EWM20639.1, cds10034 (CDS) Nannochloropsis gaditana

Overview
NameEWM20639.1
Unique Namecds10034
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:51115..51294 +
Alignment locationKK037261.1:51578..51658 +
Alignment locationKK037261.1:51839..51955 +
Alignment locationKK037261.1:52119..52238 +
Alignment locationKK037261.1:52435..52554 +
Alignment locationKK037261.1:52675..52806 +
Alignment locationKK037261.1:53063..53128 +
Alignment locationKK037261.1:53264..53329 +
Alignment locationKK037261.1:53538..53684 +
Alignment locationKK037261.1:53926..54099 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20639.1
ProductInitiation factor eIF-4 gamma, MA3
Orig transcript idgnl|cribi|Naga_100757g2.6624.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:51115..51294 +
KK037261.1supercontigKK037261.1:51578..51658 +
KK037261.1supercontigKK037261.1:51839..51955 +
KK037261.1supercontigKK037261.1:52119..52238 +
KK037261.1supercontigKK037261.1:52435..52554 +
KK037261.1supercontigKK037261.1:52675..52806 +
KK037261.1supercontigKK037261.1:53063..53128 +
KK037261.1supercontigKK037261.1:53264..53329 +
KK037261.1supercontigKK037261.1:53538..53684 +
KK037261.1supercontigKK037261.1:53926..54099 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR003891Initiation_fac_eIF4g_MI
Homology
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|585100435|gb|EWM20639.1| (Initiation factor eIF-4 gamma, MA3 [Nannochloropsis gaditana])

HSP 1 Score: 819.305 bits (2115), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0
Query:    1 MRELGKKKGWSQAKEGARVETRRRRPARSRPVHRTRLSPLVQEDKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSSSSSDSSSTSSSSSSSTSSSSSSESESD 400
            MRELGKKKGWSQAKEGARVETRRRRPARSRPVHRTRLSPLVQEDKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSSSSSDSSSTSSSSSSSTSSSSSSESESD
Sbjct:    1 MRELGKKKGWSQAKEGARVETRRRRPARSRPVHRTRLSPLVQEDKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSSSSSDSSSTSSSSSSSTSSSSSSESESD 400          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|635370948|emb|CCI40851.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 383.259 bits (983), Expect = 4.590e-124
Identity = 183/296 (61.82%), Postives = 220/296 (74.32%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLV 339
            D+IT E+ L+D+I+ E+ LDVFRFDPDYE NE  W EIK EILGES SE D  S  DE + + E               +Q   + D TEQDLVNL+RTIYLTIMSS G EE  HKL+K+ +++GQE E+C ML+ECCSQE+TYL+YYG +  R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK FAHLL++D+LPWT+ E I LNEE+TTSSSRIFIK+LCQEL+E +G+  LKER +D YM++ FAGLFP   PR TRFAINFF SIGLGGLT  LR  LKN  K ++
Sbjct:  357 DQITHEIGLEDEIDPEDRLDVFRFDPDYEKNEAMWTEIKNEILGESDSENDQASSGDESDHAGE-------ANEQEQQNSQQNAIQDCTEQDLVNLRRTIYLTIMSSVGHEECAHKLLKIQIRSGQEKEICSMLIECCSQERTYLRYYGLLGQRFCLIKREYQDAFDECFMEQYSLIHRLETNKLRNVAKFFAHLLFTDALPWTILEYIRLNEEETTSSSRIFIKMLCQELAEHMGMKTLKERLTDEYMQETFAGLFPKDHPRNTRFAINFFTSIGLGGLTTELREFLKNAPKLIM 645          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|1173944196|gb|OQR92959.1| (nucampholin [Thraustotheca clavata])

HSP 1 Score: 378.252 bits (970), Expect = 6.953e-124
Identity = 185/296 (62.50%), Postives = 227/296 (76.69%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLV 339
            D+IT ++ LDD+I+ E+ LD+FRFDP++E NER WKEIKKE+LGE  SEA+D      + +S+E+E         +        ++D +EQDLVNL+RTIYLTIMSS   EE  HKL++L+++ GQE E+C ML+ECCSQE+TYL+YYG +  R CL+ R YQ AFE+ F  QYSTIHRLETNKLRNVAK FAHLL+SD+LPWTVFE I L+EE+TTSSSRIFIKILCQELS+ LGLAKL+ERF+D YM  AFAGLFP  +PR  RFAINFF SIGLGGLT  LR +LKN  K L+
Sbjct:  218 DQITHQIGLDDEIDVEDKLDIFRFDPEFERNERMWKEIKKELLGED-SEAEDGDDESGDSDSNEDEPEDAAATTTLQ-------IHDYSEQDLVNLRRTIYLTIMSSLSHEECAHKLLRLNIRPGQESEICSMLIECCSQERTYLRYYGLLGQRFCLVRREYQVAFEDAFAAQYSTIHRLETNKLRNVAKFFAHLLFSDALPWTVFEYIRLSEEETTSSSRIFIKILCQELSQHLGLAKLQERFNDDYMALAFAGLFPKENPRNIRFAINFFTSIGLGGLTKDLREYLKNAPKALM 505          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|301097326|ref|XP_002897758.1| (nucampholin [Phytophthora infestans T30-4] >gi|262106779|gb|EEY64831.1| nucampholin [Phytophthora infestans T30-4])

HSP 1 Score: 379.793 bits (974), Expect = 6.390e-123
Identity = 199/303 (65.68%), Postives = 242/303 (79.87%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAA 346
            D+IT E++L+D I+ E+ LDVFRFDPDYE NE+ W EIKKEILGES S+AD  SGSD++ + +EEE  +  G + +P  N +  + D TEQDLVNL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE+TYL+YYG ++ R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK+FAHLL++D+LPWTVFE + LNEE+TTSSSRIFIKILCQELSE LG+  LKERF D  M+  FAGLFP  +PR TRFAINFF SIGLGGLT  LR +LKN  K ++E+A+AAA
Sbjct:  332 DQITHELTLEDSIDCEDKLDVFRFDPDYEKNEKLWAEIKKEILGESDSDADSSSGSDDDGDDEEEEEEEGDGQL-VPADNNM-AIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLLECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYVRLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQAKAAA 632          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|675180653|ref|XP_008899211.1| (hypothetical protein PPTG_06917 [Phytophthora parasitica INRA-310] >gi|675180655|ref|XP_008899212.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|675180657|ref|XP_008899213.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568101004|gb|ETN15694.1| hypothetical protein PPTG_06917 [Phytophthora parasitica INRA-310] >gi|568101005|gb|ETN15695.1| hypothetical protein, variant 1 [Phytophthora parasitica INRA-310] >gi|568101006|gb|ETN15696.1| hypothetical protein, variant 2 [Phytophthora parasitica INRA-310] >gi|970656837|gb|KUF94800.1| Nucampholin [Phytophthora nicotianae])

HSP 1 Score: 378.252 bits (970), Expect = 8.391e-122
Identity = 214/330 (64.85%), Postives = 255/330 (77.27%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSS 373
            D+IT E++L+D I+ E+ LDVFRFDPDYE NE+ W EIKKEILGES S++D  SGSD ++  DE+E  Q      +P  N +  + D TEQDLVNL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE+TYL+YYG ++ R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK+FAHLL++D+LPWTVFE IHLNEE+TTSSSRIFIKILCQELSE LG+  LKERF D  M+  FAGLFP  +PR TRFAINFF SIGLGGLT  LR +LKN  K ++E+A+AAA     +SSDS  S S S SS SSSSS 
Sbjct:  375 DQITHELTLEDPIDCEDKLDVFRFDPDYEKNEKMWAEIKKEILGESDSDSDSSSGSDNDDGDDEDEDEQP-----VPADNNM-AIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQAKAAA-----DSSDSSDSDSDSDSSDSSSSSG 693          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|676387143|ref|XP_009036850.1| (hypothetical protein AURANDRAFT_987, partial [Aureococcus anophagefferens] >gi|323452289|gb|EGB08163.1| hypothetical protein AURANDRAFT_987, partial [Aureococcus anophagefferens])

HSP 1 Score: 372.089 bits (954), Expect = 1.036e-121
Identity = 184/295 (62.37%), Postives = 227/295 (76.95%), Query Frame = 0
Query:   42 QEDKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQK 336
            +ED+ITFE+SLDD I+KE++LDVFR D D+EA+E  W +IK+EILG+  S +DD+   D+++ +   E      AVG P       + D+TE DLVNL+RTIYLTIMSS GFEE  HKLMKLD++ G EMELC ML+ECCSQE+TYL+YYG +  R C+  RV+QDAF++ F+EQY+ IHRLETNKLRNVAK FAHLL++DSLPWT  E + LNEE+TTSSSRIFIKIL Q+L+E LGL  L++RF D YM   FAGLFP  +PR TRF+INFF SIGLGGLTD LR HLK+  K
Sbjct:  248 REDQITFELSLDDKIDKEDLLDVFRVDDDFEAHEAAWADIKREILGDDESGSDDDDEEDDDDGA---EPTAATPAVGGP-------IQDLTETDLVNLRRTIYLTIMSSVGFEECAHKLMKLDIRPGLEMELCNMLIECCSQERTYLRYYGLLGQRFCVTTRVWQDAFDKAFEEQYAMIHRLETNKLRNVAKFFAHLLHTDSLPWTCLEYVRLNEEETTSSSRIFIKILMQDLAENLGLPTLRDRFDDQYMRDVFAGLFPRENPRDTRFSINFFTSIGLGGLTDALRKHLKDAPK 532          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|568027839|gb|ETM01784.1| (hypothetical protein L917_01665, partial [Phytophthora parasitica] >gi|568027840|gb|ETM01785.1| hypothetical protein, variant 1, partial [Phytophthora parasitica] >gi|568027841|gb|ETM01786.1| hypothetical protein, variant 2, partial [Phytophthora parasitica])

HSP 1 Score: 377.867 bits (969), Expect = 1.296e-121
Identity = 214/330 (64.85%), Postives = 255/330 (77.27%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSS 373
            D+IT E++L+D I+ E+ LDVFRFDPDYE NE+ W EIKKEILGES S++D  SGSD ++  DE+E  Q      +P  N +  + D TEQDLVNL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE+TYL+YYG ++ R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK+FAHLL++D+LPWTVFE IHLNEE+TTSSSRIFIKILCQELSE LG+  LKERF D  M+  FAGLFP  +PR TRFAINFF SIGLGGLT  LR +LKN  K ++E+A+AAA     +SSDS  S S S SS SSSSS 
Sbjct:  378 DQITHELTLEDPIDCEDKLDVFRFDPDYEKNEKMWAEIKKEILGESDSDSDSSSGSDNDDGDDEDEDEQP-----VPADNNM-AIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQAKAAA-----DSSDSSDSDSDSDSSDSSSSSG 696          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|567998656|gb|ETL48721.1| (hypothetical protein L916_01704, partial [Phytophthora parasitica] >gi|570336316|gb|ETO84264.1| hypothetical protein F444_01816, partial [Phytophthora parasitica P1976] >gi|570336317|gb|ETO84265.1| hypothetical protein, variant 1, partial [Phytophthora parasitica P1976] >gi|570336318|gb|ETO84266.1| hypothetical protein, variant 2, partial [Phytophthora parasitica P1976] >gi|570996811|gb|ETP53346.1| hypothetical protein F442_01752, partial [Phytophthora parasitica P10297] >gi|570996812|gb|ETP53347.1| hypothetical protein, variant 1, partial [Phytophthora parasitica P10297] >gi|570996813|gb|ETP53348.1| hypothetical protein, variant 2, partial [Phytophthora parasitica P10297])

HSP 1 Score: 377.867 bits (969), Expect = 1.428e-121
Identity = 214/330 (64.85%), Postives = 255/330 (77.27%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSS 373
            D+IT E++L+D I+ E+ LDVFRFDPDYE NE+ W EIKKEILGES S++D  SGSD ++  DE+E  Q      +P  N +  + D TEQDLVNL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE+TYL+YYG ++ R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK+FAHLL++D+LPWTVFE IHLNEE+TTSSSRIFIKILCQELSE LG+  LKERF D  M+  FAGLFP  +PR TRFAINFF SIGLGGLT  LR +LKN  K ++E+A+AAA     +SSDS  S S S SS SSSSS 
Sbjct:  378 DQITHELTLEDPIDCEDKLDVFRFDPDYEKNEKMWAEIKKEILGESDSDSDSSSGSDNDDGDDEDEDEQP-----VPADNNM-AIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQAKAAA-----DSSDSSDSDSDSDSSDSSSSSG 696          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|566032624|gb|ETI55535.1| (hypothetical protein F443_01814, partial [Phytophthora parasitica P1569] >gi|566032625|gb|ETI55536.1| hypothetical protein, variant 1, partial [Phytophthora parasitica P1569] >gi|566032626|gb|ETI55537.1| hypothetical protein, variant 2, partial [Phytophthora parasitica P1569] >gi|567970288|gb|ETK95331.1| hypothetical protein L915_01732, partial [Phytophthora parasitica] >gi|568058389|gb|ETM55019.1| hypothetical protein L914_01720, partial [Phytophthora parasitica] >gi|568058390|gb|ETM55020.1| hypothetical protein, variant 1, partial [Phytophthora parasitica] >gi|568058391|gb|ETM55021.1| hypothetical protein, variant 2, partial [Phytophthora parasitica])

HSP 1 Score: 377.867 bits (969), Expect = 1.428e-121
Identity = 214/330 (64.85%), Postives = 255/330 (77.27%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAALRQAEESSDSDSSSSSSSSSSSSSSSS 373
            D+IT E++L+D I+ E+ LDVFRFDPDYE NE+ W EIKKEILGES S++D  SGSD ++  DE+E  Q      +P  N +  + D TEQDLVNL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE+TYL+YYG ++ R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK+FAHLL++D+LPWTVFE IHLNEE+TTSSSRIFIKILCQELSE LG+  LKERF D  M+  FAGLFP  +PR TRFAINFF SIGLGGLT  LR +LKN  K ++E+A+AAA     +SSDS  S S S SS SSSSS 
Sbjct:  378 DQITHELTLEDPIDCEDKLDVFRFDPDYEKNEKMWAEIKKEILGESDSDSDSSSGSDNDDGDDEDEDEQP-----VPADNNM-AIQDFTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIHLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFAGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREYLKNAPKMIMEQAKAAA-----DSSDSSDSDSDSDSSDSSSSSG 696          
BLAST of EWM20639.1 vs. NCBI_GenBank
Match: gi|695417731|ref|XP_009527197.1| (hypothetical protein PHYSODRAFT_315122 [Phytophthora sojae] >gi|695468092|ref|XP_009539786.1| hypothetical protein PHYSODRAFT_320313 [Phytophthora sojae] >gi|348664973|gb|EGZ04810.1| hypothetical protein PHYSODRAFT_320313 [Phytophthora sojae] >gi|348678322|gb|EGZ18139.1| hypothetical protein PHYSODRAFT_315122 [Phytophthora sojae])

HSP 1 Score: 373.629 bits (958), Expect = 2.580e-121
Identity = 197/303 (65.02%), Postives = 236/303 (77.89%), Query Frame = 0
Query:   44 DKITFEMSLDDDINKEEMLDVFRFDPDYEANERTWKEIKKEILGESGSEADDESGSDEEEESDEEEGRQEGGAVGMPGGNQVQVVYDMTEQDLVNLKRTIYLTIMSSAGFEEATHKLMKLDLKNGQEMELCLMLVECCSQEKTYLKYYGFIACRICLLNRVYQDAFEEVFKEQYSTIHRLETNKLRNVAKIFAHLLYSDSLPWTVFECIHLNEEDTTSSSRIFIKILCQELSEQLGLAKLKERFSDPYMEQAFAGLFPTHDPRATRFAINFFVSIGLGGLTDGLRTHLKNYQKRLVEEAQAAA 346
            D+IT E +L+D I+ E+ LDVFRFDPDYE NE+ W  IKKEILGES S++D  SGSD++ + D++E   E     +   N V  + D TEQDLVNL+RTIYLTIMSS   EE  HKLMKL+++ GQE E+C ML+ECCSQE+TYL+YYG ++ R CL+ R YQDAF+E F EQYS IHRLETNKLRNVAK+FAHLL++D+LPWTVFE I LNEE+TTSSSRIFIKILCQELSE LG+  LKERF D  M+  F GLFP  +PR TRFAINFF SIGLGGLT  LR HLKN  K ++E+A+AAA
Sbjct:  266 DQITHETTLEDKIDCEDKLDVFRFDPDYEKNEQMWSAIKKEILGESDSDSDSSSGSDDDGDDDDDEDESEQP---VQTDNNV-AIQDYTEQDLVNLRRTIYLTIMSSITHEECAHKLMKLNIRPGQEKEICSMLIECCSQERTYLRYYGLLSERFCLIKREYQDAFDECFAEQYSLIHRLETNKLRNVAKLFAHLLFTDALPWTVFEYIRLNEEETTSSSRIFIKILCQELSEHLGMKTLKERFLDEIMQPTFGGLFPKDNPRNTRFAINFFTSIGLGGLTTDLREHLKNAPKMIMEQAKAAA 564          
The following BLAST results are available for this feature:
BLAST of EWM20639.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100435|gb|EWM20639.1|0.000e+0100.00Initiation factor eIF-4 gamma, MA3 [Nannochloropsi... [more]
gi|635370948|emb|CCI40851.1|4.590e-12461.82unnamed protein product [Albugo candida][more]
gi|1173944196|gb|OQR92959.1|6.953e-12462.50nucampholin [Thraustotheca clavata][more]
gi|301097326|ref|XP_002897758.1|6.390e-12365.68nucampholin [Phytophthora infestans T30-4] >gi|262... [more]
gi|675180653|ref|XP_008899211.1|8.391e-12264.85hypothetical protein PPTG_06917 [Phytophthora para... [more]
gi|676387143|ref|XP_009036850.1|1.036e-12162.37hypothetical protein AURANDRAFT_987, partial [Aure... [more]
gi|568027839|gb|ETM01784.1|1.296e-12164.85hypothetical protein L917_01665, partial [Phytopht... [more]
gi|567998656|gb|ETL48721.1|1.428e-12164.85hypothetical protein L916_01704, partial [Phytopht... [more]
gi|566032624|gb|ETI55535.1|1.428e-12164.85hypothetical protein F443_01814, partial [Phytopht... [more]
gi|695417731|ref|XP_009527197.1|2.580e-12165.02hypothetical protein PHYSODRAFT_315122 [Phytophtho... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10065rna10065Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications