NO24G01320.2, NO24G01320.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO24G01320.2
Unique NameNO24G01320.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2779
Alignment locationchr24:359492..362401 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr24genomechr24:359492..362401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO24G01320.2 vs.
Match: XP_005855585.1 (hypothetical protein NGA_0623900 [Nannochloropsis gaditana CCMP526]; EKU20777.1 hypothetical protein NGA_0623900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 309.3 bits (791), Expect = 2.000e-80
Identity = 250/418 (59.81%), Postives = 295/418 (70.57%), Query Frame = 0 
Query:    1 MKTVTELQKERAEKEKGEKEERKRKREEEEEEEEGGEEEEEEDSENDED--MEESDDDDKGEEDGMEVEDDAGEEEEEAAAEAEEEAEE--EGGAASAATGPAGDAEDVSEGGRKGRGKNGGQQQKKQQPPL--GPLSLVGTTPRAKSIEELRERLRIKIEVARAKRGGVSEGGNRRSAKDSKAAAAAAAAAAAAAANAQNRRKKMQHVPSSSFSPSTSFPPSSPAAAAAVAAATATAAAPKQEMDLQFSKITVPTSFASGALPKKGGKNLVGLLKKAEEKERRLKELQAGEGGEGGKEERNAILWKDALKSAHGGKVLDNPKLLKKAIKSKEKAKAKSKEKWGDRTAKLSAAEREKQGKREANLKKRKLGGVEGCAAGQNMDKDKGKDEKSGGGRRRAGFEGKRADFLNKGGKKGRD 413
            MKTVTELQ ERA KEK EKE  KR RE+  E  EG  E+ E++++ D D  +EES+++ + EE+  E +DDAG+++ E      +EA +  +GG           AE++  GG      N  + ++  Q     GPLSLVGTTPRAKSIEELRERLR+KIE ARAKRGGVSEGGNRRSAK+S+AAAAAA          QN+RKK Q     S SP+TS      AAA AV  ++ ++      +D+QF KI VPT  AS  L KKGGKNLVGLLKKAEEKE+RLKELQA EGG   KEE +A+LWKDALKSAHG K+LDNPKLLKKAIK KEKAKAKSKEKWGDRTAK+ AAEREKQG+REANLKKRKLGGVEGC AG   +KD    EKSGG + RAGFEGKRA+FLNKG  K R+
Sbjct:   77 MKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARDTSKGGGIEEEK-----AEEIGGGGLHIAANNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLRLKIEEARAKRGGVSEGGNRRSAKNSRAAAAAANLN-------QNKRKKGQLASLPSSSPTTS----PAAAAVAVGLSSGSSHQNDASVDIQFGKIAVPTPVASRNL-KKGGKNLVGLLKKAEEKEKRLKELQATEGG---KEEASALLWKDALKSAHGEKILDNPKLLKKAIKKKEKAKAKSKEKWGDRTAKIEAAEREKQGRREANLKKRKLGGVEGCLAGSKAEKD--NKEKSGGRQGRAGFEGKRAEFLNKGAGKKRN 472
The following BLAST results are available for this feature:
BLAST of NO24G01320.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855585.12.000e-8059.81hypothetical protein NGA_0623900 [Nannochloropsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO24G01320NO24G01320Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO24G01320.2NO24G01320.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO24G01320.2.cds1NO24G01320.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO24G01320.2.cds2NO24G01320.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO24G01320.2 ID=NO24G01320.2|Name=NO24G01320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2779bp
CTGTGTCCTCACCCTTCCTGTGCTAAGATGGTACGTTGTGAAAAGAAGGG
TGATATTGTCTCATTTTAGGTTTAAATAAATGCCAGCGTCTTGCACTCAA
GCTCAAAAGGGTTGTCAGAGTAGGGATGGTTGCAACGCGCAAAGGGTCTG
GTGTCACGAAAGGGCCGCTCCCAAAAGTTGGGTTGCTGCGTGGGTTGGAG
TTGGAGTTGGAGCTGAAGAAAACGCCGGACAGCGGCCTCATGCACCGTCA
CACCCTCCATTGATAGACGAAAGGCCTGTCTTCGTTCGGGTTGAGTGGGT
TGAGATCGTTCGGGTCGGACCAGAAGTTAAAGCGACAACGGGAATGAGGG
CAAGACAGCGATTCGGCCAGCCAGCGTTGGGCCCGCTAAACAGCGTGAAC
GGCTTGCCGCGGACCATGCTTGCCCTCCATTTCATATGGGCGTCTCTTTT
TTGTCTCTCCACACTTTCACCCACGATCTGCCACAAATACGAGAATGACA
AACTAATCATTGGCTGCACAGGCGTGTGCAGCGGTTTGGCCAGACTTCGT
GTCCGTAGAAACACATCACAAAAGTGTATCTACCGTTCAGCCTCCCCACC
CTCCTTCTAACCCACGACGCACCATCTATCCTACCTAACGCTTCCCACCA
ATAGCACATACACACGGCTACCTTTTTCCATTCCGTAGAGCGCAATTTGG
GGAAGCATGGCGGTGCAAGACGAGGCCGTGCTAAGACGACGGCTGGCGGA
GAAGGATGCTTTCTTTTGCCGCATGGTCAATTTGGTGCCGGCCGACCTGT
ATTTGCCCAAGGACGATAACAGTGCAGCGGATGCGAATGCCAAATATTTT
AAGGTTCGTACTATGTGTATTTAAAAAGATATATGAATAGAGTAATCGAA
GAGGTTGATTTGGAGAATTTAGCGGGGAGGGTGGGATGAAGACTTAGGTA
GACAGCAGGATAGCGGAGAGGGTGGCGGCGGCGGATAAGAAGCGCAGCTA
CGCTCGCGCTCTTTGTTTCATGAGGACAATACCTATGCACTTTGAAATAA
GTAGTCGCTTACACACGCTGTAGACGTGGAGGCGACATCCTCTCACGCTC
ATTTTGCGTCGCATCGCTCATCCTCCCTCCCTCTGAAATACAGAACAAAC
GTCTAGCCGCGCCCAAGCAAGTCAAGAAGGAAGAGTCCAAGCGCGGTAAG
AAAATTAAATTTGACCCGGCCAATATGAAGACTGTCACAGAGCTTCAGAA
AGAGAGAGCGGAGAAGGAGAAGGGCGAGAAGGAGGAGAGGAAGAGGAAGC
GGGAGGAAGAGGAGGAGGAGGAGGAAGGAGGAGAGGAGGAGGAGGAGGAG
GATAGTGAAAATGACGAAGACATGGAGGAGAGCGATGATGATGATAAGGG
AGAGGAGGATGGGATGGAGGTCGAAGACGATGCGGGGGAGGAGGAGGAGG
AGGCGGCGGCGGAGGCGGAGGAGGAAGCGGAGGAGGAGGGAGGGGCAGCA
AGTGCTGCGACAGGGCCAGCAGGAGATGCGGAAGACGTTTCAGAAGGAGG
AAGAAAAGGGAGAGGAAAAAATGGAGGGCAGCAGCAGAAGAAGCAGCAGC
CTCCACTAGGACCTCTGTCGCTGGTGGGAACGACGCCGCGGGCGAAGTCA
ATCGAAGAGTTGAGGGAGCGACTACGGATTAAAATTGAGGTGGCACGAGC
TAAGCGTGGAGGAGTCAGTGAAGGCGGCAACCGCCGCAGTGCCAAGGATA
GCAAAGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCAAC
GCACAAAACAGGCGGAAGAAGATGCAACATGTCCCCTCTTCCTCCTTCTC
TCCTTCTACTTCTTTCCCTCCTTCTTCCCCTGCCGCTGCGGCAGCCGTTG
CGGCTGCCACTGCTACTGCTGCTGCTCCCAAGCAGGAGATGGACCTTCAG
TTTAGTAAGATTACCGTCCCAACTTCTTTTGCTTCGGGGGCGCTGCCGAA
GAAGGGAGGGAAGAATTTGGTAGGTCTTCTGAAGAAGGCAGAGGAGAAGG
AGAGGAGGTTGAAGGAGCTCCAGGCCGGGGAAGGAGGGGAAGGAGGAAAG
GAGGAACGGAACGCGATTTTGTGGAAGGATGCCTTGAAGAGTGCGCATGG
TGGGAAGGTTCTGGATAACCCCAAGTTACTCAAAAAGGCGATCAAGTCGA
AGGAGAAGGCCAAGGCGAAGAGCAAAGAAAAGTGGGGCGATCGTACTGCC
AAGCTCTCGGCGGCAGAGAGGGAGAAGCAAGGAAAACGGGAGGCGAACTT
GAAGAAGAGGAAGTTGGGGGGAGTGGAAGGATGTGCGGCGGGTCAGAATA
TGGATAAAGATAAGGGGAAGGATGAGAAGTCAGGAGGGGGGAGGCGCCGC
GCCGGCTTTGAAGGGAAGAGGGCGGATTTTTTGAACAAGGGAGGTAAGAA
GGGAAGGGATGGAGAGGAGGGGGGGAGAAGGGTGCAGGAAGCGGAGGGGG
AGGCAAAGGCGGAGGGGGAGGAAGTGGTCAGGTCACGGGAAAAGCGGGGG
GATGGGAGGTGGAGGGGGAGGGGTAGGAGGAGGACATAGTTAGATGGCAC
TGGGGATGGGTGCGGAGGATGGTTGGGCGTAAGAGAGAGAGAAAAAGCGA
AAAGTAGAAGTCTTTCGAACGTGCGTGTTTAAAGGTTGGGAGTATTTCTT
TGTTGCGAGGTTGATGGTGATGATTTGGGAGCCAGGAGCAGAGAAAGACA
AAAAGAAACAAAACGAAACGAGTGAAATT
back to top

protein sequence of NO24G01320.2

>NO24G01320.2-protein ID=NO24G01320.2-protein|Name=NO24G01320.2|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MKTVTELQKERAEKEKGEKEERKRKREEEEEEEEGGEEEEEEDSENDEDM
EESDDDDKGEEDGMEVEDDAGEEEEEAAAEAEEEAEEEGGAASAATGPAG
DAEDVSEGGRKGRGKNGGQQQKKQQPPLGPLSLVGTTPRAKSIEELRERL
RIKIEVARAKRGGVSEGGNRRSAKDSKAAAAAAAAAAAAAANAQNRRKKM
QHVPSSSFSPSTSFPPSSPAAAAAVAAATATAAAPKQEMDLQFSKITVPT
SFASGALPKKGGKNLVGLLKKAEEKERRLKELQAGEGGEGGKEERNAILW
KDALKSAHGGKVLDNPKLLKKAIKSKEKAKAKSKEKWGDRTAKLSAAERE
KQGKREANLKKRKLGGVEGCAAGQNMDKDKGKDEKSGGGRRRAGFEGKRA
DFLNKGGKKGRDGEEGGRRVQEAEGEAKAEGEEVVRSREKRGDGRWRGRG
RRRT*
back to top

mRNA from alignment at chr24:359492..362401-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO24G01320.2 ID=NO24G01320.2|Name=NO24G01320.2|organism=Nannochloropsis oceanica|type=mRNA|length=2910bp|location=Sequence derived from alignment at chr24:359492..362401- (Nannochloropsis oceanica)
CTGTGTCCTCACCCTTCCTGTGCTAAGATGGTACGTTGTGAAAAGAAGGG
TGATATTGTCTCATTTTAGGTTTAAATAAATGCCAGCGTCTTGCACTCAA
GCTCAAAAGGGTTGTCAGAGTAGGGATGGTTGCAACGCGCAAAGGGTCTG
GTGTCACGAAAGGGCCGCTCCCAAAAGTTGGGTTGCTGCGTGGGTTGGAG
TTGGAGTTGGAGCTGAAGAAAACGCCGGACAGCGGCCTCATGCACCGTCA
CACCCTCCATTGATAGACGAAAGGCCTGTCTTCGTTCGGGTTGAGTGGGT
TGAGATCGTTCGGGTCGGACCAGAAGTTAAAGCGACAACGGGAATGAGGG
CAAGACAGCGATTCGGCCAGCCAGCGTTGGGCCCGCTAAACAGCGTGAAC
GGCTTGCCGCGGACCATGCTTGCCCTCCATTTCATATGGGCGTCTCTTTT
TTGTCTCTCCACACTTTCACCCACGATCTGCCACAAATACGAGAATGACA
AACTAATCATTGGCTGCACAGGCGTGTGCAGCGGTTTGGCCAGACTTCGT
GTCCGTAGAAACACATCACAAAAGTGTATCTACCGTTCAGCCTCCCCACC
CTCCTTCTAACCCACGACGCACCATCTATCCTACCTAACGCTTCCCACCA
ATAGCACATACACACGGCTACCTTTTTCCATTCCGTAGAGCGCAATTTGG
GGAAGCATGGCGGTGCAAGACGAGGCCGTGCTAAGACGACGGCTGGCGGA
GAAGGATGCTTTCTTTTGCCGCATGGTCAATTTGGTGCCGGCCGACCTGT
ATTTGCCCAAGGACGATAACAGTGCAGCGGATGCGAATGCCAAATATTTT
AAGGTTCGTACTATGTGTATTTAAAAAGATATATGAATAGAGTAATCGAA
GAGGTTGATTTGGAGAATTTAGCGGGGAGGGTGGGATGAAGACTTAGGTA
GACAGCAGGATAGCGGAGAGGGTGGCGGCGGCGGATAAGAAGCGCAGCTA
CGCTCGCGCTCTTTGTTTCATGAGGACAATACCTATGCACTTTGAAATAA
GTAGTCGCTTACACACGCTGTAGACGTGGAGGCGACATCCTCTCACGCTC
ATTTTGCGTCGCATCGCTCATCCTCCCTCCCTCTGAAATACAGAACAAAC
GTCTAGCCGCGCCCAAGCAAGTCAAGAAGGAAGAGTCCAAGCGCGGTAAG
AAAATTAAATTTGACCCGGCCAATATGAAGACTGTCACAGAGCTTCAGAA
AGAGAGAGCGGAGAAGGAGAAGGGCGAGAAGGAGGAGAGGAAGAGGAAGC
GGGAGGAAGAGGAGGAGGAGGAGGAAGGAGGAGAGGAGGAGGAGGAGGAG
GATAGTGAAAATGACGAAGACATGGAGGAGAGCGATGATGATGATAAGGG
AGAGGAGGATGGGATGGAGGTCGAAGACGATGCGGGGGAGGAGGAGGAGG
AGGCGGCGGCGGAGGCGGAGGAGGAAGCGGAGGAGGAGGGAGGGGCAGCA
AGTGCTGCGACAGGGCCAGCAGGAGATGCGGAAGACGTTTCAGAAGGAGG
AAGAAAAGGGAGAGGAAAAAATGGAGGGCAGCAGCAGAAGAAGCAGCAGC
CTCCACTAGGACCTCTGTCGCTGGTGGGAACGACGCCGCGGGCGAAGTCA
ATCGAAGAGTTGAGGGAGCGACTACGGGTAGGTGTGGAGGGAAGAAGGAG
AGAGGATCGAACCATACGTCGAGCTATAAGCTATAGCCACATGAGATTGC
GCTAACATGCATACCTTTTTCCCCTCTTTCATACCATCCTTCTTCGTGAC
CAACACAGATTAAAATTGAGGTGGCACGAGCTAAGCGTGGAGGAGTCAGT
GAAGGCGGCAACCGCCGCAGTGCCAAGGATAGCAAAGCTGCCGCCGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCCAACGCACAAAACAGGCGGAAGA
AGATGCAACATGTCCCCTCTTCCTCCTTCTCTCCTTCTACTTCTTTCCCT
CCTTCTTCCCCTGCCGCTGCGGCAGCCGTTGCGGCTGCCACTGCTACTGC
TGCTGCTCCCAAGCAGGAGATGGACCTTCAGTTTAGTAAGATTACCGTCC
CAACTTCTTTTGCTTCGGGGGCGCTGCCGAAGAAGGGAGGGAAGAATTTG
GTAGGTCTTCTGAAGAAGGCAGAGGAGAAGGAGAGGAGGTTGAAGGAGCT
CCAGGCCGGGGAAGGAGGGGAAGGAGGAAAGGAGGAACGGAACGCGATTT
TGTGGAAGGATGCCTTGAAGAGTGCGCATGGTGGGAAGGTTCTGGATAAC
CCCAAGTTACTCAAAAAGGCGATCAAGTCGAAGGAGAAGGCCAAGGCGAA
GAGCAAAGAAAAGTGGGGCGATCGTACTGCCAAGCTCTCGGCGGCAGAGA
GGGAGAAGCAAGGAAAACGGGAGGCGAACTTGAAGAAGAGGAAGTTGGGG
GGAGTGGAAGGATGTGCGGCGGGTCAGAATATGGATAAAGATAAGGGGAA
GGATGAGAAGTCAGGAGGGGGGAGGCGCCGCGCCGGCTTTGAAGGGAAGA
GGGCGGATTTTTTGAACAAGGGAGGTAAGAAGGGAAGGGATGGAGAGGAG
GGGGGGAGAAGGGTGCAGGAAGCGGAGGGGGAGGCAAAGGCGGAGGGGGA
GGAAGTGGTCAGGTCACGGGAAAAGCGGGGGGATGGGAGGTGGAGGGGGA
GGGGTAGGAGGAGGACATAGTTAGATGGCACTGGGGATGGGTGCGGAGGA
TGGTTGGGCGTAAGAGAGAGAGAAAAAGCGAAAAGTAGAAGTCTTTCGAA
CGTGCGTGTTTAAAGGTTGGGAGTATTTCTTTGTTGCGAGGTTGATGGTG
ATGATTTGGGAGCCAGGAGCAGAGAAAGACAAAAAGAAACAAAACGAAAC
GAGTGAAATT
back to top

Coding sequence (CDS) from alignment at chr24:359492..362401-

>NO24G01320.2 ID=NO24G01320.2|Name=NO24G01320.2|organism=Nannochloropsis oceanica|type=CDS|length=1365bp|location=Sequence derived from alignment at chr24:359492..362401- (Nannochloropsis oceanica)
ATGAAGACTGTCACAGAGCTTCAGAAAGAGAGAGCGGAGAAGGAGAAGGG
CGAGAAGGAGGAGAGGAAGAGGAAGCGGGAGGAAGAGGAGGAGGAGGAGG
AAGGAGGAGAGGAGGAGGAGGAGGAGGATAGTGAAAATGACGAAGACATG
GAGGAGAGCGATGATGATGATAAGGGAGAGGAGGATGGGATGGAGGTCGA
AGACGATGCGGGGGAGGAGGAGGAGGAGGCGGCGGCGGAGGCGGAGGAGG
AAGCGGAGGAGGAGGGAGGGGCAGCAAGTGCTGCGACAGGGCCAGCAGGA
GATGCGGAAGACGTTTCAGAAGGAGGAAGAAAAGGGAGAGGAAAAAATGG
AGGGCAGCAGCAGAAGAAGCAGCAGCCTCCACTAGGACCTCTGTCGCTGG
TGGGAACGACGCCGCGGGCGAAGTCAATCGAAGAGTTGAGGGAGCGACTA
CGGATTAAAATTGAGGTGGCACGAGCTAAGCGTGGAGGAGTCAGTGAAGG
CGGCAACCGCCGCAGTGCCAAGGATAGCAAAGCTGCCGCCGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCCAACGCACAAAACAGGCGGAAGAAGATG
CAACATGTCCCCTCTTCCTCCTTCTCTCCTTCTACTTCTTTCCCTCCTTC
TTCCCCTGCCGCTGCGGCAGCCGTTGCGGCTGCCACTGCTACTGCTGCTG
CTCCCAAGCAGGAGATGGACCTTCAGTTTAGTAAGATTACCGTCCCAACT
TCTTTTGCTTCGGGGGCGCTGCCGAAGAAGGGAGGGAAGAATTTGGTAGG
TCTTCTGAAGAAGGCAGAGGAGAAGGAGAGGAGGTTGAAGGAGCTCCAGG
CCGGGGAAGGAGGGGAAGGAGGAAAGGAGGAACGGAACGCGATTTTGTGG
AAGGATGCCTTGAAGAGTGCGCATGGTGGGAAGGTTCTGGATAACCCCAA
GTTACTCAAAAAGGCGATCAAGTCGAAGGAGAAGGCCAAGGCGAAGAGCA
AAGAAAAGTGGGGCGATCGTACTGCCAAGCTCTCGGCGGCAGAGAGGGAG
AAGCAAGGAAAACGGGAGGCGAACTTGAAGAAGAGGAAGTTGGGGGGAGT
GGAAGGATGTGCGGCGGGTCAGAATATGGATAAAGATAAGGGGAAGGATG
AGAAGTCAGGAGGGGGGAGGCGCCGCGCCGGCTTTGAAGGGAAGAGGGCG
GATTTTTTGAACAAGGGAGGTAAGAAGGGAAGGGATGGAGAGGAGGGGGG
GAGAAGGGTGCAGGAAGCGGAGGGGGAGGCAAAGGCGGAGGGGGAGGAAG
TGGTCAGGTCACGGGAAAAGCGGGGGGATGGGAGGTGGAGGGGGAGGGGT
AGGAGGAGGACATAG
back to top
Synonyms
Publications