445.19conserved unknown protein [Ectocarpus siliculosus][more]
gi|551669787|ref|XP_005837652.1|1.485e-1142.35hypothetical protein GUITHDRAFT_151218 [Guillardia... [more]
gi|553180283|ref|XP_005853379.1|9.547e-1191.18hypothetical protein NGA_0116102 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10081rna10081Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications