EWM20664.1, cds10011 (CDS) Nannochloropsis gaditana

Overview
NameEWM20664.1
Unique Namecds10011
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:82757..83186 -
Alignment locationKK037260.1:82378..82505 -
Alignment locationKK037260.1:82024..82127 -
Alignment locationKK037260.1:81828..81913 -
Alignment locationKK037260.1:81485..81528 -
Alignment locationKK037260.1:81273..81362 -
Alignment locationKK037260.1:80828..81043 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20664.1
ProductCyclic nucleotide-binding domain protein
Orig transcript idgnl|cribi|Naga_100172g7.4637.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:82757..83186 -
KK037260.1supercontigKK037260.1:82378..82505 -
KK037260.1supercontigKK037260.1:82024..82127 -
KK037260.1supercontigKK037260.1:81828..81913 -
KK037260.1supercontigKK037260.1:81485..81528 -
KK037260.1supercontigKK037260.1:81273..81362 -
KK037260.1supercontigKK037260.1:80828..81043 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR018490cNMP-bd-like
IPR000595cNMP-bd_dom
IPR006916Popeye_prot
IPR014710RmlC-like_jellyroll
Homology
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|585100469|gb|EWM20664.1| (Cyclic nucleotide-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 742.651 bits (1916), Expect = 0.000e+0
Identity = 365/365 (100.00%), Postives = 365/365 (100.00%), Query Frame = 0 
Query:    1 MSANIRRGITTTCRLLTAATAAQRRRSAAEAFSTARPLSTRRYSSSIRLLTINLSTAKGTSRSSAGRDLIRCFYQNSSRQLSSTTSTSPSVQAANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGVGAWIGEINFLDQEKKAKGAIATFVAESPVRYLCWEHKRLRGLLSEDTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATVGSAGERDGRVLYKAALHESILHSFTIGAS 365
            MSANIRRGITTTCRLLTAATAAQRRRSAAEAFSTARPLSTRRYSSSIRLLTINLSTAKGTSRSSAGRDLIRCFYQNSSRQLSSTTSTSPSVQAANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGVGAWIGEINFLDQEKKAKGAIATFVAESPVRYLCWEHKRLRGLLSEDTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATVGSAGERDGRVLYKAALHESILHSFTIGAS
Sbjct:    1 MSANIRRGITTTCRLLTAATAAQRRRSAAEAFSTARPLSTRRYSSSIRLLTINLSTAKGTSRSSAGRDLIRCFYQNSSRQLSSTTSTSPSVQAANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGVGAWIGEINFLDQEKKAKGAIATFVAESPVRYLCWEHKRLRGLLSEDTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATVGSAGERDGRVLYKAALHESILHSFTIGAS 365
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|553192632|ref|XP_005855612.1| (cyclic nucleotide-binding domain protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293443|gb|EKU20743.1| cyclic nucleotide-binding domain protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 442.965 bits (1138), Expect = 1.946e-152
Identity = 231/301 (76.74%), Postives = 231/301 (76.74%), Query Frame = 0 
Query:   76 NSSRQLSSTTSTSPSVQAANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGV----------------------------------------GAWIGEINFLDQEKKAKGAIATFVAESPVRYLCWEHKRLRGLLSEDTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATV 336
            NSSRQLSSTTSTSPSVQAANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGV                                        GAWIGEINFLDQEKK                              DTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATV
Sbjct:    1 NSSRQLSSTTSTSPSVQAANPPPPAAKFGPPKGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGVGGKEGQRRREGKQGVGGIPIQSFSTFPGARETEINQGMDSGAWIGEINFLDQEKK------------------------------DTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATV 271
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|971510589|dbj|GAQ87613.1| (hypothetical protein KFL_003650040 [Klebsormidium nitens])

HSP 1 Score: 130.954 bits (328), Expect = 4.760e-31
Identity = 73/224 (32.59%), Postives = 122/224 (54.46%), Query Frame = 0 
Query:  126 MTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLL--STAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG-------VGAWIGEINFLDQEKKAKGAIATFVAESPVRYLCWEHKRLRGLLSEDTNLSRSVTHAINGALIGKLLSFTSHTKEANSEAYEEIMATVGSAG 340
            M D+  LRS  +    CG+ +N+    P+ IP++WG VFL +N T I  LL E  E+ FS +EL++FE  F  + +T  QF++L+  + AEW+++P    +  +G+ +D + LI  G     VNG        G+ +GE   L +   A   + T V   P + + W+  +LR +L+ D +L  SV+  IN  L  K L+  + +K+ + E Y++++  + SAG
Sbjct:    1 MKDMLFLRSFMVCGGICGITFNMLQPTPMYIPSMWGCVFLLINLTQIGILLLERREVEFSSDELDVFELEFQRHGVTACQFKKLMRYAEAEWRELPTDHVILKQGDQVDDIYLIISGCAEVTVNGGAVGQVQRGSLVGETALLAKGHLAGATVTTLV---PTKVVVWDKHKLRQVLANDPSLILSVSATINSDLATK-LAKRNLSKDRSLETYKDVLGGICSAG 220
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|401405879|ref|XP_003882389.1| (conserved hypothetical protein [Neospora caninum Liverpool] >gi|325116804|emb|CBZ52357.1| conserved hypothetical protein [Neospora caninum Liverpool] >gi|820690582|tpe|CEL66327.1| TPA: hypothetical protein BN1204_021450 [Neospora caninum Liverpool])

HSP 1 Score: 117.087 bits (292), Expect = 7.468e-25
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 0 
Query:  107 KGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG 248
            + G+ L+  G+  +L    M D+ LLR   L+A  C   YN T  P +   A W +VF ++N  M+   L E  E+ F+ +EL++FE++FLP  L+P +FR LLS  +W+ +PAGT +A  GEP  +L+ I RG+V  + +G
Sbjct: 1308 QNGNVLVTMGSVLSLTGTVMADMRLLRGFNLLAGICFFSYNYTRRPSMTDAAAWNVVFFSLNFFMLYRYLTEHNEVGFTNDELDVFEKYFLPAGLSPRRFRTLLSVGQWETLPAGTEIARPGEPAKKLLFILRGRVDVYQHG 1449
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|1200256936|gb|OUT80086.1| (hypothetical protein CBB83_02765 [Rhodospirillaceae bacterium TMED23])

HSP 1 Score: 109.383 bits (272), Expect = 1.410e-24
Identity = 69/210 (32.86%), Postives = 113/210 (53.81%), Query Frame = 0 
Query:  114 HFGNTCALLSFSMTDVFLLRSLALVATTCGVVYN-LTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNGV-------GAWIGEINFLDQEKKAKGAIATFVAESPVRYLCWEHKRLRGLLSEDTNLSRSVTHAINGALIGKLL 315
            H     A LSF + D+ LLRSLA+ +   GV +N L    P+ IP +W  +F+ +NG  I+ +  E   I+F+ EELEL+E  F  +  T  +F +L+  AEW+ V  G   A +G+ L  L L+  G+V+   +G        G+ IGE++F+    K   A AT +A+   R + W  ++L+ LL+ + ++  ++ H  +  L  KL+
Sbjct:   11 HVSFALAALSFFVRDMILLRSLAIASGVVGVFFNYLVSFGPMWIPIMWLSIFICINGYRIIGIFLERRSISFTDEELELYETIFQNF--TSLEFMKLMRIAEWRSVDIGYKFAEQGDDLTGLSLLFNGEVSIERDGKHLGIGRDGSMIGEMSFI----KGGSANATVLAKCKCRCVYWPKEKLKALLNRNPSMDVAMKHVFSLDLTRKLV 214
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|675125500|ref|XP_008884637.1| (hypothetical protein HHA_203520 [Hammondia hammondi] >gi|661336751|gb|KEP64883.1| hypothetical protein HHA_203520 [Hammondia hammondi])

HSP 1 Score: 115.161 bits (287), Expect = 2.949e-24
Identity = 55/142 (38.73%), Postives = 83/142 (58.45%), Query Frame = 0 
Query:  107 KGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG 248
            + G+ L+  G+  +L    M D+ LLR   L+A  C   YN T  P +   A W +VF  +N  M+   L E  E+ F+ +EL++FE++FLP  L+P +FR LLS   W+ +PAG+ L   GEP+ +LV I RG+V  + +G
Sbjct: 1305 QNGNVLVTTGSVLSLTGTVMADMRLLRGFNLLAGICFFSYNYTRRPSMTDAAAWNVVFFTLNFFMLYRYLTEHNEVGFTNDELDVFEKYFLPAGLSPRRFRTLLSIGRWETLPAGSELTRPGEPVKKLVFILRGRVDVYQHG 1446
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|672265814|gb|KFG39366.1| (hypothetical protein TGFOU_203520B, partial [Toxoplasma gondii FOU])

HSP 1 Score: 114.005 bits (284), Expect = 5.596e-24
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 0 
Query:  107 KGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG 248
            + G+ L+  G+  +L    M D+ LLR   L+A  C   YN T  P +   A W +VF  +N  M+   L E  E+ F+ +EL++FE++FLP  L+P +FR LL+   W+ +PAG+ L   GEP+ +LV I RG+V  + +G
Sbjct:   33 QNGNVLVTTGSVLSLTGTVMADMRLLRGFNLLAGICFFSYNYTRRPSMTDAAAWNVVFFTLNFFMLYRYLTEHNEVGFTNDELDVFEKYFLPAGLSPRRFRTLLTIGRWETLPAGSELTRPGEPVKKLVFILRGRVDVYQHG 174
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|1005156129|gb|KYF44276.1| (hypothetical protein TGARI_203520 [Toxoplasma gondii ARI])

HSP 1 Score: 114.005 bits (284), Expect = 8.717e-24
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 0 
Query:  107 KGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG 248
            + G+ L+  G+  +L    M D+ LLR   L+A  C   YN T  P +   A W +VF  +N  M+   L E  E+ F+ +EL++FE++FLP  L+P +FR LL+   W+ +PAG+ L   GEP+ +LV I RG+V  + +G
Sbjct: 1305 QNGNVLVTTGSVLSLTGTVMADMRLLRGFNLLAGICFFSYNYTRRPSMTDAAAWNVVFFTLNFFMLYRYLTEHNEVGFTNDELDVFEKYFLPAGLSPRRFRTLLTIGRWETLPAGSELTRPGEPVKKLVFILRGRVDVYQHG 1446
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|1008948667|gb|KYK66461.1| (hypothetical protein TGPRC2_203520 [Toxoplasma gondii TgCatPRC2])

HSP 1 Score: 113.62 bits (283), Expect = 8.801e-24
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 0 
Query:  107 KGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG 248
            + G+ L+  G+  +L    M D+ LLR   L+A  C   YN T  P +   A W +VF  +N  M+   L E  E+ F+ +EL++FE++FLP  L+P +FR LL+   W+ +PAG+ L   GEP+ +LV I RG+V  + +G
Sbjct: 1305 QNGNVLVTTGSVLSLTGTVMADMRLLRGFNLLAGICFFSYNYTRRPSMTDAAAWNVVFFTLNFFMLYRYLTEHNEVGFTNDELDVFEKYFLPAGLSPRRFRTLLTIGRWETLPAGSELTRPGEPVKKLVFILRGRVDVYQHG 1446
[Close]
BLAST of EWM20664.1 vs. NCBI_GenBank
Match: gi|237836673|ref|XP_002367634.1| (hypothetical protein TGME49_203520 [Toxoplasma gondii ME49] >gi|527313487|gb|EPT30115.1| hypothetical protein TGME49_203520 [Toxoplasma gondii ME49])

HSP 1 Score: 113.62 bits (283), Expect = 8.881e-24
Identity = 54/142 (38.03%), Postives = 83/142 (58.45%), Query Frame = 0 
Query:  107 KGGHALLHFGNTCALLSFSMTDVFLLRSLALVATTCGVVYNLTHSPPLRIPALWGMVFLAVNGTMILSLLFEDEEIAFSKEELELFEEHFLPYTLTPTQFRRLLSTAEWKDVPAGTALAVEGEPLDRLVLIARGKVAAFVNG 248
            + G+ L+  G+  +L    M D+ LLR   L+A  C   YN T  P +   A W +VF  +N  M+   L E  E+ F+ +EL++FE++FLP  L+P +FR LL+   W+ +PAG+ L   GEP+ +LV I RG+V  + +G
Sbjct: 1305 QNGNVLVTTGSVLSLTGTVMADMRLLRGFNLLAGICFFSYNYTRRPSMTDAAAWNVVFFTLNFFMLYRYLTEHNEVGFTNDELDVFEKYFLPAGLSPRRFRTLLTIGRWETLPAGSELTRPGEPVKKLVFILRGRVDVYQHG 1446
The following BLAST results are available for this feature:
BLAST of EWM20664.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100469|gb|EWM20664.1|0.000e+0100.00Cyclic nucleotide-binding domain protein [Nannochl... [more]
gi|553192632|ref|XP_005855612.1|1.946e-15276.74cyclic nucleotide-binding domain protein, partial ... [more]
gi|971510589|dbj|GAQ87613.1|4.760e-3132.59hypothetical protein KFL_003650040 [Klebsormidium ... [more]
gi|401405879|ref|XP_003882389.1|7.468e-2538.73conserved hypothetical protein [Neospora caninum L... [more]
gi|1200256936|gb|OUT80086.1|1.410e-2432.86hypothetical protein CBB83_02765 [Rhodospirillacea... [more]
gi|675125500|ref|XP_008884637.1|2.949e-2438.73hypothetical protein HHA_203520 [Hammondia hammond... [more]
gi|672265814|gb|KFG39366.1|5.596e-2438.03hypothetical protein TGFOU_203520B, partial [Toxop... [more]
gi|1005156129|gb|KYF44276.1|8.717e-2438.03hypothetical protein TGARI_203520 [Toxoplasma gond... [more]
gi|1008948667|gb|KYK66461.1|8.801e-2438.03hypothetical protein TGPRC2_203520 [Toxoplasma gon... [more]
gi|237836673|ref|XP_002367634.1|8.881e-2438.03hypothetical protein TGME49_203520 [Toxoplasma gon... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10042rna10042Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications