NO23G00400.1, NO23G00400.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO23G00400.1
Unique NameNO23G00400.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3242
Alignment locationchr23:178424..181962 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr23genomechr23:178424..181962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO23G00400.1 vs.
Match: EWM24596.1 (beta-lactamase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 554.3 bits (1427), Expect = 3.300e-154
Identity = 257/398 (64.57%), Postives = 314/398 (78.89%), Query Frame = 0
Query:   27 VTDLEDFGSVEVTNRCCGAMTCRVLAPDIFLEAKQGSGPSDTSTADSTVPTKNFTYVGRKIKNEDELRQVRRAVKACPFHALRLRRGSKGTTVMQGDVNDAYPLPIGPHGEVFLLGYYTPKNAGASCYLIVRPKGGNVLIDAPLPDASLLERIRNLGEVSYLVFTHKDHTAFHREWFQALPGVQRVIHVDDVVQERKHFFFPYTGEVEMKIAGSKSLSLDNEGDVLLIPIPGHTPGSLAILYRNHYLFTGDSLHYSRPRGHLVSSRLHCWSDWEQQQKSLKALEEYDWLHILPGHGDPKEFENLKEGKMSLRQGLGWMEEQPRGYTSMGRFIPWLQLKTNN--AGMLGKVPRWVRKGMEWVVAPVGAPGTRDRARVWEWMRYAFFAWLVLKLWLRVLA 423
            + DLEDFGSVEVT++CCGAMTCRVLAP+IF EAK GS  SDT    S+ P  NFTYVGRKI++E ELRQVRRAVKACPFHAL+LRRG KG TVM  D N AYP+ +   G V+LLG+Y+PKNAGA+CYLIVRP GGNVL+D P+P+ASL+ERI+ LG   YLVFTHKDHTAF +EW  A P +QRV+H  DVV+ RKHFFFPYTG+VE+K+AG K+  LD EGD++LIPIPGH+PGSLAIL++ HYLFTGDSL YSRPRGHLVSSRLHCWS WE+Q+ SL+AL+ Y W H+LPGHG+PK F   ++ + SL + + WM EQP G TSM  F+ WLQL+T++  +  +  +PRW RKG+E +VAP GAPG R+RAR  +W R A   W++LK+   VLA
Sbjct:   39 IADLEDFGSVEVTDKCCGAMTCRVLAPEIFHEAKLGSSFSDTH--GSSTPD-NFTYVGRKIRDETELRQVRRAVKACPFHALKLRRGGKGATVMDEDFNAAYPIQVDQSGAVYLLGHYSPKNAGATCYLIVRPNGGNVLVDCPVPNASLVERIKELGGAKYLVFTHKDHTAFTKEWKMAFPAIQRVLHAGDVVENRKHFFFPYTGDVEIKLAGGKAQPLDKEGDIVLIPIPGHSPGSLAILFQEHYLFTGDSLFYSRPRGHLVSSRLHCWSSWEEQRASLQALDSYQWAHVLPGHGEPKRFSGKEDAQASLARAIEWMGEQPGGSTSMASFVCWLQLRTHSGQSRFMRAIPRWARKGIERLVAPAGAPGARERARALKWARSAVMMWILLKVLPNVLA 433          
The following BLAST results are available for this feature:
BLAST of NO23G00400.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM24596.13.300e-15464.57beta-lactamase domain protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO23G00400NO23G00400Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO23G00400.1NO23G00400.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO23G00400.1.cds1NO23G00400.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO23G00400.1.cds2NO23G00400.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO23G00400.1 ID=NO23G00400.1|Name=NO23G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3242bp
AACCTCCTCCCCCTTCCCCACTTGCAATAGACCGCGTTCCATTTCCCCCC
TCATTCACACACAGAGCATCAAGATCACCACTAGAAGCCTATACTGGCAG
CGATATAAAACCCAAAGCGTCTTCGTCGCCCAACATCCCGACTCTCAGAC
CTGCATCACACCATGCACGAGGACCATCCACACTCATCGCTGCCGTCATC
GTTTAGTGGAGAATCACAAGCGTCAGCCTCCGGGCCTCCGGTGACAGACC
TTGAGGACTTCGGCTCCGTGGAGGTCACGAACCGATGCTGCGGAGCCATG
ACTTGCCGCGTCTTGGCCCCAGATATCTTCCTGGAAGCCAAGCAAGGCAG
CGGTCCGTCAGATACCTCAACGGCTGATAGCACCGTGCCTACTAAAAACT
TTACGTACGTTGGACGGAAGATCAAGAATGAGGACGAGCTGCGCCAGGTT
CGACGGGCCGTCAAAGCTTGTCCTTTTCATGCTCTGCGCTTGCGACGTGG
CTCAAAAGGCACGACAGTGATGCAAGGGGACGTGAATGATGCATACCCCT
TGCCAATAGGTCCGCACGGTGAGGTGTTTTTGCTTGGATACTACACCCCT
AAGAATGCGGGAGCTTCTTGTTACTTGATTGTCCGCCCGAAGGGCGGTAA
TGTCTTGATCGATGCCCCATTGCCGGATGCAAGCCTCCTGGAGCGAATCA
GAAACTTGGGGGAGGTAAGCTATCTGGTATTTACTCACAAGGACCACACG
GCGTTTCATCGTGAGTGGTTTCAGGCCTTGCCGGGCGTGCAGCGGGTCAT
ACATGTGGACGATGTGGTGCAGGAGAGGAAGCACTTTTTTTTCCCATACA
CTGGCGAAGTGGAGATGAAAATTGCGGGTAGCAAAAGTTTATCACTCGAT
AATGAAGGTGACGTTTTGCTAATCCCCATTCCAGGGCACACACCCGGTAG
CCTCGCGATTCTCTATCGCAACCACTACCTCTTTACGGGGGACTCCCTCC
ACTACTCCCGCCCACGTGGACACCTCGTCTCCTCACGCTTGCACTGCTGG
TCCGATTGGGAACAACAACAAAAGAGCCTGAAGGCCCTCGAGGAATATGA
TTGGTTACACATTCTGCCGGGGCATGGGGACCCGAAAGAATTTGAAAATT
TGAAAGAGGGGAAAATGTCGTTACGGCAAGGGTTGGGTTGGATGGAGGAG
CAGCCAAGAGGGTACACAAGCATGGGCCGTTTCATACCGTGGTTGCAACT
GAAGACAAATAATGCAGGGATGCTGGGAAAGGTACCGCGATGGGTACGCA
AGGGGATGGAGTGGGTGGTCGCTCCTGTGGGGGCCCCGGGAACGAGGGAC
AGGGCGAGGGTGTGGGAATGGATGAGGTACGCCTTTTTTGCATGGTTGGT
GCTGAAGCTGTGGCTGCGGGTGCTTGCGTGATGAGGGAGAATACGGGATC
GCCGGTGGATCCGGACACACCGGCGACGGTTGTCTGTCGCTTTTGCTGCT
TGTTTTATCCCCGTGTTTATGTGTGTGTTTATGCCACACACGCCATGAGC
GTGAAATATAACGAAGCATAAAAGGGACGAGGCCGAGATTCGTTCGTATG
GACAAGAGTCTGTTGTACATGAAAGGGATACCATGATAGAATCATGGAAT
TAAAATATGGAGACGAAGGAAAATAAAGGCAGAAGGCATCTACCGTGTGT
CCAAAGCGCTGTAGAAAAAGGGAAGAAAGACGTAAATAAGATACATGGGC
CCGGTAGGGAACCACTTTATTTTGCCGATGTATGCCTATTGGTCCTCTCT
GGTCGTCGGAGCTTTAATCCCTTCTCGTTTATTCCAGGCAGTAGCTGTTG
CTTTCTTTTCTTTTTAATTGAACTTTCTTCCCTTCTTTTATCCTCTTCAT
CTTCGCTAGCGCTTCTTCGGTCCCATATCCCCTCAAAACTCATATACATA
CATATATACATACACACGCAAACACCGACCCTCCGAATAAATAACGATAA
GCGCGTGGACAAGTGAAAGGTCACGGGGAAGCTTAGCATCATCTCTTTCT
CTTCGAAGATGACTTTTAGTTCGATTCGTCTATGACAGCTACTGTTGCTG
CTGCTGCGGCTCCATCACCACCACCACCACTCCTCCCTCCTTGCACCTTC
CCTTTGCCTTCACCCACCTTCAATAACGAGGACGGTGACGAGGACAGCGA
GGAGGACGCAACCGTGGAGAAAGATGAAAGCAATGCTTCAATATTCTCCA
AGGCCCTCTGCACCCCTTCCATCATCAACCTTTCCTCCCCCTCGCCCTCC
CTCCCTTCCTCCCCTTCGAGGGCATCCCTGCCCGCCAGCTTCTTTGCAAG
TGCTATCTGTTGCCATACACCCACACAAGAAGGCACCGAGGACGAGGGCG
AGGAAGAAAGGGAGGAAGAGGTGGATGAAGCCAAAAAATCCCCGCGCAAG
AGCAACGCGGTCGACTTCTCCGAATGGTGTAACAGAGACCACAGGGCGAC
CGTTGCCGGGAAGCGAATTTGAATTTTTGAATGCGTCATCGCGTCACACA
CCAGAAATCTCAACAACGTCCCAGAGGCCAAAACGCTAGCCTTTCCTCCC
CCCTTGCCCCCCCCTCCTCGTAAGAAGGAGAGGTTTCGCAGAAGGTAGCA
GAGTTGTGCCGTGAGCTCTTCAACCTCTTCTTCCTTCCCATCGTCCCATC
CTCCCTCCTTCCCTTTGTCCTTCTCGCCTTCTTTGATGAATAAAACGACG
TCTTCCAGAACGGAGGGTAGGAGGGTGGGAGGGAGGTGCCGGTGGAGGAG
CTGTTGCCCTTCTGCGGCCAGGGTGAGATTGACGAGCAGTTTAAAGAGAC
CCAGTAGGCGCACCCATCCCTCCTTCCCGACCTCTGCCGGTCGGCGACGA
CGATGGGCCGGAGAAGGGGTGAGGAGGAGGGAGGGAACGAGGGAGAGGAG
GGAGGAGGCCAGGAAAGAGGAAGACGGGGGGGAAGAGGAAGGGAGGAAAA
GGTGGTGGCGTCCGGCGGGGAGGAGGGAGAGGGAACGAAGGAGGGAGAGG
AGGGGATGAGCGATGGAGGGGGGGAGGGAAGGGCGGAGGGCGAGGCGAAG
GAGGGAGGGAAGAAAGGAGGAAGAGGCGGAGGAGGAGGAGGAAAAGTGAA
GGAGGGCCTGCTTGGCCACGTCATGGAAAGCTACCAAATTGCAGAGCATG
GAGAGGAGGGCGGCGAGGAGGGAGGGGGGCAGGGAGGGAGGG
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protein sequence of NO23G00400.1

>NO23G00400.1-protein ID=NO23G00400.1-protein|Name=NO23G00400.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MHEDHPHSSLPSSFSGESQASASGPPVTDLEDFGSVEVTNRCCGAMTCRV
LAPDIFLEAKQGSGPSDTSTADSTVPTKNFTYVGRKIKNEDELRQVRRAV
KACPFHALRLRRGSKGTTVMQGDVNDAYPLPIGPHGEVFLLGYYTPKNAG
ASCYLIVRPKGGNVLIDAPLPDASLLERIRNLGEVSYLVFTHKDHTAFHR
EWFQALPGVQRVIHVDDVVQERKHFFFPYTGEVEMKIAGSKSLSLDNEGD
VLLIPIPGHTPGSLAILYRNHYLFTGDSLHYSRPRGHLVSSRLHCWSDWE
QQQKSLKALEEYDWLHILPGHGDPKEFENLKEGKMSLRQGLGWMEEQPRG
YTSMGRFIPWLQLKTNNAGMLGKVPRWVRKGMEWVVAPVGAPGTRDRARV
WEWMRYAFFAWLVLKLWLRVLA*
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mRNA from alignment at chr23:178424..181962-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO23G00400.1 ID=NO23G00400.1|Name=NO23G00400.1|organism=Nannochloropsis oceanica|type=mRNA|length=3539bp|location=Sequence derived from alignment at chr23:178424..181962- (Nannochloropsis oceanica)
AACCTCCTCCCCCTTCCCCACTTGCAATAGACCGCGTTCCATTTCCCCCC TCATTCACACACAGAGCATCAAGATCACCACTAGAAGCCTATACTGGCAG CGATATAAAACCCAAAGCGTCTTCGTCGCGTGAGTGATTTGTCTGTACAT CTCGCATCATCATCGAGGCAGTAGACCCATCGATCGACGTACTTAAAATT TTGCACCCCGTACCACACAACCGCACAGCCAACATCCCGACTCTCAGACC TGCATCACACCATGCACGAGGACCATCCACACTCATCGCTGCCGTCATCG TTTAGTGGAGAATCACAAGCGTCAGCCTCCGGGCCTCCGGTGACAGACCT TGAGGACTTCGGCTCCGTGGAGGTCACGAACCGATGCTGCGGAGCCATGA CTTGCCGCGTCTTGGCCCCAGATATCTTCCTGGAAGCCAAGCAAGGCAGC GGTCCGTCAGATACCTCAACGGCTGATAGCACCGTGCCTACTAAAAACTT TACGTACGTTGGACGGAAGATCAAGAATGAGGACGAGCTGCGCCAGGTTC GACGGGCCGTCAAAGCTTGTCCTTTTCATGCTCTGCGCTTGCGACGTGGC TCAAAAGGCACGACAGTGATGCAAGGGGACGTGAATGATGCATACCCCTT GCCAATAGGTCCGCACGGTGAGGTGTTTTTGCTTGGATACTACACCCCTA AGAATGCGGGAGCTTCTTGTTACTTGATTGTCCGCCCGAAGGGCGGTAAT GTCTTGATCGATGCCCCATTGCCGGATGCAAGCCTCCTGGAGCGAATCAG AAACTTGGGGGAGGTAAGCTATCTGGTATTTACTCACAAGGACCACACGG CGTTTCATCGTGAGTGGTTTCAGGCCTTGCCGGGCGTGCAGCGGGTCATA CATGTGGACGATGTGGTGCAGGAGAGGAAGCACTTTTTTTTCCCATACAC TGGCGAAGTGGAGATGAAAATTGGTACGTTTTGACACAGCATTATAAGGA AGAGAATAAGGAGGAGGAGACGTTGAATAGAAATTTTGTCCTTGCTCGGA ATAGGATGTCGCCAAAGCAGCACTAACAGGAATTTTTTAACACATACACA CACAAGCACATACTCACTCTCCCCTTTACTCTCCACCACCACCATCATCA CACCTTAAACACATAACACAGCGGGTAGCAAAAGTTTATCACTCGATAAT GAAGGTGACGTTTTGCTAATCCCCATTCCAGGGCACACACCCGGTAGCCT CGCGATTCTCTATCGCAACCACTACCTCTTTACGGGGGACTCCCTCCACT ACTCCCGCCCACGTGGACACCTCGTCTCCTCACGCTTGCACTGCTGGTCC GATTGGGAACAACAACAAAAGAGCCTGAAGGCCCTCGAGGAATATGATTG GTTACACATTCTGCCGGGGCATGGGGACCCGAAAGAATTTGAAAATTTGA AAGAGGGGAAAATGTCGTTACGGCAAGGGTTGGGTTGGATGGAGGAGCAG CCAAGAGGGTACACAAGCATGGGCCGTTTCATACCGTGGTTGCAACTGAA GACAAATAATGCAGGGATGCTGGGAAAGGTACCGCGATGGGTACGCAAGG GGATGGAGTGGGTGGTCGCTCCTGTGGGGGCCCCGGGAACGAGGGACAGG GCGAGGGTGTGGGAATGGATGAGGTACGCCTTTTTTGCATGGTTGGTGCT GAAGCTGTGGCTGCGGGTGCTTGCGTGATGAGGGAGAATACGGGATCGCC GGTGGATCCGGACACACCGGCGACGGTTGTCTGTCGCTTTTGCTGCTTGT TTTATCCCCGTGTTTATGTGTGTGTTTATGCCACACACGCCATGAGCGTG AAATATAACGAAGCATAAAAGGGACGAGGCCGAGATTCGTTCGTATGGAC AAGAGTCTGTTGTACATGAAAGGGATACCATGATAGAATCATGGAATTAA AATATGGAGACGAAGGAAAATAAAGGCAGAAGGCATCTACCGTGTGTCCA AAGCGCTGTAGAAAAAGGGAAGAAAGACGTAAATAAGATACATGGGCCCG GTAGGGAACCACTTTATTTTGCCGATGTATGCCTATTGGTCCTCTCTGGT CGTCGGAGCTTTAATCCCTTCTCGTTTATTCCAGGCAGTAGCTGTTGCTT TCTTTTCTTTTTAATTGAACTTTCTTCCCTTCTTTTATCCTCTTCATCTT CGCTAGCGCTTCTTCGGTCCCATATCCCCTCAAAACTCATATACATACAT ATATACATACACACGCAAACACCGACCCTCCGAATAAATAACGATAAGCG CGTGGACAAGTGAAAGGTCACGGGGAAGCTTAGCATCATCTCTTTCTCTT CGAAGATGACTTTTAGTTCGATTCGTCTATGACAGCTACTGTTGCTGCTG CTGCGGCTCCATCACCACCACCACCACTCCTCCCTCCTTGCACCTTCCCT TTGCCTTCACCCACCTTCAATAACGAGGACGGTGACGAGGACAGCGAGGA GGACGCAACCGTGGAGAAAGATGAAAGCAATGCTTCAATATTCTCCAAGG CCCTCTGCACCCCTTCCATCATCAACCTTTCCTCCCCCTCGCCCTCCCTC CCTTCCTCCCCTTCGAGGGCATCCCTGCCCGCCAGCTTCTTTGCAAGTGC TATCTGTTGCCATACACCCACACAAGAAGGCACCGAGGACGAGGGCGAGG AAGAAAGGGAGGAAGAGGTGGATGAAGCCAAAAAATCCCCGCGCAAGAGC AACGCGGTCGACTTCTCCGAATGGTGTAACAGAGACCACAGGGCGACCGT TGCCGGGAAGCGAATTTGAATTTTTGAATGCGTCATCGCGTCACACACCA GAAATCTCAACAACGTCCCAGAGGCCAAAACGCTAGCCTTTCCTCCCCCC TTGCCCCCCCCTCCTCGTAAGAAGGAGAGGTTTCGCAGAAGGTAGCAGAG TTGTGCCGTGAGCTCTTCAACCTCTTCTTCCTTCCCATCGTCCCATCCTC CCTCCTTCCCTTTGTCCTTCTCGCCTTCTTTGATGAATAAAACGACGTCT TCCAGAACGGAGGGTAGGAGGGTGGGAGGGAGGTGCCGGTGGAGGAGCTG TTGCCCTTCTGCGGCCAGGGTGAGATTGACGAGCAGTTTAAAGAGACCCA GTAGGCGCACCCATCCCTCCTTCCCGACCTCTGCCGGTCGGCGACGACGA TGGGCCGGAGAAGGGGTGAGGAGGAGGGAGGGAACGAGGGAGAGGAGGGA GGAGGCCAGGAAAGAGGAAGACGGGGGGGAAGAGGAAGGGAGGAAAAGGT GGTGGCGTCCGGCGGGGAGGAGGGAGAGGGAACGAAGGAGGGAGAGGAGG GGATGAGCGATGGAGGGGGGGAGGGAAGGGCGGAGGGCGAGGCGAAGGAG GGAGGGAAGAAAGGAGGAAGAGGCGGAGGAGGAGGAGGAAAAGTGAAGGA GGGCCTGCTTGGCCACGTCATGGAAAGCTACCAAATTGCAGAGCATGGAG AGGAGGGCGGCGAGGAGGGAGGGGGGCAGGGAGGGAGGG
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Coding sequence (CDS) from alignment at chr23:178424..181962-

>NO23G00400.1 ID=NO23G00400.1|Name=NO23G00400.1|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at chr23:178424..181962- (Nannochloropsis oceanica)
ATGCACGAGGACCATCCACACTCATCGCTGCCGTCATCGTTTAGTGGAGA
ATCACAAGCGTCAGCCTCCGGGCCTCCGGTGACAGACCTTGAGGACTTCG
GCTCCGTGGAGGTCACGAACCGATGCTGCGGAGCCATGACTTGCCGCGTC
TTGGCCCCAGATATCTTCCTGGAAGCCAAGCAAGGCAGCGGTCCGTCAGA
TACCTCAACGGCTGATAGCACCGTGCCTACTAAAAACTTTACGTACGTTG
GACGGAAGATCAAGAATGAGGACGAGCTGCGCCAGGTTCGACGGGCCGTC
AAAGCTTGTCCTTTTCATGCTCTGCGCTTGCGACGTGGCTCAAAAGGCAC
GACAGTGATGCAAGGGGACGTGAATGATGCATACCCCTTGCCAATAGGTC
CGCACGGTGAGGTGTTTTTGCTTGGATACTACACCCCTAAGAATGCGGGA
GCTTCTTGTTACTTGATTGTCCGCCCGAAGGGCGGTAATGTCTTGATCGA
TGCCCCATTGCCGGATGCAAGCCTCCTGGAGCGAATCAGAAACTTGGGGG
AGGTAAGCTATCTGGTATTTACTCACAAGGACCACACGGCGTTTCATCGT
GAGTGGTTTCAGGCCTTGCCGGGCGTGCAGCGGGTCATACATGTGGACGA
TGTGGTGCAGGAGAGGAAGCACTTTTTTTTCCCATACACTGGCGAAGTGG
AGATGAAAATTGCGGGTAGCAAAAGTTTATCACTCGATAATGAAGGTGAC
GTTTTGCTAATCCCCATTCCAGGGCACACACCCGGTAGCCTCGCGATTCT
CTATCGCAACCACTACCTCTTTACGGGGGACTCCCTCCACTACTCCCGCC
CACGTGGACACCTCGTCTCCTCACGCTTGCACTGCTGGTCCGATTGGGAA
CAACAACAAAAGAGCCTGAAGGCCCTCGAGGAATATGATTGGTTACACAT
TCTGCCGGGGCATGGGGACCCGAAAGAATTTGAAAATTTGAAAGAGGGGA
AAATGTCGTTACGGCAAGGGTTGGGTTGGATGGAGGAGCAGCCAAGAGGG
TACACAAGCATGGGCCGTTTCATACCGTGGTTGCAACTGAAGACAAATAA
TGCAGGGATGCTGGGAAAGGTACCGCGATGGGTACGCAAGGGGATGGAGT
GGGTGGTCGCTCCTGTGGGGGCCCCGGGAACGAGGGACAGGGCGAGGGTG
TGGGAATGGATGAGGTACGCCTTTTTTGCATGGTTGGTGCTGAAGCTGTG
GCTGCGGGTGCTTGCGTGA
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Synonyms
Publications