EWM20640.1, cds10032 (CDS) Nannochloropsis gaditana

Overview
NameEWM20640.1
Unique Namecds10032
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:47110..47145 -
Alignment locationKK037261.1:46907..46960 -
Alignment locationKK037261.1:46564..46668 -
Alignment locationKK037261.1:46350..46413 -
Alignment locationKK037261.1:46099..46164 -
Alignment locationKK037261.1:45807..45865 -
Alignment locationKK037261.1:45549..45644 -
Alignment locationKK037261.1:45069..45182 -
Alignment locationKK037261.1:44787..44879 -
Alignment locationKK037261.1:44516..44644 -
Alignment locationKK037261.1:44247..44363 -
Alignment locationKK037261.1:43996..44059 -
Alignment locationKK037261.1:43807..43871 -
Alignment locationKK037261.1:43422..43535 -
Alignment locationKK037261.1:43196..43258 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20640.1
ProductRNA helicase,ATP-dependent, DEAD-box type
Orig transcript idgnl|cribi|Naga_100228g7.4657.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:47110..47145 -
KK037261.1supercontigKK037261.1:46907..46960 -
KK037261.1supercontigKK037261.1:46564..46668 -
KK037261.1supercontigKK037261.1:46350..46413 -
KK037261.1supercontigKK037261.1:46099..46164 -
KK037261.1supercontigKK037261.1:45807..45865 -
KK037261.1supercontigKK037261.1:45549..45644 -
KK037261.1supercontigKK037261.1:45069..45182 -
KK037261.1supercontigKK037261.1:44787..44879 -
KK037261.1supercontigKK037261.1:44516..44644 -
KK037261.1supercontigKK037261.1:44247..44363 -
KK037261.1supercontigKK037261.1:43996..44059 -
KK037261.1supercontigKK037261.1:43807..43871 -
KK037261.1supercontigKK037261.1:43422..43535 -
KK037261.1supercontigKK037261.1:43196..43258 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|585100438|gb|EWM20640.1| (RNA helicase,ATP-dependent, DEAD-box type [Nannochloropsis gaditana])

HSP 1 Score: 858.596 bits (2217), Expect = 0.000e+0
Identity = 412/412 (100.00%), Postives = 412/412 (100.00%), Query Frame = 0
Query:    1 MQTSNGDHGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYCV 412
            MQTSNGDHGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYCV
Sbjct:    1 MQTSNGDHGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYCV 412          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|698793498|ref|XP_009829781.1| (DEAD-box ATP-dependent RNA helicase 8 [Aphanomyces astaci] >gi|574115348|gb|ETV80834.1| DEAD-box ATP-dependent RNA helicase 8 [Aphanomyces astaci])

HSP 1 Score: 728.013 bits (1878), Expect = 0.000e+0
Identity = 336/409 (82.15%), Postives = 380/409 (92.91%), Query Frame = 0
Query:    3 TSNGDHGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            TS   HG++++WK+ L  P+ DTR QTEDVT  KG DF DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD TK HIQV++LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLYN VH+LVGTPGRI+DLA+KGVADLS+C TVIMDEADKLLSPEFQP+LE+L+ H  P RQI LFSATFPV VK+FKDK+I+NPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELG+SCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGRFGHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:   12 TSTNVHGDDDDWKRSLKAPEKDTRFQTEDVTNVKGNDFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTTKNHIQVMILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKSFKDKYIDNPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 420          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|673039003|ref|XP_008873462.1| (DEAD-box ATP-dependent RNA helicase 6 [Aphanomyces invadans] >gi|574470892|gb|ETV97901.1| DEAD-box ATP-dependent RNA helicase 6 [Aphanomyces invadans])

HSP 1 Score: 724.161 bits (1868), Expect = 0.000e+0
Identity = 334/403 (82.88%), Postives = 377/403 (93.55%), Query Frame = 0
Query:    9 GEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            G++++WK+ L  P+ DTR QTEDVT  KG DF DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD TK HIQV++LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLYN VH+LVGTPGRI+DLA+KGVADLS+C TVIMDEADKLLSPEFQP+LE+L+ H  P RQI LFSATFPV VK+FKDK+IENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELG+SCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGRFGHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:   20 GDDDDWKRTLKAPEKDTRFQTEDVTNVKGNDFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTTKAHIQVMILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKSFKDKYIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 422          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|675209495|ref|XP_008913632.1| (DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica INRA-310] >gi|566010806|gb|ETI33717.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica P1569] >gi|567948310|gb|ETK74059.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica] >gi|567976974|gb|ETL27485.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica] >gi|568006478|gb|ETL80734.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica] >gi|568036315|gb|ETM33927.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica] >gi|568086184|gb|ETN01077.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica INRA-310] >gi|570314551|gb|ETO62499.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica P1976] >gi|570938326|gb|ETP03583.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica CJ01A1] >gi|570968612|gb|ETP31731.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora parasitica P10297] >gi|970647991|gb|KUF87657.1| DEAD-box ATP-dependent RNA helicase 8 [Phytophthora nicotianae] >gi|970648363|gb|KUF87925.1| hypothetical protein AM588_10002705 [Phytophthora nicotianae])

HSP 1 Score: 722.62 bits (1864), Expect = 0.000e+0
Identity = 334/409 (81.66%), Postives = 375/409 (91.69%), Query Frame = 0
Query:    3 TSNGDHGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            T      +EENWK  L +P+ DTRVQTEDVT  KG +F DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K+HIQVL+LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLY  VH+LVGTPGR++DLA+KGVADLS+C TVIMDEADKLLSPEFQP+LE+LL H    RQI LFSATFPV VK FKD+ +ENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELGYSCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGR+GHLGLAIN+ITYDDRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:    2 TQQQSTNDEENWKASLKRPEKDTRVQTEDVTNVKGNEFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKKHIQVLILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYQTVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQICLFSATFPVTVKAFKDRFVENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYDDRFNLYRIEQELGTEIRPIPPVIDRNLYC 410          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|1214711289|gb|OWZ22310.1| (DEAD/DEAH box RNA helicase [Phytophthora megakarya])

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 332/404 (82.18%), Postives = 374/404 (92.57%), Query Frame = 0
Query:    8 HGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
              +EENWK  L +P+ DTRVQTEDVT  KG +F DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K+HIQVL+LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLY  VH+LVGTPGR++DLA+KGVADLS+C TVIMDEADKLLSPEFQP+LE+LL H    RQI LFSATFPV VK FKD+ +ENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELGYSCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGR+GHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:    4 QADEENWKASLKRPEKDTRVQTEDVTNVKGNEFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKKHIQVLILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYQTVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQICLFSATFPVTVKAFKDRFVENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 407          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|813150925|ref|XP_012201109.1| (DEAD-box ATP-dependent RNA helicase 8 [Saprolegnia parasitica CBS 223.65] >gi|641534336|gb|KDO28289.1| DEAD-box ATP-dependent RNA helicase 8 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 334/403 (82.88%), Postives = 374/403 (92.80%), Query Frame = 0
Query:    9 GEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            G+E++WK  L  P  DTR QTEDVT  KG DF DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K +IQV++LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLYN VH+LVGTPGRI+DLA+KGVADLSKC TVIMDEADKLLSPEFQP+LE+L+ H  P RQI LFSATFPV VK FKDK+IENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELG+SCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGRFGHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:   18 GDEDDWKTGLKAPTKDTRFQTEDVTNVKGNDFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKPYIQVMILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLANKGVADLSKCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKAFKDKYIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 420          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|301123369|ref|XP_002909411.1| (DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4] >gi|262100173|gb|EEY58225.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4])

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 332/409 (81.17%), Postives = 375/409 (91.69%), Query Frame = 0
Query:    3 TSNGDHGEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            T      +EENWK  L +P+ DTRVQTEDVT  KG +F DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K+HIQVL+LVPTRELALQTS+IVKE+GKHM ++CMVSTGGT+LKDDIMRLY  VH+LVGTPGR++DLA+KGVADLS+C TVIMDEADKLLSPEFQP+LE+LL H    RQI LFSATFPV VK FKD+ +ENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELGYSCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGR+GHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:    2 TQQQSTNDEENWKASLKRPEKDTRVQTEDVTNVKGNEFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKKHIQVLILVPTRELALQTSAIVKEIGKHMGIECMVSTGGTSLKDDIMRLYQTVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQICLFSATFPVTVKAFKDRFVENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 410          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|669139960|ref|XP_008605548.1| (DEAD-box ATP-dependent RNA helicase 8 [Saprolegnia diclina VS20] >gi|530742462|gb|EQC40704.1| DEAD-box ATP-dependent RNA helicase 8 [Saprolegnia diclina VS20])

HSP 1 Score: 720.694 bits (1859), Expect = 0.000e+0
Identity = 334/403 (82.88%), Postives = 374/403 (92.80%), Query Frame = 0
Query:    9 GEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            G+E++WK  L  P  DTR QTEDVT  KG DF DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K +IQV++LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLYN VH+LVGTPGRI+DLA+KGVADLSKC TVIMDEADKLLSPEFQP+LE+L+ H  P RQI LFSATFPV VK FKDK+IENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELG+SCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGRFGHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:   18 GDEDDWKTGLKAPTKDTRYQTEDVTNVKGNDFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKPYIQVMILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLANKGVADLSKCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKAFKDKYIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 420          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|695369286|ref|XP_009514016.1| (hypothetical protein PHYSODRAFT_283996 [Phytophthora sojae] >gi|348686927|gb|EGZ26741.1| hypothetical protein PHYSODRAFT_283996 [Phytophthora sojae])

HSP 1 Score: 719.924 bits (1857), Expect = 0.000e+0
Identity = 332/403 (82.38%), Postives = 374/403 (92.80%), Query Frame = 0
Query:    9 GEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
             +EENWK  L +P+ DTRVQTEDVT  KG +F DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K+HIQVL+LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLY  VH+LVGTPGR++DLA+KGVADLS+C TVIMDEADKLLSPEFQP+LE+LL H    RQI LFSATFPV VK FKD+ +ENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELGYSCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGR+GHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:   10 ADEENWKASLKRPEKDTRVQTEDVTNVKGNEFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKKHIQVLILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYQTVHILVGTPGRVMDLANKGVADLSQCSTVIMDEADKLLSPEFQPLLEQLLNHTAKQRQICLFSATFPVTVKAFKDRFVENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGYSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRYGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 412          
BLAST of EWM20640.1 vs. NCBI_GenBank
Match: gi|1173951986|gb|OQR99751.1| (DEAD/DEAH box RNA helicase [Achlya hypogyna])

HSP 1 Score: 719.153 bits (1855), Expect = 0.000e+0
Identity = 333/403 (82.63%), Postives = 374/403 (92.80%), Query Frame = 0
Query:    9 GEEENWKKELVKPKADTRVQTEDVTMTKGQDFSDYFLKRELLMGIYEKGFEKPSPVQEEAIPILLSGRNVLARAKNGTGKTAAFIIPCLEKTDVTKQHIQVLMLVPTRELALQTSSIVKEMGKHMNVQCMVSTGGTTLKDDIMRLYNVVHVLVGTPGRILDLADKGVADLSKCHTVIMDEADKLLSPEFQPILERLLAHCMPNRQIGLFSATFPVAVKTFKDKHIENPYEINLMDELTLRGITQYYAFVEERQKVHCLNTLFSKLEINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMQQSHRNRVFHEFRNGGTRHLVSSDLFTRGIDIQSVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLITYDDRFNLFRIEQELGTEIKPIPRDIDRSLYC 411
            G++++WK  L  P  DTR QTEDVT  KG DF DYFLKRELLMGI+EKGFE+PSP+QEEA+PI+L+GRNV+ARAKNGTGKTAAFIIPCLEKTD +K +IQV++LVPTRELALQTS+IVKE+GKHM V+CMVSTGGT+LKDDIMRLYN VH+LVGTPGRI+DLA+KGVADLSKC TVIMDEADKLLSPEFQP+LE+L+ H  P RQI LFSATFPV VK FKDK+IENPYEINLMDELTL+G++Q+YAFVEERQKVHCLNTLFSKL+INQSIIFCNSVNRVELLAKK+TELG+SCFYIHAKM Q+HRNRVFHEFRNG TRHLV SDLFTRGIDIQ+VNVVINFDFPK +ETYLHRIGRSGRFGHLGLAIN+ITY+DRFNL+RIEQELGTEI+PIP  IDR+LYC
Sbjct:   14 GDDDDWKTGLKAPTKDTRFQTEDVTNVKGNDFEDYFLKRELLMGIFEKGFERPSPIQEEAVPIILAGRNVMARAKNGTGKTAAFIIPCLEKTDTSKPYIQVMILVPTRELALQTSAIVKEIGKHMGVECMVSTGGTSLKDDIMRLYNTVHILVGTPGRIMDLANKGVADLSKCSTVIMDEADKLLSPEFQPLLEQLVNHTAPGRQICLFSATFPVTVKAFKDKYIENPYEINLMDELTLKGVSQFYAFVEERQKVHCLNTLFSKLDINQSIIFCNSVNRVELLAKKVTELGFSCFYIHAKMNQAHRNRVFHEFRNGATRHLVCSDLFTRGIDIQTVNVVINFDFPKNSETYLHRIGRSGRFGHLGLAINMITYEDRFNLYRIEQELGTEIRPIPPVIDRNLYC 416          
The following BLAST results are available for this feature:
BLAST of EWM20640.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100438|gb|EWM20640.1|0.000e+0100.00RNA helicase,ATP-dependent, DEAD-box type [Nannoch... [more]
gi|698793498|ref|XP_009829781.1|0.000e+082.15DEAD-box ATP-dependent RNA helicase 8 [Aphanomyces... [more]
gi|673039003|ref|XP_008873462.1|0.000e+082.88DEAD-box ATP-dependent RNA helicase 6 [Aphanomyces... [more]
gi|675209495|ref|XP_008913632.1|0.000e+081.66DEAD-box ATP-dependent RNA helicase 8 [Phytophthor... [more]
gi|1214711289|gb|OWZ22310.1|0.000e+082.18DEAD/DEAH box RNA helicase [Phytophthora megakarya... [more]
gi|813150925|ref|XP_012201109.1|0.000e+082.88DEAD-box ATP-dependent RNA helicase 8 [Saprolegnia... [more]
gi|301123369|ref|XP_002909411.1|0.000e+081.17DEAD/DEAH box RNA helicase, putative [Phytophthora... [more]
gi|669139960|ref|XP_008605548.1|0.000e+082.88DEAD-box ATP-dependent RNA helicase 8 [Saprolegnia... [more]
gi|695369286|ref|XP_009514016.1|0.000e+082.38hypothetical protein PHYSODRAFT_283996 [Phytophtho... [more]
gi|1173951986|gb|OQR99751.1|0.000e+082.63DEAD/DEAH box RNA helicase [Achlya hypogyna][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10063rna10063Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications