EWM20647.1, cds10026 (CDS) Nannochloropsis gaditana

Overview
NameEWM20647.1
Unique Namecds10026
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:15484..15648 -
Alignment locationKK037261.1:15078..15194 -
Alignment locationKK037261.1:14773..14904 -
Alignment locationKK037261.1:14414..14533 -
Alignment locationKK037261.1:14188..14259 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20647.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100289g4.2203.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:15484..15648 -
KK037261.1supercontigKK037261.1:15078..15194 -
KK037261.1supercontigKK037261.1:14773..14904 -
KK037261.1supercontigKK037261.1:14414..14533 -
KK037261.1supercontigKK037261.1:14188..14259 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20647.1 vs. NCBI_GenBank
Match: gi|585100446|gb|EWM20647.1| (hypothetical protein Naga_100289g4 [Nannochloropsis gaditana])

HSP 1 Score: 408.297 bits (1048), Expect = 3.667e-144
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0
Query:    1 MDSSLAVSSTFPRFSFLRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQAPS 201
            MDSSLAVSSTFPRFSFLRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQAPS
Sbjct:    1 MDSSLAVSSTFPRFSFLRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQAPS 201          
BLAST of EWM20647.1 vs. NCBI_GenBank
Match: gi|553185284|ref|XP_005854226.1| (hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526] >gi|553189756|ref|XP_005855066.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422293989|gb|EKU21289.1| hypothetical protein NGA_0223402 [Nannochloropsis gaditana CCMP526] >gi|422294833|gb|EKU22133.1| hypothetical protein NGA_0223401 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 359.377 bits (921), Expect = 2.075e-123
Identity = 179/183 (97.81%), Postives = 179/183 (97.81%), Query Frame = 0
Query:   19 TVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQAPS 201
            TVTKREARQIFEQFPFMKTTNVWKRFIETGE ADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETF   QWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQAPS
Sbjct:  117 TVTKREARQIFEQFPFMKTTNVWKRFIETGEVADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDFLDDLKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETF---QWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQAPS 296          
BLAST of EWM20647.1 vs. NCBI_GenBank
Match: gi|585110849|gb|EWM28447.1| (hypothetical protein Naga_100627g1 [Nannochloropsis gaditana])

HSP 1 Score: 119.013 bits (297), Expect = 4.465e-31
Identity = 56/105 (53.33%), Postives = 77/105 (73.33%), Query Frame = 0
Query:   95 LKANDASSPELVASAKRGSPRAIATLQQKFVDQYLGGIDLETFQNPQWVDRARDNFFADENLLRAVGDESVLSNLRNPNLRPLKVSEYEEADPARILSSLTGNQA 199
            LKAND S+P L  + + G PRA+ATLQQ F D+YLGG+DL+ FQ+ +W+++AR  FFA+E+LLR V D  +L  LRNP+L+  K SE   ADP+R+L+SL  + A
Sbjct:    3 LKANDPSAPRLFDAVREGDPRAVATLQQMFADRYLGGVDLDAFQDNEWIEKARARFFANEDLLRLVDDNDILDILRNPDLKLHKASEMGNADPSRLLNSLMESHA 107          
BLAST of EWM20647.1 vs. NCBI_GenBank
Match: gi|585110847|gb|EWM28446.1| (hypothetical protein Naga_100591g1 [Nannochloropsis gaditana])

HSP 1 Score: 78.5666 bits (192), Expect = 1.228e-14
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 0
Query:   16 FLRTVTKREARQIFEQFPFMKTTNVWKRFIETGEAADEDAAAAAMVEAVREMGATLIEARSITKDADTVVQHANDF 91
             L +VTK EA  IFE F  MKTT  WK F E+G+  DE+A A+AM+++V+EMG  ++ AR  TKDAD+V    ++F
Sbjct:  111 MLESVTKDEAGLIFENFKVMKTTKAWKAFQESGDTEDEEAVASAMIKSVQEMGQIMLGARYFTKDADSVTAVTDEF 186          
The following BLAST results are available for this feature:
BLAST of EWM20647.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585100446|gb|EWM20647.1|3.667e-144100.00hypothetical protein Naga_100289g4 [Nannochloropsi... [more]
gi|553185284|ref|XP_005854226.1|2.075e-12397.81hypothetical protein NGA_0223401 [Nannochloropsis ... [more]
gi|585110849|gb|EWM28447.1|4.465e-3153.33hypothetical protein Naga_100627g1 [Nannochloropsi... [more]
gi|585110847|gb|EWM28446.1|1.228e-1450.00hypothetical protein Naga_100591g1 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10057rna10057Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications