NO25G00420.1, NO25G00420.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO25G00420.1
Unique NameNO25G00420.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length849
Alignment locationchr25:123336..124184 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr25genomechr25:123336..124184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO25G00420.1 vs.
Match: XP_005852599.1 (hypothetical protein NGA_0711800 [Nannochloropsis gaditana CCMP526]; EKU23230.1 hypothetical protein NGA_0711800 [Nannochloropsis gaditana CCMP526]; EWM21559.1 hypothetical protein Naga_100559g3 [Nannochloropsis gaditana])

HSP 1 Score: 147.9 bits (372), Expect = 3.900e-32
Identity = 88/209 (42.11%), Postives = 132/209 (63.16%), Query Frame = 0 
Query:   31 ALFATPICRRCSSHRCFSSATASS-------PSLSSHTDTNTNAFAGLSRQDLKAYHALVRSAQVSVALQRGYQDGTCAATVEGSKELYKLLRDTRTRPSFLTPFASTLGIVLHYLPVPPGAGIGNVRQGLISSLQESYDCSVRQLIEIERAGKSK--APAAAVKRFIKSKRDSLGVEDDEGGTGASSGIVTQAIQLFSRILIRGATRV 231
            +L A     R    R F++ T SS       PS    ++    AF G SR+ L+ YHALVR A+V+ AL+ GYQDGTCA+ ++  +EL  LLR TR RPS LTP  S++GI+L +LP+P    +G+V  GL +SL+E+ D +VR+L+E+ERA  S+    A+A+KRF+K KRD LG++ ++ G+   +G++ Q  ++    L+ GA R+
Sbjct:    6 SLLAKASVHRPFGLRRFATETLSSFPSESTLPSSQQASEATQAAFTGQSRKQLQEYHALVRIAEVAEALRSGYQDGTCASPID--EELRSLLRATRARPSLLTPLGSSVGILLRHLPIPSNTIVGDVGIGLRASLKEALDSNVRRLVEVERARGSRGGTSASALKRFMKEKRDGLGMDGEDAGSEDGAGVLAQGTKVVCSALLWGAKRL 212
The following BLAST results are available for this feature:
BLAST of NO25G00420.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852599.13.900e-3242.11hypothetical protein NGA_0711800 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO25G00420NO25G00420Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO25G00420.1NO25G00420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO25G00420.1.cds1NO25G00420.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO25G00420.1 ID=NO25G00420.1|Name=NO25G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp
TGTACAGGGATGTAAGATCCGCTAAACGCATGCTATGATACATGTACGTA
GTTCACCATATGTCCAAACCACACATATAGCCCCTGCCTCACAACCCAGG
GAGCCGACGAAGAATTGACATGCAACGGTTTTTGTGCTTACCGCGCGCTC
ACACTCCCCACAATCTCAGGACAGTCAAGGCAAGGGATCGCGCCATGCTG
TTCATCCGCGCCCTCTTTGCCACGCCAATTTGCCGCCGCTGCTCCTCTCA
CCGCTGCTTTTCAAGCGCCACGGCATCTTCGCCCTCATTATCTTCCCACA
CCGACACCAACACAAATGCCTTTGCCGGCCTGTCCCGCCAAGATCTGAAG
GCATATCATGCGCTGGTACGGAGTGCTCAGGTTTCCGTTGCTTTGCAACG
GGGGTACCAAGATGGGACCTGTGCGGCGACTGTAGAAGGTAGTAAGGAAC
TCTACAAACTCTTGCGAGACACCCGGACGCGGCCTTCATTCCTCACCCCT
TTTGCAAGCACTCTGGGCATCGTCCTGCACTATTTGCCTGTTCCGCCTGG
CGCGGGCATTGGGAATGTGAGACAGGGTTTGATCTCATCCCTGCAAGAGT
CTTATGATTGCAGCGTCAGGCAATTGATAGAGATAGAACGTGCAGGAAAA
TCGAAAGCTCCGGCGGCCGCAGTGAAGCGCTTTATAAAGTCGAAACGAGA
TAGTCTTGGCGTGGAGGATGATGAGGGGGGGACAGGTGCAAGTAGCGGGA
TTGTGACACAAGCAATCCAATTATTCTCCCGAATATTAATCAGAGGGGCG
ACTCGTGTGTAGATCGACTGGAAAACAGCGGAAAATTAACAAGAATGGA
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protein sequence of NO25G00420.1

>NO25G00420.1-protein ID=NO25G00420.1-protein|Name=NO25G00420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MQRFLCLPRAHTPHNLRTVKARDRAMLFIRALFATPICRRCSSHRCFSSA
TASSPSLSSHTDTNTNAFAGLSRQDLKAYHALVRSAQVSVALQRGYQDGT
CAATVEGSKELYKLLRDTRTRPSFLTPFASTLGIVLHYLPVPPGAGIGNV
RQGLISSLQESYDCSVRQLIEIERAGKSKAPAAAVKRFIKSKRDSLGVED
DEGGTGASSGIVTQAIQLFSRILIRGATRV*
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mRNA from alignment at chr25:123336..124184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO25G00420.1 ID=NO25G00420.1|Name=NO25G00420.1|organism=Nannochloropsis oceanica|type=mRNA|length=849bp|location=Sequence derived from alignment at chr25:123336..124184- (Nannochloropsis oceanica)
TGTACAGGGATGTAAGATCCGCTAAACGCATGCTATGATACATGTACGTA
GTTCACCATATGTCCAAACCACACATATAGCCCCTGCCTCACAACCCAGG
GAGCCGACGAAGAATTGACATGCAACGGTTTTTGTGCTTACCGCGCGCTC
ACACTCCCCACAATCTCAGGACAGTCAAGGCAAGGGATCGCGCCATGCTG
TTCATCCGCGCCCTCTTTGCCACGCCAATTTGCCGCCGCTGCTCCTCTCA
CCGCTGCTTTTCAAGCGCCACGGCATCTTCGCCCTCATTATCTTCCCACA
CCGACACCAACACAAATGCCTTTGCCGGCCTGTCCCGCCAAGATCTGAAG
GCATATCATGCGCTGGTACGGAGTGCTCAGGTTTCCGTTGCTTTGCAACG
GGGGTACCAAGATGGGACCTGTGCGGCGACTGTAGAAGGTAGTAAGGAAC
TCTACAAACTCTTGCGAGACACCCGGACGCGGCCTTCATTCCTCACCCCT
TTTGCAAGCACTCTGGGCATCGTCCTGCACTATTTGCCTGTTCCGCCTGG
CGCGGGCATTGGGAATGTGAGACAGGGTTTGATCTCATCCCTGCAAGAGT
CTTATGATTGCAGCGTCAGGCAATTGATAGAGATAGAACGTGCAGGAAAA
TCGAAAGCTCCGGCGGCCGCAGTGAAGCGCTTTATAAAGTCGAAACGAGA
TAGTCTTGGCGTGGAGGATGATGAGGGGGGGACAGGTGCAAGTAGCGGGA
TTGTGACACAAGCAATCCAATTATTCTCCCGAATATTAATCAGAGGGGCG
ACTCGTGTGTAGATCGACTGGAAAACAGCGGAAAATTAACAAGAATGGA
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Coding sequence (CDS) from alignment at chr25:123336..124184-

>NO25G00420.1 ID=NO25G00420.1|Name=NO25G00420.1|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at chr25:123336..124184- (Nannochloropsis oceanica)
ATGCAACGGTTTTTGTGCTTACCGCGCGCTCACACTCCCCACAATCTCAG
GACAGTCAAGGCAAGGGATCGCGCCATGCTGTTCATCCGCGCCCTCTTTG
CCACGCCAATTTGCCGCCGCTGCTCCTCTCACCGCTGCTTTTCAAGCGCC
ACGGCATCTTCGCCCTCATTATCTTCCCACACCGACACCAACACAAATGC
CTTTGCCGGCCTGTCCCGCCAAGATCTGAAGGCATATCATGCGCTGGTAC
GGAGTGCTCAGGTTTCCGTTGCTTTGCAACGGGGGTACCAAGATGGGACC
TGTGCGGCGACTGTAGAAGGTAGTAAGGAACTCTACAAACTCTTGCGAGA
CACCCGGACGCGGCCTTCATTCCTCACCCCTTTTGCAAGCACTCTGGGCA
TCGTCCTGCACTATTTGCCTGTTCCGCCTGGCGCGGGCATTGGGAATGTG
AGACAGGGTTTGATCTCATCCCTGCAAGAGTCTTATGATTGCAGCGTCAG
GCAATTGATAGAGATAGAACGTGCAGGAAAATCGAAAGCTCCGGCGGCCG
CAGTGAAGCGCTTTATAAAGTCGAAACGAGATAGTCTTGGCGTGGAGGAT
GATGAGGGGGGGACAGGTGCAAGTAGCGGGATTGTGACACAAGCAATCCA
ATTATTCTCCCGAATATTAATCAGAGGGGCGACTCGTGTGTAG
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Synonyms
Publications