NO25G00770.1, NO25G00770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00770.1
Unique NameNO25G00770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1830
Alignment locationchr25:211717..213546 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:211717..213546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00770.1 vs.
Match: XP_005854210.1 (peptidyl-prolyl cis-trans isomerase d-like protein [Nannochloropsis gaditana CCMP526]; EKU22149.1 peptidyl-prolyl cis-trans isomerase d-like protein [Nannochloropsis gaditana CCMP526]; EWM21609.1 peptidyl-prolyl cis-trans isomerase d [Nannochloropsis gaditana])

HSP 1 Score: 526.2 bits (1354), Expect = 1.000e-145
Identity = 274/452 (60.62%), Postives = 352/452 (77.88%), Query Frame = 0 
Query:    2 VARDKNTK----TMPLLSKQPSNLGCGSSKEDVVEDLTLQPDEEARQALCAALYKCTGPFKRMVSPLLPYPLVLNKLHRDFVEAEEMSGGSAEECMLTFAMKMEEPDTKTFLEDAEKRIRAEPKVYGEHLLEEEWINDFQAQVDYVPGLSKGKRLIDVEDAQQYAAFAMDMKGAGNKCFATKDFEMALTRYQQGVELLHNVECKEASAQQELTALLASLLTNQAIAGLRTGNWRVTITACDACLDINPQNLKARARRAEAYKCLGDIEKATTDLDWIVRLQCSDLLADHDVDTAQTLLSTAQKDAQKMMKDLQGMRIQESEVAKRMISGADFTANRENEKPSFLHPSSSSSTSSGSPSRMHAQNQFSSALAEAKKSTKIITEKLIDEVVALEIQRTLVDIYAQPNVHSELMAMRRASEFESGRFVLRLRPYLVRLLEKPVLEKYGFGGGKGG 450
            VA  +NTK    + PL++    ++  GS  ++VVEDLTL+P +E R ALC ALYKCTG FKR+VSPLLPYPLV+N+LHRDFVEA+EMSGGSA+E ++TFAMKMEEP TK FL DA+ +IRAEPKVY ++++++EWI+DFQ+QVDYVPGLSKGKRL+D EDA+Q+A FA +MK AGNKCFA++D+EMALTRY QGVELL  VECK+   Q+ L  L  +LLTNQAIAGL+T  WR ++TAC ACL INP+NLKARARRAEAY CLGD+E A  DL+ I+RLQ ++LL DHD DTAQ LL+ AQKDA+K+ + ++ M+ +ES  AKRM++GADFTA+R  EKP         S  S S SR  A +  S+A   ++ S K  +EKLIDEVVALEIQ++L+ IY+QP V  EL+ +R+A+++ESGRFV RLRPYL +LL +P+L++Y FG G+ G
Sbjct:    4 VAEKENTKPENVSTPLVALSSYSVNKGS--DEVVEDLTLRPSKEDRLALCEALYKCTGSFKRIVSPLLPYPLVINRLHRDFVEAQEMSGGSAKEALMTFAMKMEEPGTKAFLSDAQAQIRAEPKVYAQNMVDDEWISDFQSQVDYVPGLSKGKRLLDSEDAKQFATFADEMKSAGNKCFASQDYEMALTRYTQGVELLQQVECKDEQPQRHLLELYTALLTNQAIAGLKTSAWRTSLTACTACLSINPRNLKARARRAEAYTCLGDMEAAALDLEVILRLQATELLEDHDQDTAQELLAAAQKDARKLSQRIERMKREESATAKRMMAGADFTADRHKEKPPAPDIPQPPSILSSSTSRSRATDPLSAARPVSRLSAKPGSEKLIDEVVALEIQQSLMYIYSQPVVQGELIMLRKAADYESGRFVQRLRPYLAKLLAEPILDRYSFGKGEEG 453
The following BLAST results are available for this feature:
BLAST of NO25G00770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005854210.11.000e-14560.62peptidyl-prolyl cis-trans isomerase d-like protein... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00770NO25G00770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00770.1NO25G00770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00770.1.cds1NO25G00770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00770.1 ID=NO25G00770.1|Name=NO25G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
ACTCAACCTACACCTACAAAGAGTCATGGTGGCCAGGGACAAGAACACTA
AGACGATGCCCCTCTTGAGCAAGCAACCCAGCAACTTAGGATGCGGCAGC
AGCAAGGAAGACGTCGTGGAAGACCTCACCCTGCAACCCGACGAGGAGGC
CCGCCAAGCCCTGTGCGCCGCCTTGTACAAGTGCACGGGGCCCTTCAAGC
GCATGGTCTCACCTTTATTGCCTTACCCTTTGGTTCTCAATAAGCTGCAC
CGCGACTTCGTCGAAGCCGAGGAAATGAGTGGGGGCTCGGCGGAGGAATG
CATGCTCACTTTTGCCATGAAAATGGAAGAACCCGATACCAAGACATTCC
TCGAAGATGCCGAAAAACGCATCAGGGCTGAGCCTAAGGTGTACGGGGAG
CACTTGCTGGAGGAGGAGTGGATCAATGATTTCCAAGCACAGGTTGACTA
TGTCCCTGGGCTCAGTAAGGGCAAGCGCTTAATAGACGTTGAAGACGCGC
AGCAATATGCGGCTTTTGCCATGGATATGAAGGGGGCAGGGAACAAGTGT
TTTGCCACAAAGGATTTTGAGATGGCCTTGACGAGGTACCAGCAGGGAGT
GGAGTTGCTGCACAACGTCGAATGTAAAGAGGCTTCGGCCCAACAGGAGC
TAACAGCCCTCCTTGCCTCCCTCCTAACCAACCAAGCTATCGCGGGCTTA
CGAACCGGAAACTGGCGTGTGACAATTACGGCATGCGATGCCTGCTTAGA
TATTAACCCTCAGAATCTCAAGGCGCGTGCCCGACGAGCCGAGGCCTACA
AATGCTTGGGAGACATCGAAAAAGCCACCACGGACCTCGATTGGATTGTC
CGCCTACAATGCTCTGATCTCCTCGCCGACCACGACGTCGATACCGCCCA
AACACTTTTAAGCACCGCTCAAAAAGACGCCCAAAAAATGATGAAAGACC
TCCAAGGGATGCGCATTCAAGAAAGCGAGGTCGCCAAGCGCATGATCTCA
GGTGCGGACTTCACTGCTAATCGCGAAAACGAAAAGCCTTCCTTCCTCCA
TCCCTCCTCTTCTTCCTCCACCTCCTCCGGCAGCCCCTCGCGAATGCATG
CCCAGAATCAGTTTTCATCAGCTTTAGCCGAAGCAAAGAAGAGCACGAAG
ATCATCACCGAGAAACTGATTGATGAAGTGGTGGCGTTGGAGATCCAAAG
GACTTTGGTCGACATATACGCGCAACCCAACGTCCACTCGGAGTTGATGG
CCATGAGGAGGGCATCTGAATTCGAAAGCGGGCGATTCGTGCTGCGCTTG
AGGCCGTATCTGGTGAGACTGCTCGAGAAGCCCGTGTTGGAAAAATATGG
CTTTGGGGGGGGGAAGGGGGGTATCGGAAATTGGAGCGGGCGTTGGGGCA
GCATGTGACGACAAGCGAGGACGTGAGGGAGAACGCCAAGAGAATTTTGG
CCACCCTGATGGGGGATTTGTTCGAGGAATAGGGCGGTGGGTTCTTCTTT
CCCTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCATTCCCATTCCAA
TTCTGATGGGGGATTAGGGAGGGTAAGGATACAAGATGACGAATTGAGTA
TGTCACAATGGATAGGTCACGAAAAACGGAAGAAATAGGGAAACACAAAA
ACACAGCGAGTCGCGCAATAACCACATTGGGAGTTATACGCAAAATACGA
GGAAAGGAAAGAGATGATGGGGTCAAGGCAGCACAAAGTACGGACAAACG
AATAACAGAAGGACATGGAGAGGGGTATTCAGTAGTAGTAGGAAGGAAGA
AGCCAAACACAACAGTATACGCTTATGAAT
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protein sequence of NO25G00770.1

>NO25G00770.1-protein ID=NO25G00770.1-protein|Name=NO25G00770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MVARDKNTKTMPLLSKQPSNLGCGSSKEDVVEDLTLQPDEEARQALCAAL
YKCTGPFKRMVSPLLPYPLVLNKLHRDFVEAEEMSGGSAEECMLTFAMKM
EEPDTKTFLEDAEKRIRAEPKVYGEHLLEEEWINDFQAQVDYVPGLSKGK
RLIDVEDAQQYAAFAMDMKGAGNKCFATKDFEMALTRYQQGVELLHNVEC
KEASAQQELTALLASLLTNQAIAGLRTGNWRVTITACDACLDINPQNLKA
RARRAEAYKCLGDIEKATTDLDWIVRLQCSDLLADHDVDTAQTLLSTAQK
DAQKMMKDLQGMRIQESEVAKRMISGADFTANRENEKPSFLHPSSSSSTS
SGSPSRMHAQNQFSSALAEAKKSTKIITEKLIDEVVALEIQRTLVDIYAQ
PNVHSELMAMRRASEFESGRFVLRLRPYLVRLLEKPVLEKYGFGGGKGGI
GNWSGRWGSM*
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mRNA from alignment at chr25:211717..213546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00770.1 ID=NO25G00770.1|Name=NO25G00770.1|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp|location=Sequence derived from alignment at chr25:211717..213546+ (Nannochloropsis oceanica)
ACTCAACCTACACCTACAAAGAGTCATGGTGGCCAGGGACAAGAACACTA
AGACGATGCCCCTCTTGAGCAAGCAACCCAGCAACTTAGGATGCGGCAGC
AGCAAGGAAGACGTCGTGGAAGACCTCACCCTGCAACCCGACGAGGAGGC
CCGCCAAGCCCTGTGCGCCGCCTTGTACAAGTGCACGGGGCCCTTCAAGC
GCATGGTCTCACCTTTATTGCCTTACCCTTTGGTTCTCAATAAGCTGCAC
CGCGACTTCGTCGAAGCCGAGGAAATGAGTGGGGGCTCGGCGGAGGAATG
CATGCTCACTTTTGCCATGAAAATGGAAGAACCCGATACCAAGACATTCC
TCGAAGATGCCGAAAAACGCATCAGGGCTGAGCCTAAGGTGTACGGGGAG
CACTTGCTGGAGGAGGAGTGGATCAATGATTTCCAAGCACAGGTTGACTA
TGTCCCTGGGCTCAGTAAGGGCAAGCGCTTAATAGACGTTGAAGACGCGC
AGCAATATGCGGCTTTTGCCATGGATATGAAGGGGGCAGGGAACAAGTGT
TTTGCCACAAAGGATTTTGAGATGGCCTTGACGAGGTACCAGCAGGGAGT
GGAGTTGCTGCACAACGTCGAATGTAAAGAGGCTTCGGCCCAACAGGAGC
TAACAGCCCTCCTTGCCTCCCTCCTAACCAACCAAGCTATCGCGGGCTTA
CGAACCGGAAACTGGCGTGTGACAATTACGGCATGCGATGCCTGCTTAGA
TATTAACCCTCAGAATCTCAAGGCGCGTGCCCGACGAGCCGAGGCCTACA
AATGCTTGGGAGACATCGAAAAAGCCACCACGGACCTCGATTGGATTGTC
CGCCTACAATGCTCTGATCTCCTCGCCGACCACGACGTCGATACCGCCCA
AACACTTTTAAGCACCGCTCAAAAAGACGCCCAAAAAATGATGAAAGACC
TCCAAGGGATGCGCATTCAAGAAAGCGAGGTCGCCAAGCGCATGATCTCA
GGTGCGGACTTCACTGCTAATCGCGAAAACGAAAAGCCTTCCTTCCTCCA
TCCCTCCTCTTCTTCCTCCACCTCCTCCGGCAGCCCCTCGCGAATGCATG
CCCAGAATCAGTTTTCATCAGCTTTAGCCGAAGCAAAGAAGAGCACGAAG
ATCATCACCGAGAAACTGATTGATGAAGTGGTGGCGTTGGAGATCCAAAG
GACTTTGGTCGACATATACGCGCAACCCAACGTCCACTCGGAGTTGATGG
CCATGAGGAGGGCATCTGAATTCGAAAGCGGGCGATTCGTGCTGCGCTTG
AGGCCGTATCTGGTGAGACTGCTCGAGAAGCCCGTGTTGGAAAAATATGG
CTTTGGGGGGGGGAAGGGGGGTATCGGAAATTGGAGCGGGCGTTGGGGCA
GCATGTGACGACAAGCGAGGACGTGAGGGAGAACGCCAAGAGAATTTTGG
CCACCCTGATGGGGGATTTGTTCGAGGAATAGGGCGGTGGGTTCTTCTTT
CCCTCACTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCATTCCCATTCCAA
TTCTGATGGGGGATTAGGGAGGGTAAGGATACAAGATGACGAATTGAGTA
TGTCACAATGGATAGGTCACGAAAAACGGAAGAAATAGGGAAACACAAAA
ACACAGCGAGTCGCGCAATAACCACATTGGGAGTTATACGCAAAATACGA
GGAAAGGAAAGAGATGATGGGGTCAAGGCAGCACAAAGTACGGACAAACG
AATAACAGAAGGACATGGAGAGGGGTATTCAGTAGTAGTAGGAAGGAAGA
AGCCAAACACAACAGTATACGCTTATGAAT
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Coding sequence (CDS) from alignment at chr25:211717..213546+

>NO25G00770.1 ID=NO25G00770.1|Name=NO25G00770.1|organism=Nannochloropsis oceanica|type=CDS|length=1383bp|location=Sequence derived from alignment at chr25:211717..213546+ (Nannochloropsis oceanica)
ATGGTGGCCAGGGACAAGAACACTAAGACGATGCCCCTCTTGAGCAAGCA
ACCCAGCAACTTAGGATGCGGCAGCAGCAAGGAAGACGTCGTGGAAGACC
TCACCCTGCAACCCGACGAGGAGGCCCGCCAAGCCCTGTGCGCCGCCTTG
TACAAGTGCACGGGGCCCTTCAAGCGCATGGTCTCACCTTTATTGCCTTA
CCCTTTGGTTCTCAATAAGCTGCACCGCGACTTCGTCGAAGCCGAGGAAA
TGAGTGGGGGCTCGGCGGAGGAATGCATGCTCACTTTTGCCATGAAAATG
GAAGAACCCGATACCAAGACATTCCTCGAAGATGCCGAAAAACGCATCAG
GGCTGAGCCTAAGGTGTACGGGGAGCACTTGCTGGAGGAGGAGTGGATCA
ATGATTTCCAAGCACAGGTTGACTATGTCCCTGGGCTCAGTAAGGGCAAG
CGCTTAATAGACGTTGAAGACGCGCAGCAATATGCGGCTTTTGCCATGGA
TATGAAGGGGGCAGGGAACAAGTGTTTTGCCACAAAGGATTTTGAGATGG
CCTTGACGAGGTACCAGCAGGGAGTGGAGTTGCTGCACAACGTCGAATGT
AAAGAGGCTTCGGCCCAACAGGAGCTAACAGCCCTCCTTGCCTCCCTCCT
AACCAACCAAGCTATCGCGGGCTTACGAACCGGAAACTGGCGTGTGACAA
TTACGGCATGCGATGCCTGCTTAGATATTAACCCTCAGAATCTCAAGGCG
CGTGCCCGACGAGCCGAGGCCTACAAATGCTTGGGAGACATCGAAAAAGC
CACCACGGACCTCGATTGGATTGTCCGCCTACAATGCTCTGATCTCCTCG
CCGACCACGACGTCGATACCGCCCAAACACTTTTAAGCACCGCTCAAAAA
GACGCCCAAAAAATGATGAAAGACCTCCAAGGGATGCGCATTCAAGAAAG
CGAGGTCGCCAAGCGCATGATCTCAGGTGCGGACTTCACTGCTAATCGCG
AAAACGAAAAGCCTTCCTTCCTCCATCCCTCCTCTTCTTCCTCCACCTCC
TCCGGCAGCCCCTCGCGAATGCATGCCCAGAATCAGTTTTCATCAGCTTT
AGCCGAAGCAAAGAAGAGCACGAAGATCATCACCGAGAAACTGATTGATG
AAGTGGTGGCGTTGGAGATCCAAAGGACTTTGGTCGACATATACGCGCAA
CCCAACGTCCACTCGGAGTTGATGGCCATGAGGAGGGCATCTGAATTCGA
AAGCGGGCGATTCGTGCTGCGCTTGAGGCCGTATCTGGTGAGACTGCTCG
AGAAGCCCGTGTTGGAAAAATATGGCTTTGGGGGGGGGAAGGGGGGTATC
GGAAATTGGAGCGGGCGTTGGGGCAGCATGTGA
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Synonyms
Publications