NO20G01980.1, NO20G01980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO20G01980.1
Unique NameNO20G01980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2588
Alignment locationchr20:586382..588969 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr20genomechr20:586382..588969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO20G01980.1 vs.
Match: CBJ30357.1 (expressed unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 73.9 bits (180), Expect = 1.400e-9
Identity = 108/359 (30.08%), Postives = 145/359 (40.39%), Query Frame = 0 
Query:   97 DVGGGGEPRSSTPARLSRVLTPLKGQNRRLTHAMAGTATIFADLQAREDQQRQQAEAAAAAAGQRRIERRSRRKMRRWANDRLLGVAQICSSLHNGGLEGEEE--STKAVAEGEYGPFVDRAQISNFSTLMAAENTDLRERFLAGY---GEKRGAETRRARGRSTPSLLKDAEARFLRLESRLRRLLTQLVGTDAHMGLFLEDVEALLRRFMEGGGRLLLKGSGGAGARKGAGGHGGEKEDSKIEGGSEALARWLARPLYVKKDSLVLPLNNSAFFRLLIHGCCQYYGLRSHSENLPQDSGEAEEVRAVVVAKPSAMLAASWS----ANSSMTMCDFIKNHRLNQHLVPKRRGGRCLNE 447
            D G G   R+ TP RL+R  TP + +   + H  A                  Q  +A    G+ R +   RRK RRW ND LLGV +     H    EGE E  + K       G  V        S   AAE   +RE F  G     +K G+         T    +DAE RFL +E RLR ++ + +   A +G FLE +E LL  F +    L    S    A          KE  K  G S   A   A P      +L++PL  S F RLL+H  CQY  LRS SE    ++     VR ++    S   +AS S    A  +  + +F+   RL  +   + R G    E
Sbjct:   96 DTGAG---RAHTPQRLNRTHTPQRLRPSSILHTAAAPV---------------QQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRH-AHEEGEAEHLTVKHTWRSSLGDLV--------SDPRAAE---VRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVG-FLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKEAGKSAGKS---AEAGAGP------TLLVPLGPSPFHRLLLHALCQYQKLRSKSE----ETKRGRIVRVMIPTSTSTSTSASTSGTAFAAPNAPLTEFVLRTRLQDYDRLREREGAARGE 410
The following BLAST results are available for this feature:
BLAST of NO20G01980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBJ30357.11.400e-930.08expressed unknown protein [Ectocarpus siliculosus][more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO20G01980NO20G01980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO20G01980.1NO20G01980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO20G01980.1.cds1NO20G01980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO20G01980.1 ID=NO20G01980.1|Name=NO20G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2588bp
GCGCCAAAACGAACGCTGATCCTGCAACCAAGTTCACCCAGTCATAACAC
TTGTACATCTAGCAAAACCATCCCAGGCTTTGTTATCTTCCTCGACATGC
TTATCGTTGAGTTCTAGGCGGGGTCAAGCAGATCGTCCTGCGTTGCGCCG
TCTGAGCGTCTCGCACCCCCTCGAATACGTTAACATTCAGCAGGTGGAGG
GCAAACGTCTACAGGACGAATTCATTCACGTTCCCATACATGAAGGGTCG
ACGATGTCAGGCCAGGCCAGGCCAGGCCCAGCCCACACACCACTTCCGGG
CCGATGGGGACGTGGGCGGAAGGCGACTCGGCGTTAAGCTCCAGCTTTGA
TGCCACCTCGGACTGCGCGGGGATTTACGCAATTATATTCTGTCATCCAT
GCCCTCTTTCTCCTCCCTGCCACGATAGTACAGGAACTCTGGTCGGCACC
TTTTGGAGCTGTTAAATTATCTTCAGACCATCGCTCTCTAATCGGAGCAC
GTGGCCGCAAAAGTCGGAGGAGGGCTGCGAGTGATTTCCCCGCCCAGCCT
AACCAGAGGAATGGCGTCCTGATCGACCCCCTTATCCCCTGCCTTACCCA
GCCAAGCCAGTGAGTGTACGAGATTGCCTTATTTTTTCTTGCGTGGTTGC
GCATCCGTGTATTTGGTCTTCAATCCGTAAGGTTGAAAGGTGTGTAAGTG
CGTGCGTGTGTGTGTACGTGCATCTTAAGCGCCTACATCCATTCCTCATC
CTGAATAAACTACGTGTTTGATTGGCTGAATACCCCGACCCAGTCATGTC
GTCCTCCAAGCTTTTCCCCGGTGTCGGAAAGGCGGTAGACCGGAGCAACA
GCAGCGCCGAAGGAGAAGTAGGTCATTCTTCGTCCAGCAGCAGGAGCAGC
AGCACAGGTAGGGGCGTCAGCGGGGGAGGGAATGGCAGCCGCGACAACAC
CCCAATCATCGCCCGTTACGCCATTTTATCGGCGGCTTCAGGGGTAGGGA
CAGGGGCGGTGGCAGCTGGCACGGTGGTAGAAGGCCGTGGTGTCACGTCT
TCGGTGGTTGTGGGCTCGGCGGCGCTTCTTCTCGATGTGGGGGGAGGAGG
CGAGCCCCGGTCGTCGACGCCCGCTCGCTTGTCGCGTGTCTTAACCCCAC
TCAAAGGCCAAAACCGACGGCTTACCCACGCCATGGCTGGTACCGCCACG
ATATTTGCAGACTTGCAGGCGCGCGAGGACCAGCAACGTCAGCAAGCAGA
AGCTGCTGCAGCGGCGGCGGGTCAGCGACGCATTGAGCGTCGCTCTCGCA
GAAAAATGCGAAGATGGGCCAACGACCGTTTGCTGGGCGTGGCGCAAATC
TGCAGCAGCTTGCACAATGGTGGCCTGGAGGGGGAAGAGGAGAGTACGAA
GGCAGTGGCGGAAGGAGAGTACGGGCCGTTTGTGGACCGGGCACAAATCA
GTAATTTTTCAACGTTGATGGCGGCAGAGAACACAGACCTGCGGGAGCGA
TTTTTGGCAGGGTATGGGGAGAAGCGTGGAGCAGAGACAAGAAGGGCGAG
AGGAAGGTCGACGCCGTCGCTCTTGAAGGATGCGGAGGCGCGATTTCTGC
GGTTGGAGTCTCGGTTACGGAGGCTGTTGACGCAGCTGGTGGGAACGGAT
GCGCACATGGGGTTGTTCTTGGAGGATGTGGAAGCGCTGCTGCGTAGATT
CATGGAAGGGGGGGGTAGGCTGCTTTTGAAAGGTAGTGGAGGAGCAGGAG
CACGAAAAGGAGCAGGAGGGCATGGCGGCGAGAAAGAGGACAGCAAGATT
GAGGGTGGGAGTGAGGCTCTGGCCCGGTGGCTGGCCCGGCCGTTGTACGT
AAAGAAGGATTCCTTGGTGCTGCCTTTGAACAACTCAGCTTTCTTCCGCC
TTCTCATCCACGGGTGCTGCCAGTACTATGGCCTCCGCTCGCACAGCGAG
AACCTGCCTCAGGACAGCGGGGAGGCCGAGGAAGTGCGGGCGGTGGTGGT
TGCCAAGCCTTCCGCCATGCTGGCTGCCTCGTGGTCCGCCAACTCCTCCA
TGACCATGTGTGACTTCATCAAGAACCATCGACTTAACCAGCATCTTGTG
CCTAAGCGCCGTGGCGGGAGATGTCTAAACGAGGCGTCTGAGGAAGAATG
CGTCGTCGCGCGTGCTGTTGCTCCTGTCGTGCTCAAACCTGTGAAAACCT
GATGTATTTTACGCGATAAATACGCTAGGGGGGTAGCGGGACGAAGGAGA
AGGAGAAAGGTGGACAAGGAAGGAAGAGAAGGAAGAAAAAGCGCAGGATG
GAAGAAGGGAAGTGATTGGTCGAGGTGGGAAGGGTAGTAATAACAGGCAC
TGTTTGGGGAAGGGGTTGAAGACATGTGTCCTCAACTTAACTGTAGATTA
GCAATCGGGGAAGATAGGGTGTGTGTTCTCTATACATACAAATGCATGTG
AAAGAAAACGAGGGAGGGTGGGAGGCTGCACGCACTCATATGGTGTGATC
GGGAGCCCAGGGATGGAAGCAAAAGGGAGCGTAATTTATAATTTTTCCTC
GATTTCCGAAATTTTTCAAAGCCAAAAAGACATTCACT
back to top

protein sequence of NO20G01980.1

>NO20G01980.1-protein ID=NO20G01980.1-protein|Name=NO20G01980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MSSSKLFPGVGKAVDRSNSSAEGEVGHSSSSSRSSSTGRGVSGGGNGSRD
NTPIIARYAILSAASGVGTGAVAAGTVVEGRGVTSSVVVGSAALLLDVGG
GGEPRSSTPARLSRVLTPLKGQNRRLTHAMAGTATIFADLQAREDQQRQQ
AEAAAAAAGQRRIERRSRRKMRRWANDRLLGVAQICSSLHNGGLEGEEES
TKAVAEGEYGPFVDRAQISNFSTLMAAENTDLRERFLAGYGEKRGAETRR
ARGRSTPSLLKDAEARFLRLESRLRRLLTQLVGTDAHMGLFLEDVEALLR
RFMEGGGRLLLKGSGGAGARKGAGGHGGEKEDSKIEGGSEALARWLARPL
YVKKDSLVLPLNNSAFFRLLIHGCCQYYGLRSHSENLPQDSGEAEEVRAV
VVAKPSAMLAASWSANSSMTMCDFIKNHRLNQHLVPKRRGGRCLNEASEE
ECVVARAVAPVVLKPVKT*
back to top

mRNA from alignment at chr20:586382..588969+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO20G01980.1 ID=NO20G01980.1|Name=NO20G01980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2588bp|location=Sequence derived from alignment at chr20:586382..588969+ (Nannochloropsis oceanica)
GCGCCAAAACGAACGCTGATCCTGCAACCAAGTTCACCCAGTCATAACAC
TTGTACATCTAGCAAAACCATCCCAGGCTTTGTTATCTTCCTCGACATGC
TTATCGTTGAGTTCTAGGCGGGGTCAAGCAGATCGTCCTGCGTTGCGCCG
TCTGAGCGTCTCGCACCCCCTCGAATACGTTAACATTCAGCAGGTGGAGG
GCAAACGTCTACAGGACGAATTCATTCACGTTCCCATACATGAAGGGTCG
ACGATGTCAGGCCAGGCCAGGCCAGGCCCAGCCCACACACCACTTCCGGG
CCGATGGGGACGTGGGCGGAAGGCGACTCGGCGTTAAGCTCCAGCTTTGA
TGCCACCTCGGACTGCGCGGGGATTTACGCAATTATATTCTGTCATCCAT
GCCCTCTTTCTCCTCCCTGCCACGATAGTACAGGAACTCTGGTCGGCACC
TTTTGGAGCTGTTAAATTATCTTCAGACCATCGCTCTCTAATCGGAGCAC
GTGGCCGCAAAAGTCGGAGGAGGGCTGCGAGTGATTTCCCCGCCCAGCCT
AACCAGAGGAATGGCGTCCTGATCGACCCCCTTATCCCCTGCCTTACCCA
GCCAAGCCAGTGAGTGTACGAGATTGCCTTATTTTTTCTTGCGTGGTTGC
GCATCCGTGTATTTGGTCTTCAATCCGTAAGGTTGAAAGGTGTGTAAGTG
CGTGCGTGTGTGTGTACGTGCATCTTAAGCGCCTACATCCATTCCTCATC
CTGAATAAACTACGTGTTTGATTGGCTGAATACCCCGACCCAGTCATGTC
GTCCTCCAAGCTTTTCCCCGGTGTCGGAAAGGCGGTAGACCGGAGCAACA
GCAGCGCCGAAGGAGAAGTAGGTCATTCTTCGTCCAGCAGCAGGAGCAGC
AGCACAGGTAGGGGCGTCAGCGGGGGAGGGAATGGCAGCCGCGACAACAC
CCCAATCATCGCCCGTTACGCCATTTTATCGGCGGCTTCAGGGGTAGGGA
CAGGGGCGGTGGCAGCTGGCACGGTGGTAGAAGGCCGTGGTGTCACGTCT
TCGGTGGTTGTGGGCTCGGCGGCGCTTCTTCTCGATGTGGGGGGAGGAGG
CGAGCCCCGGTCGTCGACGCCCGCTCGCTTGTCGCGTGTCTTAACCCCAC
TCAAAGGCCAAAACCGACGGCTTACCCACGCCATGGCTGGTACCGCCACG
ATATTTGCAGACTTGCAGGCGCGCGAGGACCAGCAACGTCAGCAAGCAGA
AGCTGCTGCAGCGGCGGCGGGTCAGCGACGCATTGAGCGTCGCTCTCGCA
GAAAAATGCGAAGATGGGCCAACGACCGTTTGCTGGGCGTGGCGCAAATC
TGCAGCAGCTTGCACAATGGTGGCCTGGAGGGGGAAGAGGAGAGTACGAA
GGCAGTGGCGGAAGGAGAGTACGGGCCGTTTGTGGACCGGGCACAAATCA
GTAATTTTTCAACGTTGATGGCGGCAGAGAACACAGACCTGCGGGAGCGA
TTTTTGGCAGGGTATGGGGAGAAGCGTGGAGCAGAGACAAGAAGGGCGAG
AGGAAGGTCGACGCCGTCGCTCTTGAAGGATGCGGAGGCGCGATTTCTGC
GGTTGGAGTCTCGGTTACGGAGGCTGTTGACGCAGCTGGTGGGAACGGAT
GCGCACATGGGGTTGTTCTTGGAGGATGTGGAAGCGCTGCTGCGTAGATT
CATGGAAGGGGGGGGTAGGCTGCTTTTGAAAGGTAGTGGAGGAGCAGGAG
CACGAAAAGGAGCAGGAGGGCATGGCGGCGAGAAAGAGGACAGCAAGATT
GAGGGTGGGAGTGAGGCTCTGGCCCGGTGGCTGGCCCGGCCGTTGTACGT
AAAGAAGGATTCCTTGGTGCTGCCTTTGAACAACTCAGCTTTCTTCCGCC
TTCTCATCCACGGGTGCTGCCAGTACTATGGCCTCCGCTCGCACAGCGAG
AACCTGCCTCAGGACAGCGGGGAGGCCGAGGAAGTGCGGGCGGTGGTGGT
TGCCAAGCCTTCCGCCATGCTGGCTGCCTCGTGGTCCGCCAACTCCTCCA
TGACCATGTGTGACTTCATCAAGAACCATCGACTTAACCAGCATCTTGTG
CCTAAGCGCCGTGGCGGGAGATGTCTAAACGAGGCGTCTGAGGAAGAATG
CGTCGTCGCGCGTGCTGTTGCTCCTGTCGTGCTCAAACCTGTGAAAACCT
GATGTATTTTACGCGATAAATACGCTAGGGGGGTAGCGGGACGAAGGAGA
AGGAGAAAGGTGGACAAGGAAGGAAGAGAAGGAAGAAAAAGCGCAGGATG
GAAGAAGGGAAGTGATTGGTCGAGGTGGGAAGGGTAGTAATAACAGGCAC
TGTTTGGGGAAGGGGTTGAAGACATGTGTCCTCAACTTAACTGTAGATTA
GCAATCGGGGAAGATAGGGTGTGTGTTCTCTATACATACAAATGCATGTG
AAAGAAAACGAGGGAGGGTGGGAGGCTGCACGCACTCATATGGTGTGATC
GGGAGCCCAGGGATGGAAGCAAAAGGGAGCGTAATTTATAATTTTTCCTC
GATTTCCGAAATTTTTCAAAGCCAAAAAGACATTCACT
back to top

Coding sequence (CDS) from alignment at chr20:586382..588969+

>NO20G01980.1 ID=NO20G01980.1|Name=NO20G01980.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr20:586382..588969+ (Nannochloropsis oceanica)
ATGTCGTCCTCCAAGCTTTTCCCCGGTGTCGGAAAGGCGGTAGACCGGAG
CAACAGCAGCGCCGAAGGAGAAGTAGGTCATTCTTCGTCCAGCAGCAGGA
GCAGCAGCACAGGTAGGGGCGTCAGCGGGGGAGGGAATGGCAGCCGCGAC
AACACCCCAATCATCGCCCGTTACGCCATTTTATCGGCGGCTTCAGGGGT
AGGGACAGGGGCGGTGGCAGCTGGCACGGTGGTAGAAGGCCGTGGTGTCA
CGTCTTCGGTGGTTGTGGGCTCGGCGGCGCTTCTTCTCGATGTGGGGGGA
GGAGGCGAGCCCCGGTCGTCGACGCCCGCTCGCTTGTCGCGTGTCTTAAC
CCCACTCAAAGGCCAAAACCGACGGCTTACCCACGCCATGGCTGGTACCG
CCACGATATTTGCAGACTTGCAGGCGCGCGAGGACCAGCAACGTCAGCAA
GCAGAAGCTGCTGCAGCGGCGGCGGGTCAGCGACGCATTGAGCGTCGCTC
TCGCAGAAAAATGCGAAGATGGGCCAACGACCGTTTGCTGGGCGTGGCGC
AAATCTGCAGCAGCTTGCACAATGGTGGCCTGGAGGGGGAAGAGGAGAGT
ACGAAGGCAGTGGCGGAAGGAGAGTACGGGCCGTTTGTGGACCGGGCACA
AATCAGTAATTTTTCAACGTTGATGGCGGCAGAGAACACAGACCTGCGGG
AGCGATTTTTGGCAGGGTATGGGGAGAAGCGTGGAGCAGAGACAAGAAGG
GCGAGAGGAAGGTCGACGCCGTCGCTCTTGAAGGATGCGGAGGCGCGATT
TCTGCGGTTGGAGTCTCGGTTACGGAGGCTGTTGACGCAGCTGGTGGGAA
CGGATGCGCACATGGGGTTGTTCTTGGAGGATGTGGAAGCGCTGCTGCGT
AGATTCATGGAAGGGGGGGGTAGGCTGCTTTTGAAAGGTAGTGGAGGAGC
AGGAGCACGAAAAGGAGCAGGAGGGCATGGCGGCGAGAAAGAGGACAGCA
AGATTGAGGGTGGGAGTGAGGCTCTGGCCCGGTGGCTGGCCCGGCCGTTG
TACGTAAAGAAGGATTCCTTGGTGCTGCCTTTGAACAACTCAGCTTTCTT
CCGCCTTCTCATCCACGGGTGCTGCCAGTACTATGGCCTCCGCTCGCACA
GCGAGAACCTGCCTCAGGACAGCGGGGAGGCCGAGGAAGTGCGGGCGGTG
GTGGTTGCCAAGCCTTCCGCCATGCTGGCTGCCTCGTGGTCCGCCAACTC
CTCCATGACCATGTGTGACTTCATCAAGAACCATCGACTTAACCAGCATC
TTGTGCCTAAGCGCCGTGGCGGGAGATGTCTAAACGAGGCGTCTGAGGAA
GAATGCGTCGTCGCGCGTGCTGTTGCTCCTGTCGTGCTCAAACCTGTGAA
AACCTGA
back to top
Synonyms
Publications