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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr3 | genome | chr3:112122..113996 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO03G00350.1 vs.
Match: POM76672.1 (DNA-directed RNA polymerase II [Phytophthora palmivora var. palmivora]) HSP 1 Score: 273.1 bits (697), Expect = 1.200e-69 Identity = 153/340 (45.00%), Postives = 216/340 (63.53%), Query Frame = 0
Query: 1 MPNVRAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLVSFEVNSSVLNDEYLAHRLGLIPL----RSTNPRYKKVADLKDFRDCDCDLHCPRCSVELTLDVNYHTKKQQLARMEGFGEGGMEGEASGLPVNVTSADLTVTEDEEQQVWVEPAHFTSDAEKDRLGDPAQGGISIVQLGPGQAVRLTAIAKKGIGKEHAKWSPCAVATYTNEPILSINKEEHDKLSLEKKKQLVDCCPTKVFKLDER-ENVVVARPRKCIFCNECQTVSKALKAHQDDDFVVHLAANEEKFVFAVETTGALTAGEVVESALEIVLGKITEVQTQLVHIAR 336
MP+ R PK+EI EL+DDFI+F LS+TDASVANA+RRVMI+EVPTLAIDLVS E+N+SV+ DE+LAHRLG+IPL R N R + V +DCDCD +CP CSVE +LDV A ++VTS L + ++ P +F+S+ E L + G+ I +LGPGQ +RL+AIAK GIGKEHAKWSP AVAT+ +PI+++N+ S E+K +L CCPT+VF+ DE E V +C++C+EC ++ + K + +DD V + E+KF+F+VETTG L EVV AL+++ K++ ++ Q + +++
Sbjct: 835 MPHPRFPKIEIQELRDDFIRFELSETDASVANAIRRVMISEVPTLAIDLVSIEINTSVMTDEFLAHRLGMIPLNFDGRLENFRQRFVYS----QDCDCDENCPNCSVEFSLDVT----------------------ADNGVLSVTSEAL-----KSSDPYIRPVNFSSEEE---LNNTQDSGVIIAKLGPGQRLRLSAIAKLGIGKEHAKWSPVAVATFMYDPIITLNQAVLSTYSPEQKAELYKCCPTEVFETDENYEQFTVGDAMRCMYCDECVKLADSFKDNPEDDSAVSIRMREDKFIFSVETTGQLKPEEVVICALDLIREKLSSLKHQCLELSQ 1140
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO03G00350.1 ID=NO03G00350.1|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1282bp CAGGCTACTACTTGTGCAGCAACCACTGATTTTAGCGCGGGCGGGACTGT GTGTGGAAAGCTAGGGAGGGACAAGAGTATCTCTCCGCCTTGGTGCCTGC CTCAGCCCCTGCTCTGTCAACCAGCGGCACCTACACGTAAAGCCACCCTC TCGACAACGCTTCGACAACCCTAAAGATGCCGAACGTCCGCGCCCCTAAG CTGGAAATCCTAGAGCTAAAGGACGACTTTATCAAATTCATTCTCTCCGA CACGGATGCCTCTGTTGCCAATGCCTTGCGGCGGGTGATGATTGCCGAAG TCCCTACCTTGGCCATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTG CTGAATGACGAGTACCTCGCCCATCGCTTGGGCCTCATTCCCCTCCGCTC TACGAATCCGCGCTACAAGAAGGTGGCTGACCTCAAGGACTTTCGAGACT GCGATTGTGACTTGCATTGCCCCCGCTGCTCGGTCGAGCTGACGTTAGAT GTGAACTACCACACCAAGAAGCAGCAGCTGGCACGGATGGAGGGCTTCGG GGAGGGAGGGATGGAGGGAGAGGCCAGTGGCTTGCCCGTGAACGTGACGA GTGCGGACTTGACAGTGACAGAAGATGAGGAGCAGCAAGTGTGGGTAGAG CCGGCTCACTTCACGTCGGACGCAGAGAAAGACAGATTGGGTGACCCCGC CCAAGGCGGCATCAGCATCGTGCAACTCGGGCCCGGACAAGCCGTGCGTC TGACCGCCATAGCCAAGAAAGGCATAGGGAAAGAGCATGCCAAGTGGTCT CCTTGTGCTGTCGCCACTTACACCAACGAGCCGATCCTCAGTATCAACAA GGAGGAGCACGACAAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACT GCTGCCCAACCAAAGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTG GCCCGGCCGCGCAAGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAA GGCACTCAAGGCGCATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGA ACGAAGAGAAATTTGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCA GGGGAGGTGGTGGAGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGA GGTGCAGACTCAGCTGGTGCACATAGCGAGGACAGGGGTCGTGTAGGGAG GGATGGAGGGACGGAGGGATTGGGGGAGAGAAAAAGTAAAAGGATTAATT GGAGCATCGTGTGAGATGAAGGAGGGCGATTG back to topprotein sequence of NO03G00350.1 >NO03G00350.1-protein ID=NO03G00350.1-protein|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp MPNVRAPKLEILELKDDFIKFILSDTDASVANALRRVMIAEVPTLAIDLV SFEVNSSVLNDEYLAHRLGLIPLRSTNPRYKKVADLKDFRDCDCDLHCPR CSVELTLDVNYHTKKQQLARMEGFGEGGMEGEASGLPVNVTSADLTVTED EEQQVWVEPAHFTSDAEKDRLGDPAQGGISIVQLGPGQAVRLTAIAKKGI GKEHAKWSPCAVATYTNEPILSINKEEHDKLSLEKKKQLVDCCPTKVFKL DERENVVVARPRKCIFCNECQTVSKALKAHQDDDFVVHLAANEEKFVFAV ETTGALTAGEVVESALEIVLGKITEVQTQLVHIARTGVV* back to topmRNA from alignment at chr3:112122..113996+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO03G00350.1 ID=NO03G00350.1|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=mRNA|length=1875bp|location=Sequence derived from alignment at chr3:112122..113996+ (Nannochloropsis oceanica) CAGGCTACTACTTGTGCAGCAACCACTGATTTTAGCGCGGGCGGGACTGT
GTGTGGAAAGCTAGGGAGGGACAAGAGTATCTCTCCGCCTTGGTGCCTGC
CTCAGCCCCTGCTCTGTCAACCAGCGGCACCTACACGTAAAGCCACCCTC
TCGACAACGCTTCGACAACCCTAAAGATGCCGAACGTCCGCGCCCCTAAG
CTGGAAATCCTAGAGCTAAAGGTACTTGTCCTTCAATACTCATTCCCCCG
CTTCTTTCTCCCCTGCCCCACCCACCGACCAACCGACATACGCGCCTCAC
ATCACAGGACGACTTTATCAAATTCATTCTCTCCGACACGGATGCCTCTG
TTGCCAATGCCTTGCGGCGGGTGATGATTGCCGAAGTCCCTACCTTGGCC
ATCGATCTTGTGTCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGTA
CCTCGCCCATCGCTTGGGTAGGTAGCCACACACAACCAGAGAGCACGCTC
CGTTACCAGACACACATGATCCTCCTCACACTTCCTCCTACTCTCTGTAT
CTTCCACCTTGCAACCGTACAGCTCATCACTTACATACATGCAACGCCTC
TTTTACCCCCTTCCTTTTCCCCCCCTCCCTCCCCTTCCTCCCAGGCCTCA
TTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGGCTGACCTCAAG
GACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGCTGCTCGGTCGA
GCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCAGCTGGCACGGA
TGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCAGTGGCTTGCCC
GTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGATGAGGAGCAGCA
AGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGAGAAAGACAGAT
TGGGGTGAGCGCAGTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCC
TTCCTTCCTTCCTCCCTCCCTCCCTCCTTCCTTCCTTCCTTTCTTCTTCT
AGGTATAATTTCCGTAGCCACGACAATTTTATCCACTCACACTCCCCCCT
TCCTCCATTCCTCCCTTCCTCCCTCCCCTCCCTCCCCTCCCCGCAGTGAC
CCCGCCCAAGGCGGCATCAGCATCGTGCAACTCGGGCCCGGACAAGCCGT
GCGTCTGACCGCCATAGCCAAGAAAGGCATAGGGAAAGAGCATGCCAAGT
GGTCTCCTTGTGCTGTCGCCACTTACACCAACGAGCCGATCCTCAGTATC
AACAAGGAGGAGGTAGGCCTCTCCCTTCCTTCTCCTCCCTCCTTCCCTCA
TTCCCTCACCTCCCCCCTCTCAACCCCAACCTGAACCCCCTCCCTCCTCC
AGTCATGTCACGCTCTTTCCCTCCCCCCCTCTTTCCCTGCCTGCCCCCAG
CACGACAAGCTCAGCCTGGAGAAGAAGAAGCAGCTGGTGGACTGCTGCCC
AACCAAAGTCTTCAAGCTCGACGAGCGAGAAAATGTGGTGGTGGCCCGGC
CGCGCAAGTGCATTTTTTGCAACGAGTGCCAGACGGTGTCCAAGGCACTC
AAGGCGCATCAAGACGACGATTTTGTCGTGCATCTGGCAGCGAACGAAGA
GAAATTTGTCTTTGCCGTGGAGACGACGGGGGCCTTGACAGCAGGGGAGG
TGGTGGAGAGTGCGTTGGAGATAGTGCTGGGGAAGATCACGGAGGTGCAG
ACTCAGCTGGTGCACATAGCGAGGACAGGGGTCGTGTAGGGAGGGATGGA
GGGACGGAGGGATTGGGGGAGAGAAAAAGTAAAAGGATTAATTGGAGCAT
CGTGTGAGATGAAGGAGGGCGATTG back to topCoding sequence (CDS) from alignment at chr3:112122..113996+ >NO03G00350.1 ID=NO03G00350.1|Name=NO03G00350.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr3:112122..113996+ (Nannochloropsis oceanica) ATGCCGAACGTCCGCGCCCCTAAGCTGGAAATCCTAGAGCTAAAGGACGA CTTTATCAAATTCATTCTCTCCGACACGGATGCCTCTGTTGCCAATGCCT TGCGGCGGGTGATGATTGCCGAAGTCCCTACCTTGGCCATCGATCTTGTG TCGTTCGAAGTGAACTCCTCCGTGCTGAATGACGAGTACCTCGCCCATCG CTTGGGCCTCATTCCCCTCCGCTCTACGAATCCGCGCTACAAGAAGGTGG CTGACCTCAAGGACTTTCGAGACTGCGATTGTGACTTGCATTGCCCCCGC TGCTCGGTCGAGCTGACGTTAGATGTGAACTACCACACCAAGAAGCAGCA GCTGGCACGGATGGAGGGCTTCGGGGAGGGAGGGATGGAGGGAGAGGCCA GTGGCTTGCCCGTGAACGTGACGAGTGCGGACTTGACAGTGACAGAAGAT GAGGAGCAGCAAGTGTGGGTAGAGCCGGCTCACTTCACGTCGGACGCAGA GAAAGACAGATTGGGTGACCCCGCCCAAGGCGGCATCAGCATCGTGCAAC TCGGGCCCGGACAAGCCGTGCGTCTGACCGCCATAGCCAAGAAAGGCATA GGGAAAGAGCATGCCAAGTGGTCTCCTTGTGCTGTCGCCACTTACACCAA CGAGCCGATCCTCAGTATCAACAAGGAGGAGCACGACAAGCTCAGCCTGG AGAAGAAGAAGCAGCTGGTGGACTGCTGCCCAACCAAAGTCTTCAAGCTC GACGAGCGAGAAAATGTGGTGGTGGCCCGGCCGCGCAAGTGCATTTTTTG CAACGAGTGCCAGACGGTGTCCAAGGCACTCAAGGCGCATCAAGACGACG ATTTTGTCGTGCATCTGGCAGCGAACGAAGAGAAATTTGTCTTTGCCGTG GAGACGACGGGGGCCTTGACAGCAGGGGAGGTGGTGGAGAGTGCGTTGGA GATAGTGCTGGGGAAGATCACGGAGGTGCAGACTCAGCTGGTGCACATAG CGAGGACAGGGGTCGTGTAG back to top
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