NO04G00190.1, NO04G00190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO04G00190.1
Unique NameNO04G00190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length390
Alignment locationchr4:80845..81632 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:80845..81632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G00190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO04G00190NO04G00190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO04G00190.1NO04G00190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO04G00190.1.cds1NO04G00190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00190.1.cds2NO04G00190.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO04G00190.1.cds3NO04G00190.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO04G00190.1 ID=NO04G00190.1|Name=NO04G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGGCGGCACCGCCAAGGAATCGGTGGCATGGACCGAGAGTAGACAAAAT
ACGGGGCGCACGGCATATTACTTTCCCGGTAGCATTCGCCATGATTATTC
TTGTGGCGCTGCATACCTTTCCTAAATTTTATTCTGAAATATCGAACGCA
CCAAGTCAGGAGCTAGTCCGAGATTTAAACGAGGCTCCCCTCCCGGCCGA
GACTTTTACAGAAGCACAACTACAAAAAGAGATATCCAAAGCGTACGAGT
TAGGGCGACAAGCTGGTGTACAGGCTGCCACAGAAGCAGTTGAGAAAGAA
GAGCAAAGAATGGCCGGAAACAGCGAAAAAAAAAAAAAAAAGAGCTATCG
TCGCTGCCACTACTACAATAAGAGAAACAGCAGCATCTGA
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protein sequence of NO04G00190.1

>NO04G00190.1-protein ID=NO04G00190.1-protein|Name=NO04G00190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MAAPPRNRWHGPRVDKIRGARHITFPVAFAMIILVALHTFPKFYSEISNA
PSQELVRDLNEAPLPAETFTEAQLQKEISKAYELGRQAGVQAATEAVEKE
EQRMAGNSEKKKKKSYRRCHYYNKRNSSI*
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mRNA from alignment at chr4:80845..81632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO04G00190.1 ID=NO04G00190.1|Name=NO04G00190.1|organism=Nannochloropsis oceanica|type=mRNA|length=788bp|location=Sequence derived from alignment at chr4:80845..81632+ (Nannochloropsis oceanica)
ATGGCGGCACCGCCAAGGAATCGGTGGCATGGACCGAGAGTAGACAAAAT
ACGGGGCGCACGGCATGTAAGTGGGCTCTTGGACAAGTAGAAAAGTAAAC
CCTCCCATAAATCAAGAAAAGCTAATGTAGTTGTAGAATTGGATAAAGCT
TCCATCCACATATCCCTTCTCCATCCTTTTCCTGTCTCCAACCGCTCTTC
CCGTCTCTCCCCTCCTCCCCAATACATTCTCTCTCTAGATTACTTTCCCG
GTAGCATTCGCCATGATTATTCTTGTGGCGCTGCATACCTTTCCTAAATT
TTATTCTGAAATATCGAACGCACCAAGTCAGGAGCTAGTCCGAGATTTAA
ACGAGGTATGCAGGAAGGGATGGACGGAAAAGTACGAGTCAAGAACAGTG
GAAGTTGAGGAAGTAAGGGGAGGAAGGATTTGGAATGAGAACATACTCAA
GCTATAGCTTAGGTGATATAAAAATGGTAGAACTCTTATTTACTCGCAAG
TTTGTTGCCATCACACACCATGTCGCAACACACACCCATCCCGATGTCCT
CTTTCTCCCTACCCTCACCCAACACCGACAGGCTCCCCTCCCGGCCGAGA
CTTTTACAGAAGCACAACTACAAAAAGAGATATCCAAAGCGTACGAGTTA
GGGCGACAAGCTGGTGTACAGGCTGCCACAGAAGCAGTTGAGAAAGAAGA
GCAAAGAATGGCCGGAAACAGCGAAAAAAAAAAAAAAAAGAGCTATCGTC
GCTGCCACTACTACAATAAGAGAAACAGCAGCATCTGA
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Coding sequence (CDS) from alignment at chr4:80845..81632+

>NO04G00190.1 ID=NO04G00190.1|Name=NO04G00190.1|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at chr4:80845..81632+ (Nannochloropsis oceanica)
ATGGCGGCACCGCCAAGGAATCGGTGGCATGGACCGAGAGTAGACAAAAT
ACGGGGCGCACGGCATATTACTTTCCCGGTAGCATTCGCCATGATTATTC
TTGTGGCGCTGCATACCTTTCCTAAATTTTATTCTGAAATATCGAACGCA
CCAAGTCAGGAGCTAGTCCGAGATTTAAACGAGGCTCCCCTCCCGGCCGA
GACTTTTACAGAAGCACAACTACAAAAAGAGATATCCAAAGCGTACGAGT
TAGGGCGACAAGCTGGTGTACAGGCTGCCACAGAAGCAGTTGAGAAAGAA
GAGCAAAGAATGGCCGGAAACAGCGAAAAAAAAAAAAAAAAGAGCTATCG
TCGCTGCCACTACTACAATAAGAGAAACAGCAGCATCTGA
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Synonyms
Publications